AT3G20510

Transmembrane proteins 14C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014470
Physical Location & Seq
Forward (+)
7160677 .. 7162395
1719 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G20510.1

Sequence Viewer

Length: 360 bp
ATGCATGATTTTTGCTTCACTATCCCGTACGGGATGCTTCTCATCGGCGGAGGATTTATCGGGTACATGAAGAAAGGAAGTATAACATCTTTCGCCGGAGGTGCAGGCACTGGATTATTACTCATTCTCGCTGGTTATATCAGTCTCAAAGCTTTTGAGAAGAAGAAGAATTCCACTATTGCTATGGTTCTTCAGACAGTCATCGCAGCTGCTCTCACACTAGTCATGGGACAGCGTTACTTGCTGACTGGAAAGATTATGCCGGCTGGTTTGGTTGCTGGGATCAGTGCTCTCATGACCTGTTTTTACGTATACAAGATCGCTACTGGTGGCAATAAATTTCCAGCAAAAGCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tmemb_14

Protein Analysis

119

Amino Acids

12.51

Weight (kDa)

9.7

Isoelectric Point (pI)

27.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_14 PF03647 6 - 103 8.6e-26 Transmembrane proteins 14C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20510
fragaria_vesca FvH4_3g22450
malus_domestica MD03G1204200.v1.1 MD11G1221000.v1.1
prunus_persica Prupe.4G211200_v2.0.a1
pyrus_communis pycom03g15480
rosa_chinensis RchiOBHm_Chr5g0039111
rosa_multiflora Rmu_sc0000533.1_g000028 Rmu_ssc0000410.1_g000002
rosa_roxburghii Rroxscaffold_1G00041990
rosa_rugosa Rorug05G0176500
rosa_samantha Rh5AG263000 Rh5BG267800 Rh5CG300500 Rh5DG274400
rosa_wichuraiana Rw0G008280 Rw5G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 312
AciI CCGC 1 cut(s) 48
AclWI GGATC 1 cut(s) 290
AcsI RAATTY 2 cut(s) 169, 338
AcuI CTGAAG 1 cut(s) 176
AfaI GTAC 2 cut(s) 29, 65
AhlI ACTAGT 1 cut(s) 220
AluBI AGCT 3 cut(s) 152, 209, 353
AluI AGCT 3 cut(s) 152, 209, 353
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 1 cut(s) 290
AlwNI CAGNNNCTG 1 cut(s) 110
ApeKI GCWGC 2 cut(s) 206, 209
ApoI RAATTY 2 cut(s) 169, 338
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 2 cut(s) 196, 218
BcoDI GTCTC 1 cut(s) 149
BcuI ACTAGT 1 cut(s) 220
BfaI CTAG 1 cut(s) 221
BisI GCNGC 2 cut(s) 207, 210
BlsI GCNGC 2 cut(s) 208, 211
BmsI GCATC 1 cut(s) 24
BsaAI YACGTR 1 cut(s) 310
Bse118I RCCGGY 1 cut(s) 262
Bse1I ACTGG 3 cut(s) 115, 253, 331
BseGI GGATG 1 cut(s) 39
BseNI ACTGG 3 cut(s) 115, 253, 331
BseXI GCAGC 2 cut(s) 196, 218
BseYI CCCAGC 1 cut(s) 278
BsgI GTGCAG 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 292
BsiSI CCGG 2 cut(s) 96, 263
BsiWI CGTACG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 243
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 2 cut(s) 282, 318
BspACI CCGC 1 cut(s) 48
BspHI TCATGA 1 cut(s) 294
BspPI GGATC 1 cut(s) 290
BsrFI RCCGGY 1 cut(s) 262
BsrI ACTGG 3 cut(s) 115, 253, 331
BssAI RCCGGY 1 cut(s) 262
BssMI GATC 2 cut(s) 282, 318
BssNAI GTATAC 1 cut(s) 313
Bst1107I GTATAC 1 cut(s) 313
Bst4CI ACNGT 1 cut(s) 199
BstBAI YACGTR 1 cut(s) 310
BstC8I GCNNGC 2 cut(s) 106, 264
BstF5I GGATG 1 cut(s) 39
BstKTI GATC 2 cut(s) 285, 321
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 2 cut(s) 282, 318
BstMWI GCNNNNNNNGC 2 cut(s) 101, 241
BstSNI TACGTA 1 cut(s) 310
BstV1I GCAGC 2 cut(s) 196, 218
BstZ17I GTATAC 1 cut(s) 313
