MD03G1204200.v1.1

UPF0136 membrane protein At2g26240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0014470
Physical Location & Seq
Forward (+)
27869800 .. 27872537
2738 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1204200.v1.1.491

Sequence Viewer

Length: 360 bp
ATGCACGATTTCTGCTTGACGATCCCCTACGGCCTGGTGCTGATCGGCGGAGGAGTTTTTGGGTATTTCAGGAAGGGGAGCACGGCTTCTTTGGCTGGAGGAGCGGGCATCGGATTGCTCCTCACTCTTGCTGGATATATGAGTCTCAAAGCCTTCGAGGGGAAGAAGAACTCGTATCCTGCTTTCATTCTCGAAACGGTTTGTGCTGCTCTTCTTACGTGGGTCATGGGACAGCGCTATATGCAAACTTCTAAGATCATGCCAGCTGGTGTTGTTGCTGGTATCAGCGCTGTCATGACCGGATTTTATTTGTACAAAATTGCAACTGGTGGAAACCATATCCCGGCCAAGACCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tmemb_14

Protein Analysis

120

Amino Acids

12.53

Weight (kDa)

9.62

Isoelectric Point (pI)

34.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_14 PF03647 6 - 103 2.5e-25 Transmembrane proteins 14C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20510
fragaria_vesca FvH4_3g22450
malus_domestica MD03G1204200.v1.1 MD11G1221000.v1.1
prunus_persica Prupe.4G211200_v2.0.a1
pyrus_communis pycom03g15480
rosa_chinensis RchiOBHm_Chr5g0039111
rosa_multiflora Rmu_sc0000533.1_g000028 Rmu_ssc0000410.1_g000002
rosa_roxburghii Rroxscaffold_1G00041990
rosa_rugosa Rorug05G0176500
rosa_samantha Rh5AG263000 Rh5BG267800 Rh5CG300500 Rh5DG274400
rosa_wichuraiana Rw0G008280 Rw5G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 104
AciI CCGC 2 cut(s) 48, 104
AclWI GGATC 1 cut(s) 16
AcoI YGGCCR 1 cut(s) 345
AfaI GTAC 1 cut(s) 314
AfeI AGCGCT 2 cut(s) 236, 289
AfiI CCNNNNNNNGG 2 cut(s) 159, 343
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 1 cut(s) 16
Aor51HI AGCGCT 2 cut(s) 236, 289
AoxI GGCC 2 cut(s) 31, 345
ApeKI GCWGC 1 cut(s) 206
AspLEI GCGC 2 cut(s) 237, 290
AsuC2I CCSGG 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 193
BceAI ACGGC 2 cut(s) 46, 99
BciT130I CCWGG 1 cut(s) 35
BciVI GTATCC 1 cut(s) 186
BcnI CCSGG 1 cut(s) 344
BcoDI GTCTC 1 cut(s) 149
BfoI RGCGCY 2 cut(s) 238, 291
BfuI GTATCC 1 cut(s) 186
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 2 cut(s) 35, 344
BmrFI CCNGG 2 cut(s) 35, 344
BmsI GCATC 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 344
BsaAI YACGTR 1 cut(s) 219
BsaWI WCCGGW 1 cut(s) 299
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 343
Bse1I ACTGG 1 cut(s) 331
BseBI CCWGG 1 cut(s) 35
BseLI CCNNNNNNNGG 2 cut(s) 159, 343
BseNI ACTGG 1 cut(s) 331
BseRI GAGGAG 3 cut(s) 66, 110, 114
BseXI GCAGC 1 cut(s) 193
BshFI GGCC 2 cut(s) 33, 347
BsiHKAI GWGCWC 1 cut(s) 83
BsiSI CCGG 2 cut(s) 300, 344
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 2 cut(s) 159, 343
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 243
BsnI GGCC 2 cut(s) 33, 347
Bsp1286I GDGCHC 1 cut(s) 83
Bsp1407I TGTACA 1 cut(s) 312
Bsp143I GATC 3 cut(s) 21, 42, 255
BspACI CCGC 2 cut(s) 48, 104
BspANI GGCC 2 cut(s) 33, 347
BspHI TCATGA 1 cut(s) 294
BspPI GGATC 1 cut(s) 16
BspQI GCTCTTC 1 cut(s) 216
BsrBI CCGCTC 1 cut(s) 104
BsrGI TGTACA 1 cut(s) 312
BsrI ACTGG 1 cut(s) 331
BssMI GATC 3 cut(s) 21, 42, 255
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 216
BstAUI TGTACA 1 cut(s) 312
BstBAI YACGTR 1 cut(s) 219
BstC8I GCNNGC 2 cut(s) 106, 264
