Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016480

Physical Location & Seq

Genomic Coordinates Forward (+)

7166027 .. 7168060

Gene Structure 2034 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGAAAATCAATTGCTTGTTCTGTTGTATGTCCCACAGACGATTTAACAGACGATCATCATCGAGACAAAGCATCAAAGACTGCATTGATGCAAAGAACAATATAACTACATTTGACAACATCTCTTTTAAAACAGATAGCAGTAGGCGAAGATACATATCCGAGGAGATAGCAAAACTCGGTAAAGGGAACATCAGTGCTCATATTTTTACATTCAGAGAGCTTTGCGTCGCTACCAAGAACTTCAACCCCGATAATCAGCTCGGTGAAGGCGGGTTTGGAAGGGTTTACAAAGGGCAGATAGAAACCCCGGAACAAGTTGTTGCGGTTAAGCAGCTAGACAGGAATGGTTACCAAGGGAACAGAGAGTTTCTTGTGGAAGTCATGATGTTGAGTCTCTTACATCATCAAAACCTTGTCAATTTGGTCGGATATTGCGCAGACGGTGATCAACGGATTCTTGTCTATGAATACATGCAAAATGGCTCTTTAGAGGATCATCTTCTAGAATTGGCGCGGAACAAGAAGAAGCCGTTGGATTGGGACACAAGAATGAAAGTTGCGGCAGGAGCAGCTAGAGGGCTTGAGTATCTACACGAAACAGCAGATCCTCCTGTTATCTACAGAGACTTCAAGGCCTCAAATATATTACTTGACGAAGAATTCAACCCAAAGCTTTCGGATTTCGGTTTAGCTAAGGTTGGTCCGACCGGTGGAGAGACTCATGTGTCAACGAGAGTGATGGGAACATACGGCTATTGTGCGCCTGAGTATGCTCTCACAGGACAGCTCACTGTGAAATCCGATGTATACAGCTTCGGAGTCGTGTTCTTGGAGATGATCACAGGAAGACGAGTCATTGACACAACAAAACCAACTGAAGAACAGAACTTAGTCACTTGGGCGAGTCCATTGTTCAAAGATAGGAGAAAGTTCACGTTAATGGCAGATCCATTGCTTGAAGGAAAGTATCCAATAAAAGGATTGTATCAAGCGCTTGCAGTAGCAGCAATGTGTCTTCAAGAAGAAGCAGCAACGAGACCAATGATGAGTGATGTAGTCACTGCGCTTGAGTACTTAGCCGTGACCAAAACCGAAGAAGATGGACAAACTGTAGAAGGAGAAGAAGAAGAAGAAGAAGACGAAAGATCCAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042579 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

386

Amino Acids

43.64

Weight (kDa)

