Prupe.8G108300_v2.0.a1

RING-H2 finger protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
13877728 .. 13880344
2617 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G108300.1

Sequence Viewer

Length: 1227 bp
ATGGTTGCTGCTGCAGCTCCAGCTCCATCGCCATATCCTGCACGCGCACCCACCCTATCCATTCCCATCATCACAGCCACCTCACTCCATGCATCATCTCCGCCGTCCAAGTACCCCATCGACTTTTCCCCGCCGTTGATCGCCATGGTGGTCGTCGTCGCCACCGCCTTCCTAATCGTCACTTACTCCCGCCTCATCTCCCAACACGTCATCCCGCCAATCCTCCGCCTCCAACGACGCTGGCGCCGCCGTCGTCGCCGCTCCTACCTCCCCTCCTCCATCGGCGACCTAGACTCTCCACGGTACGACTCGTCGTTTGACCCGGCCGACCTCGGCTTCCACGCCTTCTCTCCCTACGGCCTCGACGAGTCGGTCATCAAAACGATCCCGCTCTCTCTCTACACGTCCAAAACGACGTCGACCGGTTTGAATAATCCTCTCAGTAAAGACTGCGCCGTTTGCTTGATCGAGTTCCAAGACGACGACTACGTACGCACTCTTCCGGTCTGTTCGCACGTGTTTCACGTGGACTGCATCGACATGTGGCTTCGATCTCACGCCAACTGTCCTCTCTGCCGTGCCGGAATATTCCGCCCGGAGTCTCCGTTCGTTCCGTTGATGGCCGCCAGGATCCGGCCGAGCCTCGACGACGCCGTTTTCAGGAGCATCGCGCTCGAGCCGCTTGCCGAAGCTCCGGCGTCTCGGGATTCCGATTCGATCGTCACCGAGATCGAACGGTGCGCGGAGGAGCGGTCGCCGAGGAGGAGCTCCAACTACTGGGAGGATTATCGGATCAACGGCGGAGATTTCGTCCTGAAGCGGTCACACTCGTTCGGATTCGAGCGGAGCTCGGCGTCAGCGGAGAGGATGATGGTGACGGAGCCAGCGACGGCGTCACCGTGGCGGTACCGGAGAGGAAGCTTCTGGAGCAAGCGGCCGTCGCCCTTCGGGTCGTTGACGAAGGCTCGGGTCTTCTCCTTCAGGTCAACGTACAGAGGCGGCGTGAATATGAAATCGCCTTTCTTCCGCCGGAAATGCTTCTTCCCGCTGACGGAGCCGAGCGCGAGATTCTCCGGCGGCGGCGCAGGAGGATCGTCTCGCCGGAGCAAGTCGATGACGAGTCCGATGTTCATGAGATCATCGGCGATGTCAGCTTTCTCGTCGAGCCGCCTCCGGTGCGGAGATCCAGAGGCGTTGTTATCGCCAGAGAGGTTTAACAGAAGATAG

Protein Analysis

409

Amino Acids

45.62

Weight (kDa)

9.96

Isoelectric Point (pI)

