Rmu_sc0006019.1_g000006

RING-H2 finger protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006019.1
Physical Location & Seq
Forward (+)
35764 .. 36978
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006019.1_g000006.1.cds

Sequence Viewer

Length: 1215 bp
atggttcccgccgcgtccccatccccttctcctgcaccctcccccaccccaacattctccacccccctcaccaccctcacaaaccccaacgccactctcctccatgcatcatcctcatcatatccgccgtccaagctccccatcgacttctccccgccgctcatcgccatggtcgtcgtcgtcgccaccgctttcttaatcgtcacctactcccgcctcatctcccgccacgtcatccccccgatcatccgattctcccgccactgccgccgccgtcgccgccgctcctacctcccctcctccatcggcgacctcgactccccgccctacgactcgtcgttcgaccccacggacggcttccatgtcttctccccatacggcctcgacgagtcggtgatcaagaccataccgctgtcgctctacaccgccaagaccggcctccggagcaaggattgcgccgtctgcttgatcgagttcgaagacgatgagtatgtccggacgcttccggtttgttcccacgcctttcacgtcgactgcatcgacatgtggctcaggtcccacgccaactgtccgctctgccgcgccggaatattccgtcccgagtctcccttcattcccttaatggccgccagaatccggccgagcctcgacgacgcgcttctccgcagcatggctctcgagcctctagcggaaactccgccgcgtgagacggagtccacggcggagataactccctgcgcggaggagcagtcgccgcggaggacgttcaattactgggaggaccgtatcaacggcggagatttcgtcctcaagcggtcgtactcgttcggattcgagcggagctccgcttcggagcggatgatggtgacggagccgacgacggcgtcgccgtggcggtaccggagaggcggaagcttctggagcaagaggccgtcgccgttcgggtcgctgacgaagccgcgggtgttctcgttccggtcccaccgaggcatgaacatgaagtcgcctttcttccggcgtaaaggcttcttcccgctgtcggagtcaagcgcgagattctccaccgggggcggctcttcccggcggacgaagtcgatgacgagcccgatgttcatgaggtcgtcggcgttgaccgcggcggcgttctcgtcaagccggctccggtgcggcgaccccgaggcgctgttgtcgccggagaggtttaacagaagatag

Protein Analysis

404

Amino Acids

45.24

Weight (kDa)

9.82

Isoelectric Point (pI)