BstDEI CTNAG 1 cut(s) 252
BstH2I RGCGCY 2 cut(s) 238, 291
BstHHI GCGC 2 cut(s) 237, 290
BstKTI GATC 3 cut(s) 24, 45, 258
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 3 cut(s) 21, 42, 255
BstMWI GCNNNNNNNGC 3 cut(s) 92, 101, 241
BstNI CCWGG 1 cut(s) 35
BstSCI CCNGG 2 cut(s) 33, 342
BstV1I GCAGC 1 cut(s) 193
BsuI GTATCC 1 cut(s) 186
BsuRI GGCC 2 cut(s) 33, 347
Cac8I GCNNGC 2 cut(s) 106, 264
CciI TCATGA 1 cut(s) 294
CfoI GCGC 2 cut(s) 237, 290
Csp6I GTAC 1 cut(s) 313
CviAII CATG 3 cut(s) 226, 259, 295
CviJI RGCY 6 cut(s) 33, 86, 95, 152, 266, 347
CviKI_1 RGCY 6 cut(s) 33, 86, 95, 152, 266, 347
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 1 cut(s) 252
DpnI GATC 3 cut(s) 23, 44, 257
DpnII GATC 3 cut(s) 21, 42, 255
EaeI YGGCCR 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
EciI GGCGGA 1 cut(s) 63
Eco47III AGCGCT 2 cut(s) 236, 289
EcoRII CCWGG 1 cut(s) 33
FaeI CATG 3 cut(s) 229, 262, 298
FaiI YATR 8 cut(s) 138, 140, 227, 240, 242, 260, 296, 339
FaqI GGGAC 1 cut(s) 243
FatI CATG 3 cut(s) 225, 258, 294
FauI CCCGC 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 207
GlaI GCGC 2 cut(s) 236, 289
GluI GCNGC 1 cut(s) 207
GsuI CTGGAG 1 cut(s) 117
HaeII RGCGCY 2 cut(s) 238, 291
HaeIII GGCC 2 cut(s) 33, 347
HapII CCGG 2 cut(s) 300, 344
HhaI GCGC 2 cut(s) 237, 290
Hin1II CATG 3 cut(s) 229, 262, 298
Hin6I GCGC 2 cut(s) 235, 288
HinP1I GCGC 2 cut(s) 235, 288
HinfI GANTC 1 cut(s) 142
HpaII CCGG 2 cut(s) 300, 344
Hpy188I TCNGA 1 cut(s) 113
Hpy188III TCNNGA 3 cut(s) 70, 191, 295
HpyAV CCTTC 2 cut(s) 67, 163
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 3 cut(s) 4, 244, 323
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 101, 241
HpyF3I CTNAG 1 cut(s) 252
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 3 cut(s) 229, 262, 298
HspAI GCGC 2 cut(s) 235, 288
Kzo9I GATC 3 cut(s) 21, 42, 255
LguI GCTCTTC 1 cut(s) 216
LmnI GCTCC 3 cut(s) 78, 101, 123
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 1 cut(s) 117
MaeII ACGT 1 cut(s) 218
MalI GATC 3 cut(s) 23, 44, 257
MbiI CCGCTC 1 cut(s) 104
MboI GATC 3 cut(s) 21, 42, 255
MboII GAAGA 3 cut(s) 175, 178, 203
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 1 cut(s) 318
MlyI GAGTC 1 cut(s) 151
MnlI CCTC 4 cut(s) 44, 92, 131, 151
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 2 cut(s) 300, 344
MspR9I CCNGG 2 cut(s) 35, 344
MvaI CCWGG 1 cut(s) 35
MwoI GCNNNNNNNGC 3 cut(s) 92, 101, 241
NciI CCSGG 1 cut(s) 344
NdeII GATC 3 cut(s) 21, 42, 255
NlaIII CATG 3 cut(s) 229, 262, 298
PagI TCATGA 1 cut(s) 294
PciSI GCTCTTC 1 cut(s) 216
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
Ppu21I YACGTR 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SapI GCTCTTC 1 cut(s) 216
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 3 cut(s) 21, 42, 255
SchI GAGTC 1 cut(s) 151
ScrFI CCNGG 2 cut(s) 35, 344
SduI GDGCHC 1 cut(s) 83
SetI ASST 2 cut(s) 221, 268
SfaNI GCATC 1 cut(s) 117
Sse9I AATT 1 cut(s) 318
SsiI CCGC 2 cut(s) 48, 104
StyD4I CCNGG 2 cut(s) 33, 342
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 221
TaqI TCGA 2 cut(s) 156, 192
TasI AATT 1 cut(s) 318
TatI WGTACW 1 cut(s) 312
TseI GCWGC 1 cut(s) 206
TspDTI ATGAA 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.