Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8088512.1

Orthogroup ID

OG0012522

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 433

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8088512.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atggttcccgccgcgtccccatccccttctcctgcaccctcccccaccccaacattctccacccccctcaccaccctcacaaaccccaacgccactctcctccatgcatcatcctcatcatatccgccgtccaagctccccatcgacttctccccgccgctcatcgccatggtcgtcgtcgtcgccaccgccttcttaatcgtcacctactcccgcctcatctcccgccacgtcatccccccgatcatccgattctcccgccactgccgccgccgtcgccgccgctcctacctcccctcctccatcggcgacctcgactccccgccctacgactcgtcgttcgaccccacggacggcttccatgtcttctccccatacggcctcgacgagtcggtgatcaagaccataccgctgtcgctctacaccgccaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

144

Amino Acids

15.71

Weight (kDa)

9.72

Isoelectric Point (pI)

90.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18930 AT3G18930 AT3G18930
fragaria_vesca	FvH4_2g07470
malus_domestica	MD10G1085100.v1.1
prunus_persica	Prupe.8G108300_v2.0.a1
pyrus_communis	pycom10g06670
rosa_laevigata	RLG00000014460
rosa_multiflora	Rmu_co8088512.1_g000001 Rmu_co8388237.1_g000001 Rmu_sc0006019.1_g000006 Rmu_sc0015236.1_g000002
rosa_roxburghii	Rroxscaffold_7G00207740
rosa_rugosa	Rorug05G0594900
rosa_samantha	Rh6AG114300 Rh6BG108500 Rh6CG105900 Rh6DG096300
rosa_wichuraiana	Rw6G009800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	160, 285
AccII	CGCG	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	353
AjiI	CACGTC	1 cut(s)	232
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
AoxI	GGCC	1 cut(s)	379
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AsuHPI	GGTGA	3 cut(s)	61, 196, 406
BbsI	GAAGAC	1 cut(s)	358
BccI	CCATC	3 cut(s)	28, 149, 311
BceAI	ACGGC	4 cut(s)	112, 258, 370, 394
BclI	TGATCA	1 cut(s)	396
BisI	GCNGC	6 cut(s)	12, 158, 268, 271, 280, 283
BlsI	GCNGC	6 cut(s)	13, 159, 269, 272, 281, 284
BmgBI	CACGTC	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	358
BsaJI	CCNNGG	2 cut(s)	168, 348
BsaXI	ACNNNNNCTCC	4 cut(s)	281, 302, 311, 332
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
BseDI	CCNNGG	2 cut(s)	168, 348
BseGI	GGATG	4 cut(s)	20, 110, 234, 246
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseRI	GAGGAG	2 cut(s)	89, 289
BsgI	GTGCAG	1 cut(s)	18
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	1 cut(s)	381
BslI	CCNNNNNNNGG	1 cut(s)	353
BsnI	GGCC	1 cut(s)	381
Bsp143I	GATC	2 cut(s)	243, 396
Bsp19I	CCATGG	1 cut(s)	168
BspANI	GGCC	1 cut(s)	381
BspFNI	CGCG	1 cut(s)	14
BspLI	GGNNCC	1 cut(s)	6
BsrBI	CCGCTC	2 cut(s)	160, 285
BssECI	CCNNGG	2 cut(s)	168, 348
BssMI	GATC	2 cut(s)	243, 396
BssT1I	CCWWGG	1 cut(s)	168
BstDSI	CCRYGG	2 cut(s)	168, 348
BstF5I	GGATG	4 cut(s)	20, 110, 234, 246
BstFNI	CGCG	1 cut(s)	14
BstKTI	GATC	2 cut(s)	246, 399
BstMBI	GATC	2 cut(s)	243, 396
BstMWI	GCNNNNNNNGC	4 cut(s)	133, 267, 276, 279
BstUI	CGCG	1 cut(s)	14
BstV2I	GAAGAC	1 cut(s)	358
BsuRI	GGCC	1 cut(s)	381
BtgI	CCRYGG	2 cut(s)	168, 348
