FvH4_3g22450

UPF0136 membrane protein At2g26240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014470
Physical Location & Seq
Reverse (-)
15490752 .. 15493039
2288 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22450.t1

Sequence Viewer

Length: 360 bp
ATGCACGATTTCTGCTTCACGATCCCGTACGGGCTGTTGCTGTTGGGTGGAGGAGTTTTTGGGTATTTGAGGAAGGGGAGCACTGCTTCTCTGTATGGAGGTGCAGGCATTGGATTGCTCCTCACTCTTGCTGGCTATTTCAGCCTCCAAGCCTTTCAGAAGAAGAAGAACTCGTACCCTGCTCTGATTCTTGAAACAGTTTGCGCCACCGCACTAACATGGGTTATGGGACAAAGATACTTGCAAACTTCTAAGATCATGCCTGCTGGTGTTGTCGCTGGCATCAGCGCTCTCATGATGGGATTCTATCTCTACAAAATTGCAACTGGTGGCAACCATATTGCTGCGAAGACCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tmemb_14

Protein Analysis

120

Amino Acids

12.68

Weight (kDa)

9.7

Isoelectric Point (pI)

29.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_14 PF03647 6 - 103 1.4e-25 Transmembrane proteins 14C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014470)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20510
fragaria_vesca FvH4_3g22450
malus_domestica MD03G1204200.v1.1 MD11G1221000.v1.1
prunus_persica Prupe.4G211200_v2.0.a1
pyrus_communis pycom03g15480
rosa_chinensis RchiOBHm_Chr5g0039111
rosa_multiflora Rmu_sc0000533.1_g000028 Rmu_ssc0000410.1_g000002
rosa_roxburghii Rroxscaffold_1G00041990
rosa_rugosa Rorug05G0176500
rosa_samantha Rh5AG263000 Rh5BG267800 Rh5CG300500 Rh5DG274400
rosa_wichuraiana Rw0G008280 Rw5G024590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 210
AclWI GGATC 1 cut(s) 16
AfaI GTAC 2 cut(s) 29, 176
AfeI AGCGCT 1 cut(s) 289
AgsI TTSAA 1 cut(s) 194
Alw21I GWGCWC 1 cut(s) 83
AlwI GGATC 1 cut(s) 16
Aor51HI AGCGCT 1 cut(s) 289
ApeKI GCWGC 1 cut(s) 344
AspLEI GCGC 2 cut(s) 206, 290
BarI GAAGNNNNNNTAC 2 cut(s) 158, 190
BbsI GAAGAC 1 cut(s) 356
Bbv12I GWGCWC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 331
BccI CCATC 1 cut(s) 292
BfoI RGCGCY 1 cut(s) 291
BisI GCNGC 1 cut(s) 345
BlsI GCNGC 1 cut(s) 346
BmsI GCATC 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 356
Bse1I ACTGG 1 cut(s) 331
BseNI ACTGG 1 cut(s) 331
BseRI GAGGAG 2 cut(s) 66, 110
BseXI GCAGC 1 cut(s) 331
BsgI GTGCAG 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 83
BsiWI CGTACG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 243
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 2 cut(s) 21, 255
BspACI CCGC 1 cut(s) 210
BspHI TCATGA 1 cut(s) 294
BspPI GGATC 1 cut(s) 16
BsrI ACTGG 1 cut(s) 331
BssMI GATC 2 cut(s) 21, 255
Bst4CI ACNGT 1 cut(s) 199
BstC8I GCNNGC 4 cut(s) 106, 133, 264, 280
BstDEI CTNAG 1 cut(s) 252
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 2 cut(s) 206, 290
BstKTI GATC 2 cut(s) 24, 258
BstMBI GATC 2 cut(s) 21, 255
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 331
BstV2I GAAGAC 1 cut(s) 356
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 4 cut(s) 106, 133, 264, 280
CciI TCATGA 1 cut(s) 294
CfoI GCGC 2 cut(s) 206, 290
Csp6I GTAC 2 cut(s) 28, 175
CviAII CATG 3 cut(s) 219, 259, 295
CviJI RGCY 4 cut(s) 34, 135, 144, 152
CviKI_1 RGCY 4 cut(s) 34, 135, 144, 152
CviQI GTAC 2 cut(s) 28, 175
DdeI CTNAG 1 cut(s) 252
DpnI GATC 2 cut(s) 23, 257
DpnII GATC 2 cut(s) 21, 255
Eco47III AGCGCT 1 cut(s) 289
FaeI CATG 3 cut(s) 222, 262, 298
FaiI YATR 6 cut(s) 96, 220, 227, 260, 296, 339
FaqI GGGAC 1 cut(s) 243
FatI CATG 3 cut(s) 218, 258, 294
Fnu4HI GCNGC 1 cut(s) 345
Fsp4HI GCNGC 1 cut(s) 345
GlaI GCGC 2 cut(s) 205, 289
GluI GCNGC 1 cut(s) 345
HaeII RGCGCY 1 cut(s) 291
HhaI GCGC 2 cut(s) 206, 290
Hin1II CATG 3 cut(s) 222, 262, 298
Hin6I GCGC 2 cut(s) 204, 288
HinP1I GCGC 2 cut(s) 204, 288
HinfI GANTC 2 cut(s) 187, 303
Hpy188I TCNGA 2 cut(s) 159, 186
Hpy188III TCNNGA 3 cut(s) 19, 191, 295
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 4 cut(s) 4, 104, 244, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
HpyF3I CTNAG 1 cut(s) 252
Hsp92II CATG 3 cut(s) 222, 262, 298
HspAI GCGC 2 cut(s) 204, 288
Kzo9I GATC 2 cut(s) 21, 255
LmnI GCTCC 2 cut(s) 78, 123
LpnPI CCDG 7 cut(s) 90, 117, 192, 252, 264, 276, 312
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 1 cut(s) 291
MalI GATC 2 cut(s) 23, 257
MboI GATC 2 cut(s) 21, 255
MboII GAAGA 3 cut(s) 172, 175, 178
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 1 cut(s) 318
MnlI CCTC 5 cut(s) 44, 63, 92, 131, 155
MslI CAYNNNNRTG 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 141
NdeII GATC 2 cut(s) 21, 255
NlaIII CATG 3 cut(s) 222, 262, 298
PagI TCATGA 1 cut(s) 294
PfeI GAWTC 2 cut(s) 187, 303
Pfl23II CGTACG 1 cut(s) 27
PkrI GCNGC 1 cut(s) 346
PspLI CGTACG 1 cut(s) 27
RsaI GTAC 2 cut(s) 29, 176
RsaNI GTAC 2 cut(s) 28, 175
RseI CAYNNNNRTG 1 cut(s) 217
SatI GCNGC 1 cut(s) 345
Sau3AI GATC 2 cut(s) 21, 255
SduI GDGCHC 1 cut(s) 83
SetI ASST 1 cut(s) 103
SfaNI GCATC 1 cut(s) 291
SmiMI CAYNNNNRTG 1 cut(s) 217
Sse9I AATT 1 cut(s) 318
SsiI CCGC 1 cut(s) 210
TaaI ACNGT 1 cut(s) 199
TasI AATT 1 cut(s) 318
TfiI GAWTC 2 cut(s) 187, 303
TscAI CASTG 1 cut(s) 88
TseI GCWGC 1 cut(s) 344
TspRI CASTG 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.