5.58

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	84 - 301	9e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	85 - 294	2.2e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20530 AT3G20530
fragaria_vesca	FvH4_3g22260
malus_domestica	MD03G1206400.v1.1 MD11G1221800.v1.1
prunus_persica	Prupe.4G209600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0038331
rosa_laevigata	RLG00000033847
rosa_multiflora	Rmu_sc0003632.1_g000006
rosa_rugosa	Rorug05G0172000
rosa_samantha	Rh5AG259400 Rh5CG295500 Rh5DG272200
rosa_wichuraiana	Rw5G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	727
Acc16I	TGCGCA	1 cut(s)	439
AccI	GTMKAC	1 cut(s)	810
AccII	CGCG	1 cut(s)	517
AciI	CCGC	4 cut(s)	273, 326, 517, 563
AclWI	GGATC	4 cut(s)	504, 602, 944, 1143
AcsI	RAATTY	1 cut(s)	662
AcuI	CTGAAG	1 cut(s)	900
AfaI	GTAC	1 cut(s)	1076
AfeI	AGCGCT	1 cut(s)	996
AfiI	CCNNNNNNNGG	2 cut(s)	713, 980
AgeI	ACCGGT	1 cut(s)	710
AgsI	TTSAA	6 cut(s)	247, 634, 667, 919, 962, 1022
AjuI	GAANNNNNNNTTGG	4 cut(s)	261, 293, 518, 550
AluBI	AGCT	8 cut(s)	223, 262, 337, 575, 676, 695, 790, 816
AluI	AGCT	8 cut(s)	223, 262, 337, 575, 676, 695, 790, 816
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	5 cut(s)	58, 401, 621, 713, 1033
AlwI	GGATC	4 cut(s)	504, 602, 944, 1143
Aor51HI	AGCGCT	1 cut(s)	996
AoxI	GGCC	1 cut(s)	636
ApeKI	GCWGC	4 cut(s)	334, 572, 1007, 1031
ApoI	RAATTY	1 cut(s)	662
AsiGI	ACCGGT	1 cut(s)	710
AspLEI	GCGC	5 cut(s)	440, 517, 766, 997, 1069
AspS9I	GGNCC	1 cut(s)	704
AsuC2I	CCSGG	1 cut(s)	311
AsuHPI	GGTGA	2 cut(s)	278, 458
AvaII	GGWCC	1 cut(s)	704
BbsI	GAAGAC	3 cut(s)	856, 1010, 1146
Bbv12I	GWGCWC	1 cut(s)	202
BbvI	GCAGC	4 cut(s)	346, 584, 1019, 1043
BccI	CCATC	2 cut(s)	736, 1097
BceAI	ACGGC	3 cut(s)	517, 769, 1067
BciVI	GTATCC	1 cut(s)	981
BclI	TGATCA	2 cut(s)	448, 840
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	5 cut(s)	58, 401, 621, 713, 1033
BfaI	CTAG	3 cut(s)	338, 506, 576
BfmI	CTRYAG	2 cut(s)	622, 1113
BfoI	RGCGCY	1 cut(s)	998
BfuI	GTATCC	1 cut(s)	981
BisI	GCNGC	5 cut(s)	335, 564, 573, 1008, 1032
BlsI	GCNGC	5 cut(s)	336, 565, 574, 1009, 1033
BmcAI	AGTACT	1 cut(s)	1076
Bme1390I	CCNGG	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	704
BmgT120I	GGNCC	1 cut(s)	704
BmrFI	CCNGG	1 cut(s)	311
BmsI	GCATC	2 cut(s)	79, 81
BpiI	GAAGAC	3 cut(s)	856, 1010, 1146
Bpu10I	CCTNAGC	1 cut(s)	696
BpuEI	CTTGAG	2 cut(s)	605, 1091
BpuMI	CCSGG	1 cut(s)	311
BsaBI	GATNNNNATC	2 cut(s)	58, 157
BsaI	GGTCTC	1 cut(s)	1033
BsaJI	CCNNGG	3 cut(s)	162, 309, 355
BsaWI	WCCGGW	1 cut(s)	710
Bsc4I	CCNNNNNNNGG	2 cut(s)	713, 980
Bse118I	RCCGGY	1 cut(s)	710
Bse3DI	GCAATG	2 cut(s)	953, 1017