BtgZI	GCGATG	1 cut(s)	148
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	4 cut(s)	20, 110, 234, 246
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	1 cut(s)	262
CseI	GACGC	1 cut(s)	3
CviAII	CATG	3 cut(s)	104, 169, 362
CviJI	RGCY	3 cut(s)	136, 357, 381
CviKI_1	RGCY	3 cut(s)	136, 357, 381
DpnI	GATC	2 cut(s)	245, 398
DpnII	GATC	2 cut(s)	243, 396
EciI	GGCGGA	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	3 cut(s)	107, 172, 365
FaiI	YATR	6 cut(s)	105, 121, 170, 363, 376, 407
FatI	CATG	3 cut(s)	103, 168, 361
FauI	CCCGC	6 cut(s)	16, 162, 221, 233, 266, 330
FbaI	TGATCA	1 cut(s)	396
Fnu4HI	GCNGC	6 cut(s)	12, 158, 268, 271, 280, 283
FokI	GGATG	4 cut(s)	7, 97, 221, 233
Fsp4HI	GCNGC	6 cut(s)	12, 158, 268, 271, 280, 283
GluI	GCNGC	6 cut(s)	12, 158, 268, 271, 280, 283
HaeIII	GGCC	1 cut(s)	381
HgaI	GACGC	1 cut(s)	3
Hin1II	CATG	3 cut(s)	107, 172, 365
HinfI	GANTC	4 cut(s)	252, 317, 332, 389
HphI	GGTGA	3 cut(s)	61, 196, 406
Hpy188I	TCNGA	1 cut(s)	251
Hpy188III	TCNNGA	1 cut(s)	400
Hpy99I	CGWCG	6 cut(s)	179, 182, 185, 279, 340, 389
HpyAV	CCTTC	2 cut(s)	36, 202
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	35, 107
HpyF10VI	GCNNNNNNNGC	4 cut(s)	133, 267, 276, 279
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	3 cut(s)	107, 172, 365
Ksp22I	TGATCA	1 cut(s)	396
Kzo9I	GATC	2 cut(s)	243, 396
LmnI	GCTCC	2 cut(s)	141, 290
LpnPI	CCDG	1 cut(s)	45
LweI	GCATC	1 cut(s)	116
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	2 cut(s)	245, 398
MbiI	CCGCTC	2 cut(s)	160, 285
MboI	GATC	2 cut(s)	243, 396
MboII	GAAGA	1 cut(s)	358
MlyI	GAGTC	3 cut(s)	311, 326, 398
Mph1103I	ATGCAT	1 cut(s)	109
MseI	TTAA	1 cut(s)	197
MslI	CAYNNNNRTG	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	412
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	4 cut(s)	133, 267, 276, 279
NcoI	CCATGG	1 cut(s)	168
NdeII	GATC	2 cut(s)	243, 396
NlaIII	CATG	3 cut(s)	107, 172, 365
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	202
NsiI	ATGCAT	1 cut(s)	109
PcsI	WCGNNNNNNNCGW	3 cut(s)	171, 312, 384
PfeI	GAWTC	1 cut(s)	252
PkrI	GCNGC	6 cut(s)	13, 159, 269, 272, 281, 284
PleI	GAGTC	3 cut(s)	311, 326, 397
PpsI	GAGTC	3 cut(s)	311, 326, 397
PspN4I	GGNNCC	1 cut(s)	6
RseI	CAYNNNNRTG	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	197
SatI	GCNGC	6 cut(s)	12, 158, 268, 271, 280, 283
Sau3AI	GATC	2 cut(s)	243, 396
SchI	GAGTC	3 cut(s)	311, 326, 398
SetI	ASST	5 cut(s)	138, 209, 234, 294, 315
SfaNI	GCATC	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	167
StyI	CCWWGG	1 cut(s)	168
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	4 cut(s)	144, 315, 342, 384
TauI	GCSGC	6 cut(s)	14, 160, 270, 273, 282, 285
TfiI	GAWTC	1 cut(s)	252
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TscAI	CASTG	1 cut(s)	269
TseFI	GTSAC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	202
TspGWI	ACGGA	1 cut(s)	365
TspRI	CASTG	1 cut(s)	269
Zsp2I	ATGCAT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.