82.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012522)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 883
Acc65I GGTACC 1 cut(s) 897
AccB1I GGYRCC 1 cut(s) 897
AccBSI CCGCTC 5 cut(s) 160, 285, 574, 838, 856
AccI GTMKAC 1 cut(s) 531
AccII CGCG 9 cut(s) 14, 582, 656, 703, 740, 757, 961, 1052, 1136
AccIII TCCGGA 2 cut(s) 441, 495
AcoI YGGCCR 2 cut(s) 624, 638
AcyI GRCGYC 1 cut(s) 884
AfaI GTAC 2 cut(s) 821, 899
AfiI CCNNNNNNNGG 6 cut(s) 353, 441, 448, 636, 670, 1039
AflIII ACRYGT 1 cut(s) 543
AgsI TTSAA 1 cut(s) 769
AjiI CACGTC 2 cut(s) 232, 529
AluBI AGCT 3 cut(s) 136, 843, 915
AluI AGCT 3 cut(s) 136, 843, 915
Alw21I GWGCWC 1 cut(s) 845
Alw26I GTCTC 2 cut(s) 609, 701
Ama87I CYCGRG 3 cut(s) 599, 677, 1175
Aor13HI TCCGGA 2 cut(s) 441, 495
AoxI GGCC 5 cut(s) 379, 436, 624, 638, 929
ApeKI GCWGC 1 cut(s) 666
ArsI GACNNNNNNTTYG 2 cut(s) 323, 355
Asp718I GGTACC 1 cut(s) 897
AspLEI GCGC 6 cut(s) 458, 584, 658, 740, 1052, 1183
AspS9I GGNCC 3 cut(s) 555, 781, 978
AsuC2I CCSGG 2 cut(s) 1066, 1081
AsuHPI GGTGA 4 cut(s) 61, 196, 406, 877
AsuII TTCGAA 1 cut(s) 477
AvaI CYCGRG 3 cut(s) 599, 677, 1175
AvaII GGWCC 3 cut(s) 555, 781, 978
BanI GGYRCC 1 cut(s) 897
BanII GRGCYC 2 cut(s) 845, 1106
BbsI GAAGAC 2 cut(s) 358, 486
Bbv12I GWGCWC 1 cut(s) 845
BbvI GCAGC 1 cut(s) 678
BccI CCATC 4 cut(s) 28, 149, 311, 856
BcgI CGANNNNNNTGC 2 cut(s) 658, 692
BclI TGATCA 1 cut(s) 396
BcnI CCSGG 2 cut(s) 1066, 1081
BcoDI GTCTC 2 cut(s) 609, 701
BfaI CTAG 1 cut(s) 686
BfoI RGCGCY 1 cut(s) 1184
Bme1390I CCNGG 2 cut(s) 1066, 1081
Bme18I GGWCC 3 cut(s) 555, 781, 978
BmeT110I CYCGRG 3 cut(s) 599, 677, 1175
BmgBI CACGTC 2 cut(s) 232, 529
BmgT120I GGNCC 3 cut(s) 555, 781, 978
BmiI GGNNCC 6 cut(s) 6, 557, 873, 899, 980, 1160
BmrFI CCNGG 2 cut(s) 1066, 1081
BmrI ACTGGG 1 cut(s) 784
BmsI GCATC 2 cut(s) 116, 546
BmuI ACTGGG 1 cut(s) 784
BpiI GAAGAC 2 cut(s) 358, 486
BplI GAGNNNNNCTC 2 cut(s) 827, 859
BpmI CTGGAG 1 cut(s) 940
Bpu10I CCTNAGC 1 cut(s) 551
Bpu14I TTCGAA 1 cut(s) 477
BpuEI CTTGAG 1 cut(s) 794
BpuMI CCSGG 2 cut(s) 1066, 1081
BsaHI GRCGYC 1 cut(s) 884
BsaWI WCCGGW 6 cut(s) 441, 495, 505, 900, 975, 1161
BsaXI ACNNNNNCTCC 8 cut(s) 281, 302, 311, 332, 734, 764, 789, 819
Bsc4I CCNNNNNNNGG 6 cut(s) 353, 441, 448, 636, 670, 1039
Bse118I RCCGGY 2 cut(s) 434, 1155
Bse1I ACTGG 1 cut(s) 779
BseAI TCCGGA 2 cut(s) 441, 495
BseGI GGATG 5 cut(s) 20, 110, 234, 246, 864
BseLI CCNNNNNNNGG 6 cut(s) 353, 441, 448, 636, 670, 1039
BseMII CTCAG 1 cut(s) 565
BseNI ACTGG 1 cut(s) 779
BseRI GAGGAG 3 cut(s) 89, 289, 758
BseX3I CGGCCG 1 cut(s) 638
BseXI GCAGC 1 cut(s) 678
BsgI GTGCAG 1 cut(s) 18
Bsh1236I CGCG 9 cut(s) 14, 582, 656, 703, 740, 757, 961, 1052, 1136
Bsh1285I CGRYCG 2 cut(s) 641, 818
BshFI GGCC 5 cut(s) 381, 438, 626, 640, 931