84.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012522)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 371
AatII GACGTC 1 cut(s) 419
Acc65I GGTACC 1 cut(s) 906
AccB1I GGYRCC 2 cut(s) 243, 906
AccB7I CCANNNNNTGG 1 cut(s) 777
AccBSI CCGCTC 4 cut(s) 261, 391, 751, 844
AccI GTMKAC 1 cut(s) 419
AccII CGCG 4 cut(s) 45, 671, 743, 1064
AclWI GGATC 6 cut(s) 379, 625, 638, 800, 1099, 1178
AcoI YGGCCR 4 cut(s) 324, 621, 635, 935
AcuI CTGAAG 2 cut(s) 836, 964
AcvI CACGTG 2 cut(s) 517, 526
AcyI GRCGYC 6 cut(s) 244, 416, 651, 698, 854, 893
AfaI GTAC 5 cut(s) 113, 305, 492, 908, 992
AfiI CCNNNNNNNGG 4 cut(s) 633, 660, 777, 1051
AflIII ACRYGT 4 cut(s) 205, 402, 516, 540
AgeI ACCGGT 1 cut(s) 422
AgsI TTSAA 1 cut(s) 430
AjiI CACGTC 2 cut(s) 208, 405
AjnI CCWGG 1 cut(s) 626
AloI GAACNNNNNNTCC 2 cut(s) 590, 622
AluBI AGCT 7 cut(s) 17, 23, 692, 768, 849, 921, 1154
AluI AGCT 7 cut(s) 17, 23, 692, 768, 849, 921, 1154
Alw21I GWGCWC 2 cut(s) 770, 851
Alw26I GTCTC 3 cut(s) 606, 705, 1101
AlwI GGATC 6 cut(s) 379, 625, 638, 800, 1099, 1178
Ama87I CYCGRG 3 cut(s) 674, 702, 966
AoxI GGCC 5 cut(s) 324, 358, 621, 635, 935
ApeKI GCWGC 3 cut(s) 8, 11, 14
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AsiGI ACCGGT 1 cut(s) 422
Asp700I GAANNNNTTC 1 cut(s) 1037
Asp718I GGTACC 1 cut(s) 906
AspLEI GCGC 7 cut(s) 47, 246, 455, 673, 743, 1064, 1085
AsuC2I CCSGG 2 cut(s) 323, 596
AsuHPI GGTGA 3 cut(s) 715, 886, 888
AvaI CYCGRG 3 cut(s) 674, 702, 966
BamHI GGATCC 1 cut(s) 630
BanI GGYRCC 2 cut(s) 243, 906
BanII GRGCYC 2 cut(s) 770, 851
BarI GAAGNNNNNNTAC 2 cut(s) 483, 515
BbrPI CACGTG 2 cut(s) 517, 526
BbsI GAAGAC 1 cut(s) 964
Bbv12I GWGCWC 2 cut(s) 770, 851
BbvI GCAGC 1 cut(s) 26
BccI CCATC 6 cut(s) 34, 74, 125, 287, 613, 865
BcgI CGANNNNNNTGC 6 cut(s) 655, 665, 689, 699, 1074, 1108
BciT130I CCWGG 1 cut(s) 628
BcnI CCSGG 2 cut(s) 323, 596
BcoDI GTCTC 3 cut(s) 606, 705, 1101
BfaI CTAG 1 cut(s) 290
BfmI CTRYAG 1 cut(s) 12
BfoI RGCGCY 1 cut(s) 247
Bme1390I CCNGG 3 cut(s) 323, 596, 628
BmeT110I CYCGRG 3 cut(s) 674, 702, 966
BmgBI CACGTC 2 cut(s) 208, 405
BmiI GGNNCC 5 cut(s) 245, 632, 882, 908, 1056
BmrFI CCNGG 3 cut(s) 323, 596, 628
BmrI ACTGGG 1 cut(s) 787
BmsI GCATC 3 cut(s) 101, 543, 675
BmuI ACTGGG 1 cut(s) 787
BpiI GAAGAC 1 cut(s) 964
BplI GAGNNNNNCTC 2 cut(s) 833, 865
