MD11G1221000.v1.1

UPF0136 membrane protein At2g26240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0014470
Physical Location & Seq
Forward (+)
32399323 .. 32402209
2887 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1221000.v1.1.491

Sequence Viewer

Length: 360 bp
ATGCACGATTTTTGCTTCACGATCCCTTACGGGTTGGTGCTGATTGGCGGAGGAGTTTTTGGATATTTCAAGAAGGGGAGCACGGCTTCTTTGGCTGGGGGCGCGGGCATCGGATTGCTCCTCACTCTTGCTGGATATATCAGTCTCAAAGCCTTCGAGAAGAAGAAGAACTCGTATCCTGCTTTGATTCTCGAAACGGTTTGTGCTGCCCTACTTACGTGGGTCATGGGACAGCGCTATCTGCATACTTTTAAGATCATGCCAGCTGGTGTTGTTGCCGGTATCAGCGTTGTCATGACTGGATTTTATGTGTACAAAATTGCAACGGGTGGAAACCATATTCCGGCCAAGACCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tmemb_14

Protein Analysis

120

Amino Acids

12.62

Weight (kDa)

9.66

Isoelectric Point (pI)

20.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_14 PF03647 6 - 103 3.1e-25 Transmembrane proteins 14C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20510
fragaria_vesca FvH4_3g22450
malus_domestica MD03G1204200.v1.1 MD11G1221000.v1.1
prunus_persica Prupe.4G211200_v2.0.a1
pyrus_communis pycom03g15480
rosa_chinensis RchiOBHm_Chr5g0039111
rosa_multiflora Rmu_sc0000533.1_g000028 Rmu_ssc0000410.1_g000002
rosa_roxburghii Rroxscaffold_1G00041990
rosa_rugosa Rorug05G0176500
rosa_samantha Rh5AG263000 Rh5BG267800 Rh5CG300500 Rh5DG274400
rosa_wichuraiana Rw0G008280 Rw5G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 104
AciI CCGC 2 cut(s) 48, 104
AclWI GGATC 1 cut(s) 16
AcoI YGGCCR 1 cut(s) 345
AfaI GTAC 1 cut(s) 314
AfeI AGCGCT 1 cut(s) 236
AfiI CCNNNNNNNGG 1 cut(s) 343
AgsI TTSAA 1 cut(s) 70
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 1 cut(s) 16
Aor51HI AGCGCT 1 cut(s) 236
AoxI GGCC 1 cut(s) 345
ApeKI GCWGC 1 cut(s) 206
AspLEI GCGC 2 cut(s) 104, 237
Bbv12I GWGCWC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 193
BceAI ACGGC 1 cut(s) 99
BciVI GTATCC 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 149
BfoI RGCGCY 1 cut(s) 238
BfuI GTATCC 1 cut(s) 186
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
BmsI GCATC 1 cut(s) 117
BsaAI YACGTR 1 cut(s) 219
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 343
BseNI ACTGG 1 cut(s) 304
BseRI GAGGAG 2 cut(s) 66, 110
BseXI GCAGC 1 cut(s) 193
BseYI CCCAGC 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 83
BsiSI CCGG 2 cut(s) 279, 344
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 1 cut(s) 343
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 243
BsnI GGCC 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 83
Bsp1407I TGTACA 1 cut(s) 312
Bsp143I GATC 2 cut(s) 21, 255
BspACI CCGC 2 cut(s) 48, 104
BspANI GGCC 1 cut(s) 347
BspFNI CGCG 1 cut(s) 104
BspHI TCATGA 1 cut(s) 294
BspPI GGATC 1 cut(s) 16
BsrFI RCCGGY 1 cut(s) 278
BsrGI TGTACA 1 cut(s) 312
BsrI ACTGG 1 cut(s) 304
BssAI RCCGGY 1 cut(s) 278
BssMI GATC 2 cut(s) 21, 255
Bst4CI ACNGT 1 cut(s) 199
BstAUI TGTACA 1 cut(s) 312
BstBAI YACGTR 1 cut(s) 219