BshNI GGYRCC 1 cut(s) 897
BsiEI CGRYCG 2 cut(s) 641, 818
BsiHKAI GWGCWC 1 cut(s) 845
BsiHKCI CYCGRG 3 cut(s) 599, 677, 1175
BslFI GGGAC 3 cut(s) 541, 582, 964
BslI CCNNNNNNNGG 6 cut(s) 353, 441, 448, 636, 670, 1039
BsmAI GTCTC 2 cut(s) 609, 701
BsmBI CGTCTC 1 cut(s) 701
BsmFI GGGAC 3 cut(s) 541, 582, 964
BsnI GGCC 5 cut(s) 381, 438, 626, 640, 931
BsoBI CYCGRG 3 cut(s) 599, 677, 1175
Bsp119I TTCGAA 1 cut(s) 477
Bsp1286I GDGCHC 2 cut(s) 845, 1106
Bsp13I TCCGGA 2 cut(s) 441, 495
Bsp143I GATC 3 cut(s) 243, 396, 468
Bsp19I CCATGG 1 cut(s) 168
BspANI GGCC 5 cut(s) 381, 438, 626, 640, 931
BspCNI CTCAG 1 cut(s) 564
BspEI TCCGGA 2 cut(s) 441, 495
BspFNI CGCG 9 cut(s) 14, 582, 656, 703, 740, 757, 961, 1052, 1136
BspHI TCATGA 1 cut(s) 1113
BspLI GGNNCC 6 cut(s) 6, 557, 873, 899, 980, 1160
BspQI GCTCTTC 1 cut(s) 1081
BspT104I TTCGAA 1 cut(s) 477
BspT107I GGYRCC 1 cut(s) 897
BsrBI CCGCTC 5 cut(s) 160, 285, 574, 838, 856
BsrFI RCCGGY 2 cut(s) 434, 1155
BsrI ACTGG 1 cut(s) 779
BssAI RCCGGY 2 cut(s) 434, 1155
BssMI GATC 3 cut(s) 243, 396, 468
BssNI GRCGYC 1 cut(s) 884
BssT1I CCWWGG 1 cut(s) 168
Bst4CI ACNGT 2 cut(s) 569, 785
Bst6I CTCTTC 1 cut(s) 1081
BstACI GRCGYC 1 cut(s) 884
BstAPI GCANNNNNTGC 1 cut(s) 453
BstBI TTCGAA 1 cut(s) 477
BstC8I GCNNGC 1 cut(s) 1157
BstDEI CTNAG 1 cut(s) 551
BstDSI CCRYGG 7 cut(s) 168, 348, 717, 755, 890, 959, 1134
BstF5I GGATG 5 cut(s) 20, 110, 234, 246, 864
BstFNI CGCG 9 cut(s) 14, 582, 656, 703, 740, 757, 961, 1052, 1136
BstH2I RGCGCY 1 cut(s) 1184
BstHHI GCGC 6 cut(s) 458, 584, 658, 740, 1052, 1183
BstKTI GATC 3 cut(s) 246, 399, 471
BstMAI GTCTC 2 cut(s) 609, 701
BstMBI GATC 3 cut(s) 243, 396, 468
BstMCI CGRYCG 2 cut(s) 641, 818
BstNSI RCATGY 1 cut(s) 547
BstSCI CCNGG 2 cut(s) 1064, 1079
BstUI CGCG 9 cut(s) 14, 582, 656, 703, 740, 757, 961, 1052, 1136
BstV1I GCAGC 1 cut(s) 678
BstV2I GAAGAC 2 cut(s) 358, 486
BstZI CGGCCG 1 cut(s) 638
BsuRI GGCC 5 cut(s) 381, 438, 626, 640, 931
BtgI CCRYGG 7 cut(s) 168, 348, 717, 755, 890, 959, 1134
BtgZI GCGATG 1 cut(s) 148
BtrI CACGTC 2 cut(s) 232, 529
BtsCI GGATG 5 cut(s) 20, 110, 234, 246, 864
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 1157
CciI TCATGA 1 cut(s) 1113
CfoI GCGC 6 cut(s) 458, 584, 658, 740, 1052, 1183
Cfr10I RCCGGY 2 cut(s) 434, 1155
Cfr13I GGNCC 3 cut(s) 555, 781, 978
Cfr42I CCGCGG 3 cut(s) 758, 962, 1137
CseI GACGC 4 cut(s) 3, 508, 662, 873
Csp6I GTAC 2 cut(s) 820, 898
CviAII CATG 8 cut(s) 104, 169, 362, 544, 670, 991, 997, 1114
CviQI GTAC 2 cut(s) 820, 898
DdeI CTNAG 1 cut(s) 551
DpnI GATC 3 cut(s) 245, 398, 470
DpnII GATC 3 cut(s) 243, 396, 468
DrdI GACNNNNNNGTC 1 cut(s) 883
DseDI GACNNNNNNGTC 1 cut(s) 883
EaeI YGGCCR 2 cut(s) 624, 638
EagI CGGCCG 1 cut(s) 638
Eam1104I CTCTTC 1 cut(s) 1081
EarI CTCTTC 1 cut(s) 1081