Bse8I	GATNNNNATC	2 cut(s)	58, 157
BseDI	CCNNGG	3 cut(s)	162, 309, 355
BseJI	GATNNNNATC	2 cut(s)	58, 157
BseLI	CCNNNNNNNGG	2 cut(s)	713, 980
BseMI	GCAATG	2 cut(s)	953, 1017
BseMII	CTCAG	1 cut(s)	759
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	4 cut(s)	346, 584, 1019, 1043
Bsh1236I	CGCG	1 cut(s)	517
Bsh1285I	CGRYCG	1 cut(s)	711
BshFI	GGCC	1 cut(s)	638
BshTI	ACCGGT	1 cut(s)	710
BsiEI	CGRYCG	1 cut(s)	711
BsiHKAI	GWGCWC	1 cut(s)	202
BsiSI	CCGG	2 cut(s)	311, 711
BslFI	GGGAC	2 cut(s)	16, 557
BslI	CCNNNNNNNGG	2 cut(s)	713, 980
BsmAI	GTCTC	5 cut(s)	58, 401, 621, 713, 1033
BsmFI	GGGAC	2 cut(s)	16, 557
BsnI	GGCC	1 cut(s)	638
Bso31I	GGTCTC	1 cut(s)	1033
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	7 cut(s)	53, 448, 496, 607, 840, 949, 1148
BspACI	CCGC	4 cut(s)	273, 326, 517, 563
BspANI	GGCC	1 cut(s)	638
BspCNI	CTCAG	1 cut(s)	760
BspFNI	CGCG	1 cut(s)	517
BspHI	TCATGA	1 cut(s)	384
BspPI	GGATC	4 cut(s)	504, 602, 944, 1143
BspTNI	GGTCTC	1 cut(s)	1033
BsrDI	GCAATG	2 cut(s)	953, 1017
BsrFI	RCCGGY	1 cut(s)	710
BssAI	RCCGGY	1 cut(s)	710
BssECI	CCNNGG	3 cut(s)	162, 309, 355
BssMI	GATC	7 cut(s)	53, 448, 496, 607, 840, 949, 1148
BssNAI	GTATAC	1 cut(s)	811
BssT1I	CCWWGG	1 cut(s)	355
Bst1107I	GTATAC	1 cut(s)	811
Bst4CI	ACNGT	3 cut(s)	446, 796, 1114
BstC8I	GCNNGC	1 cut(s)	999
BstDEI	CTNAG	4 cut(s)	696, 768, 892, 1078
BstEII	GGTNACC	1 cut(s)	350
BstFNI	CGCG	1 cut(s)	517
BstH2I	RGCGCY	1 cut(s)	998
BstHHI	GCGC	5 cut(s)	440, 517, 766, 997, 1069
BstKTI	GATC	7 cut(s)	56, 451, 499, 610, 843, 952, 1151
BstMAI	GTCTC	5 cut(s)	58, 401, 621, 713, 1033
BstMBI	GATC	7 cut(s)	53, 448, 496, 607, 840, 949, 1148
BstMCI	CGRYCG	1 cut(s)	711
BstMWI	GCNNNNNNNGC	3 cut(s)	569, 572, 1007
BstNSI	RCATGY	1 cut(s)	478
BstPI	GGTNACC	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	309
BstSFI	CTRYAG	2 cut(s)	622, 1113
BstUI	CGCG	1 cut(s)	517
BstV1I	GCAGC	4 cut(s)	346, 584, 1019, 1043
BstV2I	GAAGAC	3 cut(s)	856, 1010, 1146
BstX2I	RGATCY	3 cut(s)	607, 949, 1148
BstYI	RGATCY	3 cut(s)	607, 949, 1148
BstZ17I	GTATAC	1 cut(s)	811
BsuI	GTATCC	1 cut(s)	981
BsuRI	GGCC	1 cut(s)	638
BtsI	GCAGTG	1 cut(s)	1062
BtsIMutI	CAGTG	3 cut(s)	202, 792, 1062
Cac8I	GCNNGC	1 cut(s)	999
CciI	TCATGA	1 cut(s)	384
CfoI	GCGC	5 cut(s)	440, 517, 766, 997, 1069
Cfr10I	RCCGGY	1 cut(s)	710
Cfr13I	GGNCC	1 cut(s)	704
CseI	GACGC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	1075
CspAI	ACCGGT	1 cut(s)	710
CviAII	CATG	3 cut(s)	385, 475, 725
CviQI	GTAC	1 cut(s)	1075
DdeI	CTNAG	4 cut(s)	696, 768, 892, 1078
DpnI	GATC	7 cut(s)	55, 450, 498, 609, 842, 951, 1150
DpnII	GATC	7 cut(s)	53, 448, 496, 607, 840, 949, 1148
DraI	TTTAAA	1 cut(s)	130