BstC8I GCNNGC 2 cut(s) 106, 264
BstFNI CGCG 1 cut(s) 104
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 2 cut(s) 104, 237
BstKTI GATC 2 cut(s) 24, 258
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 2 cut(s) 21, 255
BstMWI GCNNNNNNNGC 3 cut(s) 92, 101, 241
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 193
BsuI GTATCC 1 cut(s) 186
BsuRI GGCC 1 cut(s) 347
Cac8I GCNNGC 2 cut(s) 106, 264
CciI TCATGA 1 cut(s) 294
CfoI GCGC 2 cut(s) 104, 237
Cfr10I RCCGGY 1 cut(s) 278
Csp6I GTAC 1 cut(s) 313
CviAII CATG 3 cut(s) 226, 259, 295
CviJI RGCY 5 cut(s) 86, 95, 152, 266, 347
CviKI_1 RGCY 5 cut(s) 86, 95, 152, 266, 347
CviQI GTAC 1 cut(s) 313
DpnI GATC 2 cut(s) 23, 257
DpnII GATC 2 cut(s) 21, 255
EaeI YGGCCR 1 cut(s) 345
EciI GGCGGA 1 cut(s) 63
Eco47III AGCGCT 1 cut(s) 236
FaeI CATG 3 cut(s) 229, 262, 298
FaiI YATR 7 cut(s) 138, 227, 246, 260, 296, 309, 339
FaqI GGGAC 1 cut(s) 243
FatI CATG 3 cut(s) 225, 258, 294
FauI CCCGC 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 207
GlaI GCGC 2 cut(s) 103, 236
GluI GCNGC 1 cut(s) 207
GsaI CCCAGC 1 cut(s) 99
HaeII RGCGCY 1 cut(s) 238
HaeIII GGCC 1 cut(s) 347
HapII CCGG 2 cut(s) 279, 344
HhaI GCGC 2 cut(s) 104, 237
Hin1II CATG 3 cut(s) 229, 262, 298
Hin6I GCGC 2 cut(s) 102, 235
HinP1I GCGC 2 cut(s) 102, 235
HinfI GANTC 1 cut(s) 187
HpaII CCGG 2 cut(s) 279, 344
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 1 cut(s) 113
Hpy188III TCNNGA 5 cut(s) 19, 70, 157, 191, 295
Hpy8I GTNNAC 1 cut(s) 313
HpyAV CCTTC 2 cut(s) 67, 163
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 3 cut(s) 4, 244, 323
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 101, 241
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 3 cut(s) 229, 262, 298
HspAI GCGC 2 cut(s) 102, 235
Kzo9I GATC 2 cut(s) 21, 255
LmnI GCTCC 2 cut(s) 78, 123
LpnPI CCDG 7 cut(s) 81, 117, 192, 252, 276, 285, 292
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 1 cut(s) 117
MaeII ACGT 1 cut(s) 218
MalI GATC 2 cut(s) 23, 257
MboI GATC 2 cut(s) 21, 255
MboII GAAGA 3 cut(s) 172, 175, 178
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 1 cut(s) 318
MnlI CCTC 2 cut(s) 44, 131
MseI TTAA 1 cut(s) 252
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 2 cut(s) 279, 344
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 3 cut(s) 92, 101, 241
NdeII GATC 2 cut(s) 21, 255
NlaIII CATG 3 cut(s) 229, 262, 298
PagI TCATGA 1 cut(s) 294
PfeI GAWTC 1 cut(s) 187
PkrI GCNGC 1 cut(s) 208
Ppu21I YACGTR 1 cut(s) 219
PspFI CCCAGC 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 2 cut(s) 21, 255
SduI GDGCHC 1 cut(s) 83
SetI ASST 2 cut(s) 221, 268
SfaNI GCATC 1 cut(s) 117
Sse9I AATT 1 cut(s) 318
SsiI CCGC 2 cut(s) 48, 104
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 221
TaqI TCGA 2 cut(s) 156, 192
TasI AATT 1 cut(s) 318
TatI WGTACW 1 cut(s) 312
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TseI GCWGC 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.