EciI GGCGGA 6 cut(s) 114, 687, 737, 810, 924, 1099
Ecl136II GAGCTC 1 cut(s) 843
EclXI CGGCCG 1 cut(s) 638
Eco130I CCWWGG 1 cut(s) 168
Eco24I GRGCYC 2 cut(s) 845, 1106
Eco47I GGWCC 3 cut(s) 555, 781, 978
Eco52I CGGCCG 1 cut(s) 638
Eco53kI GAGCTC 1 cut(s) 843
Eco88I CYCGRG 3 cut(s) 599, 677, 1175
EcoICRI GAGCTC 1 cut(s) 843
EcoO109I RGGNCCY 1 cut(s) 555
EcoT14I CCWWGG 1 cut(s) 168
EcoT22I ATGCAT 1 cut(s) 109
EcoT38I GRGCYC 2 cut(s) 845, 1106
ErhI CCWWGG 1 cut(s) 168
Esp3I CGTCTC 1 cut(s) 701
FaeI CATG 8 cut(s) 107, 172, 365, 547, 673, 994, 1000, 1117
FaqI GGGAC 3 cut(s) 541, 582, 964
FatI CATG 8 cut(s) 103, 168, 361, 543, 669, 990, 996, 1113
FauI CCCGC 8 cut(s) 16, 162, 221, 233, 266, 330, 954, 1041
FbaI TGATCA 1 cut(s) 396
FblI GTMKAC 1 cut(s) 531
FokI GGATG 5 cut(s) 7, 97, 221, 233, 871
FriOI GRGCYC 2 cut(s) 845, 1106
FspBI CTAG 1 cut(s) 686
GlaI GCGC 6 cut(s) 457, 583, 657, 739, 1051, 1182
GsuI CTGGAG 1 cut(s) 940
HaeII RGCGCY 1 cut(s) 1184
HaeIII GGCC 5 cut(s) 381, 438, 626, 640, 931
HgaI GACGC 4 cut(s) 3, 508, 662, 873
HhaI GCGC 6 cut(s) 458, 584, 658, 740, 1052, 1183
Hin1I GRCGYC 1 cut(s) 884
Hin1II CATG 8 cut(s) 107, 172, 365, 547, 673, 994, 1000, 1117
Hin6I GCGC 6 cut(s) 456, 582, 656, 738, 1050, 1181
HinP1I GCGC 6 cut(s) 456, 582, 656, 738, 1050, 1181
HincII GTYRAC 2 cut(s) 532, 1131
HindII GTYRAC 2 cut(s) 532, 1131
HindIII AAGCTT 1 cut(s) 913
HphI GGTGA 4 cut(s) 61, 196, 406, 877
Hpy166II GTNNAC 3 cut(s) 532, 717, 1131
Hpy188I TCNGA 4 cut(s) 251, 830, 853, 1042
Hpy188III TCNNGA 7 cut(s) 400, 442, 496, 599, 677, 919, 1114
Hpy8I GTNNAC 3 cut(s) 532, 717, 1131
HpyAV CCTTC 2 cut(s) 36, 619
HpyCH4III ACNGT 2 cut(s) 569, 785
HpyCH4IV ACGT 3 cut(s) 231, 528, 764
HpyCH4V TGCA 3 cut(s) 35, 107, 537
HpyF3I CTNAG 1 cut(s) 551
HpySE526I ACGT 3 cut(s) 231, 528, 764
Hsp92I GRCGYC 1 cut(s) 884
Hsp92II CATG 8 cut(s) 107, 172, 365, 547, 673, 994, 1000, 1117
HspAI GCGC 6 cut(s) 456, 582, 656, 738, 1050, 1181
Kpn2I TCCGGA 2 cut(s) 441, 495
KpnI GGTACC 1 cut(s) 901
KroI GCCGGC 1 cut(s) 1155
KroNI GCCGGC 1 cut(s) 1157
Ksp22I TGATCA 1 cut(s) 396
KspI CCGCGG 3 cut(s) 758, 962, 1137
Kzo9I GATC 3 cut(s) 243, 396, 468
LguI GCTCTTC 1 cut(s) 1081
Lsp1109I GCAGC 1 cut(s) 678
LweI GCATC 2 cut(s) 116, 546
MaeI CTAG 1 cut(s) 686
MaeII ACGT 3 cut(s) 231, 528, 764
MaeIII GTNAC 2 cut(s) 202, 865
MalI GATC 3 cut(s) 245, 398, 470
MbiI CCGCTC 5 cut(s) 160, 285, 574, 838, 856
MboI GATC 3 cut(s) 243, 396, 468
MboII GAAGA 5 cut(s) 358, 491, 1003, 1021, 1068
MhlI GDGCHC 2 cut(s) 845, 1106
MluCI AATT 1 cut(s) 769
MlyI GAGTC 6 cut(s) 311, 326, 398, 611, 722, 1052
MmeI TCCRAC 1 cut(s) 1020
Mph1103I ATGCAT 1 cut(s) 109
MroI TCCGGA 2 cut(s) 441, 495
MroNI GCCGGC 1 cut(s) 1155
MseI TTAA 3 cut(s) 197, 620, 1203
MslI CAYNNNNRTG 3 cut(s) 167, 542, 995