BpmI CTGGAG 1 cut(s) 946
BpuMI CCSGG 2 cut(s) 323, 596
BsaAI YACGTR 3 cut(s) 490, 517, 526
BsaHI GRCGYC 6 cut(s) 244, 416, 651, 698, 854, 893
BsaJI CCNNGG 5 cut(s) 144, 299, 331, 758, 899
BsaWI WCCGGW 4 cut(s) 422, 502, 909, 1173
BsaXI ACNNNNNCTCC 8 cut(s) 257, 287, 590, 620, 737, 767, 795, 825
Bsc4I CCNNNNNNNGG 4 cut(s) 633, 660, 777, 1051
Bse118I RCCGGY 1 cut(s) 422
Bse1I ACTGG 1 cut(s) 782
BseBI CCWGG 1 cut(s) 628
BseDI CCNNGG 5 cut(s) 144, 299, 331, 758, 899
BseGI GGATG 2 cut(s) 210, 873
BseLI CCNNNNNNNGG 4 cut(s) 633, 660, 777, 1051
BseMII CTCAG 1 cut(s) 454
BseNI ACTGG 1 cut(s) 782
BseRI GAGGAG 4 cut(s) 265, 761, 775, 778
BseX3I CGGCCG 3 cut(s) 324, 635, 935
BseXI GCAGC 1 cut(s) 26
BsgI GTGCAG 1 cut(s) 24
Bsh1236I CGCG 4 cut(s) 45, 671, 743, 1064
Bsh1285I CGRYCG 6 cut(s) 327, 423, 638, 720, 755, 938
BshFI GGCC 5 cut(s) 326, 360, 623, 637, 937
BshNI GGYRCC 2 cut(s) 243, 906
BshTI ACCGGT 1 cut(s) 422
BsiEI CGRYCG 6 cut(s) 327, 423, 638, 720, 755, 938
BsiHKAI GWGCWC 2 cut(s) 770, 851
BsiHKCI CYCGRG 3 cut(s) 674, 702, 966
BsiWI CGTACG 1 cut(s) 490
BslI CCNNNNNNNGG 4 cut(s) 633, 660, 777, 1051
BsmAI GTCTC 3 cut(s) 606, 705, 1101
BsmBI CGTCTC 2 cut(s) 705, 1101
BsnI GGCC 5 cut(s) 326, 360, 623, 637, 937
BsoBI CYCGRG 3 cut(s) 674, 702, 966
Bsp1286I GDGCHC 2 cut(s) 770, 851
Bsp19I CCATGG 1 cut(s) 144
BspANI GGCC 5 cut(s) 326, 360, 623, 637, 937
BspCNI CTCAG 1 cut(s) 453
BspFNI CGCG 4 cut(s) 45, 671, 743, 1064
BspHI TCATGA 1 cut(s) 1131
BspLI GGNNCC 5 cut(s) 245, 632, 882, 908, 1056
BspMAI CTGCAG 1 cut(s) 16
BspPI GGATC 6 cut(s) 379, 625, 638, 800, 1099, 1178
BspT107I GGYRCC 2 cut(s) 243, 906
BsrBI CCGCTC 4 cut(s) 261, 391, 751, 844
BsrFI RCCGGY 1 cut(s) 422
BsrI ACTGG 1 cut(s) 782
BssAI RCCGGY 1 cut(s) 422
BssECI CCNNGG 5 cut(s) 144, 299, 331, 758, 899
BssNI GRCGYC 6 cut(s) 244, 416, 651, 698, 854, 893
BssT1I CCWWGG 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 628
Bst4CI ACNGT 4 cut(s) 303, 566, 738, 900
Bst6I CTCTTC 1 cut(s) 504
BstACI GRCGYC 6 cut(s) 244, 416, 651, 698, 854, 893
BstBAI YACGTR 3 cut(s) 490, 517, 526
BstC8I GCNNGC 5 cut(s) 43, 242, 684, 885, 932
BstDEI CTNAG 1 cut(s) 440
BstDSI CCRYGG 3 cut(s) 144, 299, 899
BstF5I GGATG 2 cut(s) 210, 873
BstFNI CGCG 4 cut(s) 45, 671, 743, 1064
BstH2I RGCGCY 1 cut(s) 247
