Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0014470

Physical Location & Seq

Genomic Coordinates Reverse (-)

34923642 .. 34926396

Gene Structure 2755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G024590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCACGATTTCTGCTTCACGATCCCCTACGGGCTTTTGCTGGTGGGTGGAGGAGTATTTGGGTATTTCAGGAAGGGGAGCACAGCTTCTCTGTTTGGAGGTGCAGGCATTGGATTGCTTCTCACTCTTGCTGGCTATCTCAGTCTCCAAGCCTTTCATAAGAAGAAGAACTCCCATCCTGCTCTGATTCTTCAAACAGTTTGTGCCGCCACACTAACATGGGTCATGGGACAACGCTATTTACAAACTTCTAAGATCATGCCAGCGGGTGTTGTTGCTGGCCTCAGTGTTCTCATGACAGGATTTTATCTCTACAAAATTGCAACTGGTGGCAACCACATTGCTGCAAAGACCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

119

Amino Acids

12.63

Weight (kDa)

9.9

Isoelectric Point (pI)

31.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tmemb_14	PF03647	6 - 103	1.6e-26	Transmembrane proteins 14C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0014470)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20510
fragaria_vesca	FvH4_3g22450
malus_domestica	MD03G1204200.v1.1 MD11G1221000.v1.1
prunus_persica	Prupe.4G211200_v2.0.a1
pyrus_communis	pycom03g15480
rosa_chinensis	RchiOBHm_Chr5g0039111
rosa_multiflora	Rmu_sc0000533.1_g000028 Rmu_ssc0000410.1_g000002
rosa_roxburghii	Rroxscaffold_1G00041990
rosa_rugosa	Rorug05G0176500
rosa_samantha	Rh5AG263000 Rh5BG267800 Rh5CG300500 Rh5DG274400
rosa_wichuraiana	Rw0G008280 Rw5G024590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	207, 266
AclWI	GGATC	1 cut(s)	16
AgsI	TTSAA	1 cut(s)	194
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	16
AoxI	GGCC	1 cut(s)	280
ApeKI	GCWGC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	149
BisI	GCNGC	2 cut(s)	207, 345
BlsI	GCNGC	2 cut(s)	208, 346
Bse1I	ACTGG	1 cut(s)	331
Bse3DI	GCAATG	1 cut(s)	339
BseGI	GGATG	1 cut(s)	175
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	2 cut(s)	154, 298
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	331
BsgI	GTGCAG	1 cut(s)	123
BshFI	GGCC	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	83
BslFI	GGGAC	1 cut(s)	243
BsmAI	GTCTC	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	21, 255
BspACI	CCGC	2 cut(s)	207, 266
BspANI	GGCC	1 cut(s)	282
BspCNI	CTCAG	2 cut(s)	153, 297
BspHI	TCATGA	1 cut(s)	294
BspPI	GGATC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	339
BsrI	ACTGG	1 cut(s)	331
BssMI	GATC	2 cut(s)	21, 255
Bst4CI	ACNGT	1 cut(s)	199
BstC8I	GCNNGC	4 cut(s)	106, 133, 264, 280
BstDEI	CTNAG	3 cut(s)	140, 252, 284
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	2 cut(s)	24, 258
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	2 cut(s)	21, 255
BstV1I	GCAGC	1 cut(s)	331
BsuRI	GGCC	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	4 cut(s)	106, 133, 264, 280
CciI	TCATGA	1 cut(s)	294
CviAII	CATG	4 cut(s)	219, 226, 259, 295
CviJI	RGCY	5 cut(s)	34, 86, 135, 152, 282
CviKI_1	RGCY	5 cut(s)	34, 86, 135, 152, 282
DdeI	CTNAG	3 cut(s)	140, 252, 284
DpnI	GATC	2 cut(s)	23, 257
DpnII	GATC	2 cut(s)	21, 255
FaeI	CATG	4 cut(s)	222, 229, 262, 298
FaiI	YATR	5 cut(s)	159, 220, 227, 260, 296
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	4 cut(s)	218, 225, 258, 294
FauI	CCCGC	1 cut(s)	259
Fnu4HI	GCNGC	2 cut(s)	207, 345
FokI	GGATG	1 cut(s)	162
Fsp4HI	GCNGC	2 cut(s)	207, 345
GluI	GCNGC	2 cut(s)	207, 345
HaeIII	GGCC	1 cut(s)	282
Hin1II	CATG	4 cut(s)	222, 229, 262, 298
HinfI	GANTC	1 cut(s)	187
Hpy188I	TCNGA	1 cut(s)	186
Hpy188III	TCNNGA	3 cut(s)	19, 70, 295
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	4 cut(s)	4, 104, 323, 347
HpyF3I	CTNAG	3 cut(s)	140, 252, 284
Hsp92II	CATG	4 cut(s)	222, 229, 262, 298
Kzo9I	GATC	2 cut(s)	21, 255
LmnI	GCTCC	1 cut(s)	78
LpnPI	CCDG	9 cut(s)	26, 55, 90, 117, 192, 264, 276, 285, 312
Lsp1109I	GCAGC	1 cut(s)	331
MalI	GATC	2 cut(s)	23, 257
MboI	GATC	2 cut(s)	21, 255
MboII	GAAGA	3 cut(s)	175, 178, 182
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	1 cut(s)	318
MnlI	CCTC	3 cut(s)	44, 92, 293
MslI	CAYNNNNRTG	1 cut(s)	217
MspA1I	CMGCKG	1 cut(s)	266
NdeII	GATC	2 cut(s)	21, 255
NlaIII	CATG	4 cut(s)	222, 229, 262, 298
PagI	TCATGA	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	187
PkrI	GCNGC	2 cut(s)	208, 346
RseI	CAYNNNNRTG	1 cut(s)	217
SatI	GCNGC	2 cut(s)	207, 345
Sau3AI	GATC	2 cut(s)	21, 255
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	2 cut(s)	88, 103
SmiMI	CAYNNNNRTG	1 cut(s)	217
Sse9I	AATT	1 cut(s)	318
SsiI	CCGC	2 cut(s)	207, 266
TaaI	ACNGT	1 cut(s)	199
TasI	AATT	1 cut(s)	318
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	187
TscAI	CASTG	1 cut(s)	292
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.