MspA1I CMGCKG 5 cut(s) 412, 757, 961, 1036, 1136
MspR9I CCNGG 2 cut(s) 1066, 1081
MvnI CGCG 9 cut(s) 14, 582, 656, 703, 740, 757, 961, 1052, 1136
NaeI GCCGGC 1 cut(s) 1157
NciI CCSGG 2 cut(s) 1066, 1081
NcoI CCATGG 1 cut(s) 168
NdeII GATC 3 cut(s) 243, 396, 468
NgoMIV GCCGGC 1 cut(s) 1155
NlaIII CATG 8 cut(s) 107, 172, 365, 547, 673, 994, 1000, 1117
NlaIV GGNNCC 6 cut(s) 6, 557, 873, 899, 980, 1160
NmeAIII GCCGAG 1 cut(s) 666
NmuCI GTSAC 2 cut(s) 202, 865
NsiI ATGCAT 1 cut(s) 109
NspI RCATGY 1 cut(s) 547
NspV TTCGAA 1 cut(s) 477
PaeR7I CTCGAG 1 cut(s) 677
PagI TCATGA 1 cut(s) 1113
PciI ACATGT 1 cut(s) 543
PciSI GCTCTTC 1 cut(s) 1081
PcsI WCGNNNNNNNCGW 7 cut(s) 171, 312, 384, 525, 537, 875, 887
PdiI GCCGGC 1 cut(s) 1157
PfeI GAWTC 4 cut(s) 252, 633, 831, 1056
PflFI GACNNNGTC 3 cut(s) 712, 883, 1090
PleI GAGTC 6 cut(s) 311, 326, 397, 610, 721, 1051
PpsI GAGTC 6 cut(s) 311, 326, 397, 610, 721, 1051
PpuMI RGGWCCY 1 cut(s) 555
PscI ACATGT 1 cut(s) 543
Psp124BI GAGCTC 1 cut(s) 845
Psp5II RGGWCCY 1 cut(s) 555
PspN4I GGNNCC 6 cut(s) 6, 557, 873, 899, 980, 1160
PspPI GGNCC 3 cut(s) 555, 781, 978
PspPPI RGGWCCY 1 cut(s) 555
PsyI GACNNNGTC 3 cut(s) 712, 883, 1090
RsaI GTAC 2 cut(s) 821, 899
RsaNI GTAC 2 cut(s) 820, 898
RseI CAYNNNNRTG 3 cut(s) 167, 542, 995
SacI GAGCTC 1 cut(s) 845
SacII CCGCGG 3 cut(s) 758, 962, 1137
SalI GTCGAC 1 cut(s) 530
SapI GCTCTTC 1 cut(s) 1081
SaqAI TTAA 3 cut(s) 197, 620, 1203
Sau3AI GATC 3 cut(s) 243, 396, 468
Sau96I GGNCC 3 cut(s) 555, 781, 978
SchI GAGTC 6 cut(s) 311, 326, 398, 611, 722, 1052
ScrFI CCNGG 2 cut(s) 1066, 1081
SduI GDGCHC 2 cut(s) 845, 1106
SfaNI GCATC 2 cut(s) 116, 546
Sfr274I CTCGAG 1 cut(s) 677
Sfr303I CCGCGG 3 cut(s) 758, 962, 1137
SfuI TTCGAA 1 cut(s) 477
SgrBI CCGCGG 3 cut(s) 758, 962, 1137
SinI GGWCC 3 cut(s) 555, 781, 978
SlaI CTCGAG 1 cut(s) 677
SmiMI CAYNNNNRTG 3 cut(s) 167, 542, 995
SmlI CTYRAG 2 cut(s) 677, 809
SmoI CTYRAG 2 cut(s) 677, 809
Sse9I AATT 1 cut(s) 769
SspI AATATT 1 cut(s) 591
SspMI CTAG 1 cut(s) 686
SstI GAGCTC 1 cut(s) 845
StyD4I CCNGG 2 cut(s) 1064, 1079
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 2 cut(s) 569, 785
TaiI ACGT 3 cut(s) 234, 531, 767
TasI AATT 1 cut(s) 769
TfiI GAWTC 4 cut(s) 252, 633, 831, 1056
Tru1I TTAA 3 cut(s) 197, 620, 1203
Tru9I TTAA 3 cut(s) 197, 620, 1203
TscAI CASTG 1 cut(s) 269
TseFI GTSAC 2 cut(s) 202, 865
TseI GCWGC 1 cut(s) 666
Tsp45I GTSAC 2 cut(s) 202, 865
TspDTI ATGAA 4 cut(s) 601, 1007, 1013, 1102
TspGWI ACGGA 4 cut(s) 365, 584, 725, 884
TspRI CASTG 1 cut(s) 269
Tth111I GACNNNGTC 3 cut(s) 712, 883, 1090
VpaK11BI GGWCC 3 cut(s) 555, 781, 978
XceI RCATGY 1 cut(s) 547
XhoI CTCGAG 1 cut(s) 677
XmiI GTMKAC 1 cut(s) 531
XspI CTAG 1 cut(s) 686
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.