BstHHI GCGC 7 cut(s) 47, 246, 455, 673, 743, 1064, 1085
BstMAI GTCTC 3 cut(s) 606, 705, 1101
BstMCI CGRYCG 6 cut(s) 327, 423, 638, 720, 755, 938
BstNI CCWGG 1 cut(s) 628
BstNSI RCATGY 1 cut(s) 544
BstSCI CCNGG 3 cut(s) 321, 594, 626
BstSFI CTRYAG 1 cut(s) 12
BstSNI TACGTA 1 cut(s) 490
BstUI CGCG 4 cut(s) 45, 671, 743, 1064
BstV1I GCAGC 1 cut(s) 26
BstV2I GAAGAC 1 cut(s) 964
BstX2I RGATCY 2 cut(s) 630, 1183
BstYI RGATCY 2 cut(s) 630, 1183
BstZI CGGCCG 3 cut(s) 324, 635, 935
BsuRI GGCC 5 cut(s) 326, 360, 623, 637, 937
BtgI CCRYGG 3 cut(s) 144, 299, 899
BtgZI GCGATG 3 cut(s) 12, 652, 1160
BtrI CACGTC 2 cut(s) 208, 405
BtsCI GGATG 2 cut(s) 210, 873
Cac8I GCNNGC 5 cut(s) 43, 242, 684, 885, 932
CciI TCATGA 1 cut(s) 1131
CfoI GCGC 7 cut(s) 47, 246, 455, 673, 743, 1064, 1085
Cfr10I RCCGGY 1 cut(s) 422
CseI GACGC 5 cut(s) 246, 659, 687, 843, 882
Csp6I GTAC 5 cut(s) 112, 304, 491, 907, 991
CspAI ACCGGT 1 cut(s) 422
CviAII CATG 4 cut(s) 89, 145, 541, 1132
CviQI GTAC 5 cut(s) 112, 304, 491, 907, 991
DdeI CTNAG 1 cut(s) 440
DinI GGCGCC 1 cut(s) 245
DrdI GACNNNNNNGTC 1 cut(s) 371
DseDI GACNNNNNNGTC 1 cut(s) 371
EaeI YGGCCR 4 cut(s) 324, 621, 635, 935
EagI CGGCCG 3 cut(s) 324, 635, 935
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
EciI GGCGGA 5 cut(s) 90, 215, 581, 816, 1016
Ecl136II GAGCTC 2 cut(s) 768, 849
EclXI CGGCCG 3 cut(s) 324, 635, 935
Eco105I TACGTA 1 cut(s) 490
Eco130I CCWWGG 1 cut(s) 144
Eco24I GRGCYC 2 cut(s) 770, 851
Eco52I CGGCCG 3 cut(s) 324, 635, 935
Eco53kI GAGCTC 2 cut(s) 768, 849
Eco57I CTGAAG 2 cut(s) 836, 964
Eco72I CACGTG 2 cut(s) 517, 526
Eco88I CYCGRG 3 cut(s) 674, 702, 966
EcoICRI GAGCTC 2 cut(s) 768, 849
EcoRII CCWGG 1 cut(s) 626
EcoT14I CCWWGG 1 cut(s) 144
EcoT22I ATGCAT 1 cut(s) 94
EcoT38I GRGCYC 2 cut(s) 770, 851
EgeI GGCGCC 1 cut(s) 245
EheI GGCGCC 1 cut(s) 245
ErhI CCWWGG 1 cut(s) 144
Esp3I CGTCTC 2 cut(s) 705, 1101
FaeI CATG 4 cut(s) 92, 148, 544, 1135
FaiI YATR 6 cut(s) 34, 90, 146, 542, 1010, 1133
FatI CATG 4 cut(s) 88, 144, 540, 1131
FauI CCCGC 5 cut(s) 138, 197, 222, 396, 1053
FblI GTMKAC 1 cut(s) 419
FokI GGATG 2 cut(s) 197, 880
FriOI GRGCYC 2 cut(s) 770, 851
FspBI CTAG 1 cut(s) 290
GlaI GCGC 7 cut(s) 46, 245, 454, 672, 742, 1063, 1084
GsuI CTGGAG 1 cut(s) 946
HaeII RGCGCY 1 cut(s) 247
HaeIII GGCC 5 cut(s) 326, 360, 623, 637, 937
