Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0014470

Physical Location & Seq

Genomic Coordinates Forward (+)

16727880 .. 16730063

Gene Structure 2184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g15480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCACGATTTCTGCTTGACGATCCCCTACGGCCTGGTGCTGATCGGCGGAGGAGTTTTTGGGTATTTCAGGAAGGGGAGCACGGCTTCTTTGGCTGGAGGAGCAGGTATCGGATTGCTCCTCACTCTTGCTGGATATATCAGTCTCAAAGCCTTCGAGGGGAAGAAGAACTCGTATCCTGCTTTCATTCTTGAAACGGTTTGTGCTGCTCTCCTTACATGGGTCATGGGACAGCGCTATATGCAAACTTCTAAGATCATGCCAGCTGGTGTTGTTGCAGGTATCAGCGCTGTCATGACCGGATTTTATTTGTACAAAATTGCAACTGGTGGAAACCATATTCCGGCCAAGACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

120

Amino Acids

12.52

Weight (kDa)

9.62

Isoelectric Point (pI)

27.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20510
fragaria_vesca	FvH4_3g22450
malus_domestica	MD03G1204200.v1.1 MD11G1221000.v1.1
prunus_persica	Prupe.4G211200_v2.0.a1
pyrus_communis	pycom03g15480
rosa_chinensis	RchiOBHm_Chr5g0039111
rosa_multiflora	Rmu_sc0000533.1_g000028 Rmu_ssc0000410.1_g000002
rosa_roxburghii	Rroxscaffold_1G00041990
rosa_rugosa	Rorug05G0176500
rosa_samantha	Rh5AG263000 Rh5BG267800 Rh5CG300500 Rh5DG274400
rosa_wichuraiana	Rw0G008280 Rw5G024590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	95, 269
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	16
AcoI	YGGCCR	1 cut(s)	345
AfaI	GTAC	1 cut(s)	314
AfeI	AGCGCT	2 cut(s)	236, 289
AfiI	CCNNNNNNNGG	3 cut(s)	159, 220, 343
AgsI	TTSAA	1 cut(s)	194
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	16
Aor51HI	AGCGCT	2 cut(s)	236, 289
AoxI	GGCC	2 cut(s)	31, 345
ApeKI	GCWGC	1 cut(s)	206
AspLEI	GCGC	2 cut(s)	237, 290
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	193
BceAI	ACGGC	2 cut(s)	46, 99
BciT130I	CCWGG	1 cut(s)	35
BciVI	GTATCC	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	149
BfoI	RGCGCY	2 cut(s)	238, 291
BfuAI	ACCTGC	2 cut(s)	95, 269
BfuI	GTATCC	1 cut(s)	186
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	35
BpmI	CTGGAG	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 220, 343
Bse1I	ACTGG	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	35
BseLI	CCNNNNNNNGG	3 cut(s)	159, 220, 343
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	3 cut(s)	66, 110, 114
BseXI	GCAGC	1 cut(s)	193
BshFI	GGCC	2 cut(s)	33, 347
BsiHKAI	GWGCWC	1 cut(s)	83
BsiSI	CCGG	2 cut(s)	300, 344
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	3 cut(s)	159, 220, 343
BsmAI	GTCTC	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	2 cut(s)	33, 347
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	3 cut(s)	21, 42, 255
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	2 cut(s)	33, 347
BspHI	TCATGA	1 cut(s)	294
BspMI	ACCTGC	2 cut(s)	95, 269
BspPI	GGATC	1 cut(s)	16
BsrGI	TGTACA	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	331
BssMI	GATC	3 cut(s)	21, 42, 255
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	199
BstAUI	TGTACA	1 cut(s)	312
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	252
BstH2I	RGCGCY	2 cut(s)	238, 291
BstHHI	GCGC	2 cut(s)	237, 290
BstKTI	GATC	3 cut(s)	24, 45, 258
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	3 cut(s)	21, 42, 255
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 101, 241
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	193
BsuI	GTATCC	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	33, 347
BveI	ACCTGC	2 cut(s)	95, 269
Cac8I	GCNNGC	1 cut(s)	264
CciI	TCATGA	1 cut(s)	294
CfoI	GCGC	2 cut(s)	237, 290
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	4 cut(s)	219, 226, 259, 295
CviJI	RGCY	6 cut(s)	33, 86, 95, 152, 266, 347
CviKI_1	RGCY	6 cut(s)	33, 86, 95, 152, 266, 347
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	3 cut(s)	23, 44, 257
DpnII	GATC	3 cut(s)	21, 42, 255
EaeI	YGGCCR	1 cut(s)	345
EciI	GGCGGA	1 cut(s)	63
Eco47III	AGCGCT	2 cut(s)	236, 289
EcoRII	CCWGG	1 cut(s)	33
FaeI	CATG	4 cut(s)	222, 229, 262, 298
FaiI	YATR	8 cut(s)	138, 220, 227, 240, 242, 260, 296, 339
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	4 cut(s)	218, 225, 258, 294
Fnu4HI	GCNGC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	207
GlaI	GCGC	2 cut(s)	236, 289
GluI	GCNGC	1 cut(s)	207
GsuI	CTGGAG	1 cut(s)	117
HaeII	RGCGCY	2 cut(s)	238, 291
HaeIII	GGCC	2 cut(s)	33, 347
HapII	CCGG	2 cut(s)	300, 344
HhaI	GCGC	2 cut(s)	237, 290
Hin1II	CATG	4 cut(s)	222, 229, 262, 298
Hin6I	GCGC	2 cut(s)	235, 288
HinP1I	GCGC	2 cut(s)	235, 288
HpaII	CCGG	2 cut(s)	300, 344
Hpy188I	TCNGA	1 cut(s)	113
Hpy188III	TCNNGA	3 cut(s)	70, 191, 295
HpyAV	CCTTC	2 cut(s)	67, 163
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	4 cut(s)	4, 244, 278, 323
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 101, 241
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	222, 229, 262, 298
HspAI	GCGC	2 cut(s)	235, 288
Kzo9I	GATC	3 cut(s)	21, 42, 255
LmnI	GCTCC	3 cut(s)	78, 101, 123
Lsp1109I	GCAGC	1 cut(s)	193
MalI	GATC	3 cut(s)	23, 44, 257
MboI	GATC	3 cut(s)	21, 42, 255
MboII	GAAGA	2 cut(s)	175, 178
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	1 cut(s)	318
MnlI	CCTC	4 cut(s)	44, 92, 131, 151
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	2 cut(s)	300, 344
MspR9I	CCNGG	1 cut(s)	35
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	3 cut(s)	92, 101, 241
NdeII	GATC	3 cut(s)	21, 42, 255
NlaIII	CATG	4 cut(s)	222, 229, 262, 298
PagI	TCATGA	1 cut(s)	294
PkrI	GCNGC	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	3 cut(s)	21, 42, 255
ScrFI	CCNGG	1 cut(s)	35
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	3 cut(s)	109, 268, 283
Sse9I	AATT	1 cut(s)	318
SsiI	CCGC	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	156
TasI	AATT	1 cut(s)	318
TatI	WGTACW	1 cut(s)	312
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.