BtgZI GCGATG 1 cut(s) 187
BtsCI GGATG 1 cut(s) 39
BtsIMutI CAGTG 2 cut(s) 108, 292
Cac8I GCNNGC 2 cut(s) 106, 264
CaiI CAGNNNCTG 1 cut(s) 110
CciI TCATGA 1 cut(s) 294
Cfr10I RCCGGY 1 cut(s) 262
Csp6I GTAC 2 cut(s) 28, 64
CviAII CATG 4 cut(s) 5, 67, 226, 295
CviJI RGCY 4 cut(s) 152, 209, 266, 353
CviKI_1 RGCY 4 cut(s) 152, 209, 266, 353
CviQI GTAC 2 cut(s) 28, 64
DpnI GATC 2 cut(s) 284, 320
DpnII GATC 2 cut(s) 282, 318
EciI GGCGGA 1 cut(s) 63
Eco105I TACGTA 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 176
EcoRI GAATTC 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 8, 70, 229, 298
FaiI YATR 9 cut(s) 6, 68, 83, 138, 185, 227, 260, 296, 313
FaqI GGGAC 1 cut(s) 243
FatI CATG 4 cut(s) 4, 66, 225, 294
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 2 cut(s) 207, 210
FokI GGATG 1 cut(s) 46
Fsp4HI GCNGC 2 cut(s) 207, 210
FspBI CTAG 1 cut(s) 221
GluI GCNGC 2 cut(s) 207, 210
GsaI CCCAGC 1 cut(s) 282
HapII CCGG 2 cut(s) 96, 263
Hin1II CATG 4 cut(s) 8, 70, 229, 298
HindIII AAGCTT 1 cut(s) 150
HpaII CCGG 2 cut(s) 96, 263
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 1 cut(s) 195
Hpy188III TCNNGA 1 cut(s) 295
Hpy8I GTNNAC 1 cut(s) 313
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 2 cut(s) 4, 104
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 241
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 4 cut(s) 8, 70, 229, 298
KroI GCCGGC 1 cut(s) 262
KroNI GCCGGC 1 cut(s) 264
Kzo9I GATC 2 cut(s) 282, 318
Lsp1109I GCAGC 2 cut(s) 196, 218
LweI GCATC 1 cut(s) 24
MaeI CTAG 1 cut(s) 221
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 236
MalI GATC 2 cut(s) 284, 320
MboI GATC 2 cut(s) 282, 318
MboII GAAGA 5 cut(s) 82, 172, 175, 178, 182
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 2 cut(s) 169, 338
MnlI CCTC 2 cut(s) 44, 92
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 1 cut(s) 262
MspA1I CMGCKG 1 cut(s) 209
MspI CCGG 2 cut(s) 96, 263
MwoI GCNNNNNNNGC 2 cut(s) 101, 241
NaeI GCCGGC 1 cut(s) 264
NdeII GATC 2 cut(s) 282, 318
NgoMIV GCCGGC 1 cut(s) 262
NlaIII CATG 4 cut(s) 8, 70, 229, 298
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 294
PdiI GCCGGC 1 cut(s) 264
Pfl23II CGTACG 1 cut(s) 27
PkrI GCNGC 2 cut(s) 208, 211
Ppu21I YACGTR 1 cut(s) 310
PspFI CCCAGC 1 cut(s) 278
PspLI CGTACG 1 cut(s) 27
PstNI CAGNNNCTG 1 cut(s) 110
PvuII CAGCTG 1 cut(s) 209
RsaI GTAC 2 cut(s) 29, 65
RsaNI GTAC 2 cut(s) 28, 64
SatI GCNGC 2 cut(s) 207, 210
Sau3AI GATC 2 cut(s) 282, 318
SduI GDGCHC 1 cut(s) 292
SetI ASST 6 cut(s) 103, 154, 211, 302, 312, 355
SfaNI GCATC 1 cut(s) 24
SnaBI TACGTA 1 cut(s) 310
SpeI ACTAGT 1 cut(s) 220
Sse9I AATT 2 cut(s) 169, 338
SsiI CCGC 1 cut(s) 48
SspMI CTAG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 312
TasI AATT 2 cut(s) 169, 338
TscAI CASTG 2 cut(s) 115, 292
TseI GCWGC 2 cut(s) 206, 209
TspDTI ATGAA 1 cut(s) 83
TspRI CASTG 2 cut(s) 115, 292
XapI RAATTY 2 cut(s) 169, 338
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 312
XspI CTAG 1 cut(s) 221
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.