HgaI GACGC 5 cut(s) 246, 659, 687, 843, 882
HhaI GCGC 7 cut(s) 47, 246, 455, 673, 743, 1064, 1085
Hin1I GRCGYC 6 cut(s) 244, 416, 651, 698, 854, 893
Hin1II CATG 4 cut(s) 92, 148, 544, 1135
Hin6I GCGC 7 cut(s) 45, 244, 453, 671, 741, 1062, 1083
HinP1I GCGC 7 cut(s) 45, 244, 453, 671, 741, 1062, 1083
HincII GTYRAC 3 cut(s) 420, 957, 987
HindII GTYRAC 3 cut(s) 420, 957, 987
HindIII AAGCTT 1 cut(s) 919
HinfI GANTC 9 cut(s) 293, 308, 368, 599, 707, 713, 837, 1068, 1120
HphI GGTGA 3 cut(s) 715, 886, 888
Hpy166II GTNNAC 4 cut(s) 420, 529, 957, 987
Hpy188I TCNGA 4 cut(s) 712, 792, 836, 1125
Hpy188III TCNNGA 6 cut(s) 661, 704, 814, 925, 1132, 1187
Hpy8I GTNNAC 4 cut(s) 420, 529, 957, 987
HpyAV CCTTC 5 cut(s) 178, 355, 955, 955, 988
HpyCH4III ACNGT 4 cut(s) 303, 566, 738, 900
HpyCH4IV ACGT 7 cut(s) 207, 404, 416, 489, 516, 525, 989
HpyCH4V TGCA 4 cut(s) 14, 41, 92, 534
HpyF3I CTNAG 1 cut(s) 440
HpySE526I ACGT 7 cut(s) 207, 404, 416, 489, 516, 525, 989
Hsp92I GRCGYC 6 cut(s) 244, 416, 651, 698, 854, 893
Hsp92II CATG 4 cut(s) 92, 148, 544, 1135
HspAI GCGC 7 cut(s) 45, 244, 453, 671, 741, 1062, 1083
KasI GGCGCC 1 cut(s) 243
KpnI GGTACC 1 cut(s) 910
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 3 cut(s) 101, 543, 675
MaeI CTAG 1 cut(s) 290
MaeII ACGT 7 cut(s) 207, 404, 416, 489, 516, 525, 989
MaeIII GTNAC 5 cut(s) 178, 721, 822, 874, 894
MbiI CCGCTC 4 cut(s) 261, 391, 751, 844
MboII GAAGA 4 cut(s) 491, 964, 1015, 1033
MflI RGATCY 2 cut(s) 630, 1183
MhlI GDGCHC 2 cut(s) 770, 851
Mly113I GGCGCC 1 cut(s) 244
MlyI GAGTC 5 cut(s) 287, 302, 377, 608, 1129
MmeI TCCRAC 2 cut(s) 256, 795
Mph1103I ATGCAT 1 cut(s) 94
MroXI GAANNNNTTC 1 cut(s) 1037
MseI TTAA 1 cut(s) 1215
MslI CAYNNNNRTG 1 cut(s) 539
MspA1I CMGCKG 2 cut(s) 860, 1048
MspR9I CCNGG 3 cut(s) 323, 596, 628
MvaI CCWGG 1 cut(s) 628
MvnI CGCG 4 cut(s) 45, 671, 743, 1064
NarI GGCGCC 1 cut(s) 244
NciI CCSGG 2 cut(s) 323, 596
NcoI CCATGG 1 cut(s) 144
NlaIII CATG 4 cut(s) 92, 148, 544, 1135
NlaIV GGNNCC 5 cut(s) 245, 632, 882, 908, 1056
NmeAIII GCCGAG 5 cut(s) 312, 663, 783, 830, 1083
NmuCI GTSAC 5 cut(s) 178, 721, 822, 874, 894
NsiI ATGCAT 1 cut(s) 94
NspI RCATGY 1 cut(s) 544
PaeR7I CTCGAG 1 cut(s) 674
PagI TCATGA 1 cut(s) 1131
PciI ACATGT 1 cut(s) 540
PcsI WCGNNNNNNNCGW 7 cut(s) 363, 410, 486, 522, 651, 884, 896
PdmI GAANNNNTTC 1 cut(s) 1037
PfeI GAWTC 4 cut(s) 707, 713, 837, 1068
Pfl23II CGTACG 1 cut(s) 490
PflFI GACNNNGTC 1 cut(s) 892
PflMI CCANNNNNTGG 1 cut(s) 777
PinAI ACCGGT 1 cut(s) 422
Ple19I CGATCG 1 cut(s) 720
PleI GAGTC 5 cut(s) 287, 302, 376, 607, 1128
PluTI GGCGCC 1 cut(s) 247
PmaCI CACGTG 2 cut(s) 517, 526
PmlI CACGTG 2 cut(s) 517, 526
PpsI GAGTC 5 cut(s) 287, 302, 376, 607, 1128
Ppu21I YACGTR 3 cut(s) 490, 517, 526
PscI ACATGT 1 cut(s) 540
Psp124BI GAGCTC 2 cut(s) 770, 851
Psp6I CCWGG 1 cut(s) 626
PspCI CACGTG 2 cut(s) 517, 526
PspGI CCWGG 1 cut(s) 626
PspLI CGTACG 1 cut(s) 490
PspN4I GGNNCC 5 cut(s) 245, 632, 882, 908, 1056
PspXI VCTCGAGB 1 cut(s) 674
PstI CTGCAG 1 cut(s) 16
PsuI RGATCY 2 cut(s) 630, 1183
PsyI GACNNNGTC 1 cut(s) 892
PvuI CGATCG 1 cut(s) 720
RsaI GTAC 5 cut(s) 113, 305, 492, 908, 992
RsaNI GTAC 5 cut(s) 112, 304, 491, 907, 991
RseI CAYNNNNRTG 1 cut(s) 539
SacI GAGCTC 2 cut(s) 770, 851
SalI GTCGAC 1 cut(s) 418
SaqAI TTAA 1 cut(s) 1215
SchI GAGTC 5 cut(s) 287, 302, 377, 608, 1129
ScrFI CCNGG 3 cut(s) 323, 596, 628
SduI GDGCHC 2 cut(s) 770, 851
SfaNI GCATC 3 cut(s) 101, 543, 675
SfcI CTRYAG 1 cut(s) 12
SfoI GGCGCC 1 cut(s) 245
Sfr274I CTCGAG 1 cut(s) 674
SlaI CTCGAG 1 cut(s) 674
SmiMI CAYNNNNRTG 1 cut(s) 539
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
SnaBI TACGTA 1 cut(s) 490
SspDI GGCGCC 1 cut(s) 243
SspI AATATT 1 cut(s) 588
SspMI CTAG 1 cut(s) 290
SstI GAGCTC 2 cut(s) 770, 851
StyD4I CCNGG 3 cut(s) 321, 594, 626
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 4 cut(s) 303, 566, 738, 900
TaiI ACGT 7 cut(s) 210, 407, 419, 492, 519, 528, 992
TaqII GACCGA 1 cut(s) 361
TauI GCSGC 9 cut(s) 249, 261, 626, 682, 937, 1002, 1080, 1083, 1170
TfiI GAWTC 4 cut(s) 707, 713, 837, 1068
Tru1I TTAA 1 cut(s) 1215
Tru9I TTAA 1 cut(s) 1215
TseFI GTSAC 5 cut(s) 178, 721, 822, 874, 894
TseI GCWGC 3 cut(s) 8, 11, 14
Tsp45I GTSAC 5 cut(s) 178, 721, 822, 874, 894
TspDTI ATGAA 2 cut(s) 1025, 1120
TspGWI ACGGA 4 cut(s) 594, 603, 893, 1067
Tth111I GACNNNGTC 1 cut(s) 892
Van91I CCANNNNNTGG 1 cut(s) 777
XceI RCATGY 1 cut(s) 544
XhoI CTCGAG 1 cut(s) 674
XmiI GTMKAC 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 1037
XspI CTAG 1 cut(s) 290
ZraI GACGTC 1 cut(s) 417
Zsp2I ATGCAT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.