DrdI	GACNNNNNNGTC	1 cut(s)	727
DseDI	GACNNNNNNGTC	1 cut(s)	727
Eco130I	CCWWGG	1 cut(s)	355
Eco147I	AGGCCT	1 cut(s)	638
Eco31I	GGTCTC	1 cut(s)	1033
Eco47I	GGWCC	1 cut(s)	704
Eco47III	AGCGCT	1 cut(s)	996
Eco57I	CTGAAG	1 cut(s)	900
Eco91I	GGTNACC	1 cut(s)	350
EcoO65I	GGTNACC	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	662
EcoT14I	CCWWGG	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	3 cut(s)	388, 478, 728
FaqI	GGGAC	2 cut(s)	16, 557
FatI	CATG	3 cut(s)	384, 474, 724
FauI	CCCGC	1 cut(s)	266
FbaI	TGATCA	2 cut(s)	448, 840
FblI	GTMKAC	1 cut(s)	810
Fnu4HI	GCNGC	5 cut(s)	335, 564, 573, 1008, 1032
Fsp4HI	GCNGC	5 cut(s)	335, 564, 573, 1008, 1032
FspBI	CTAG	3 cut(s)	338, 506, 576
FspI	TGCGCA	1 cut(s)	439
GlaI	GCGC	5 cut(s)	439, 516, 765, 996, 1068
GluI	GCNGC	5 cut(s)	335, 564, 573, 1008, 1032
HaeII	RGCGCY	1 cut(s)	998
HaeIII	GGCC	1 cut(s)	638
HapII	CCGG	2 cut(s)	311, 711
HgaI	GACGC	1 cut(s)	217
HhaI	GCGC	5 cut(s)	440, 517, 766, 997, 1069
Hin1II	CATG	3 cut(s)	388, 478, 728
Hin6I	GCGC	5 cut(s)	438, 515, 764, 995, 1067
HinP1I	GCGC	5 cut(s)	438, 515, 764, 995, 1067
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HindIII	AAGCTT	1 cut(s)	674
HinfI	GANTC	6 cut(s)	394, 457, 721, 822, 855, 907
HpaII	CCGG	2 cut(s)	311, 711
HphI	GGTGA	2 cut(s)	278, 458
Hpy166II	GTNNAC	4 cut(s)	289, 732, 811, 936
Hpy188I	TCNGA	7 cut(s)	163, 218, 431, 682, 708, 805, 821
Hpy188III	TCNNGA	4 cut(s)	63, 385, 506, 1022
Hpy8I	GTNNAC	4 cut(s)	289, 732, 811, 936
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	4 cut(s)	263, 276, 956, 1112
HpyCH4III	ACNGT	3 cut(s)	446, 796, 1114
HpyCH4IV	ACGT	1 cut(s)	938
HpyCH4V	TGCA	4 cut(s)	84, 92, 478, 1001
HpyF10VI	GCNNNNNNNGC	3 cut(s)	569, 572, 1007
HpyF3I	CTNAG	4 cut(s)	696, 768, 892, 1078
HpySE526I	ACGT	1 cut(s)	938
Hsp92II	CATG	3 cut(s)	388, 478, 728
HspAI	GCGC	5 cut(s)	438, 515, 764, 995, 1067
Ksp22I	TGATCA	2 cut(s)	448, 840
Kzo9I	GATC	7 cut(s)	53, 448, 496, 607, 840, 949, 1148
LmnI	GCTCC	1 cut(s)	569
LpnPI	CCDG	8 cut(s)	324, 328, 552, 627, 724, 768, 780, 831
Lsp1109I	GCAGC	4 cut(s)	346, 584, 1019, 1043
LweI	GCATC	2 cut(s)	79, 81
MaeI	CTAG	3 cut(s)	338, 506, 576
MaeII	ACGT	1 cut(s)	938
MaeIII	GTNAC	4 cut(s)	350, 895, 1060, 1084
MalI	GATC	7 cut(s)	55, 450, 498, 609, 842, 951, 1150
MboI	GATC	7 cut(s)	53, 448, 496, 607, 840, 949, 1148
MfeI	CAATTG	1 cut(s)	10
MflI	RGATCY	3 cut(s)	607, 949, 1148
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	4 cut(s)	10, 421, 509, 662
MlyI	GAGTC	5 cut(s)	403, 715, 831, 864, 916
MmeI	TCCRAC	3 cut(s)	409, 516, 731
MnlI	CCTC	5 cut(s)	157, 487, 572, 621, 649
MseI	TTAA	4 cut(s)	45, 129, 330, 941
MslI	CAYNNNNRTG	2 cut(s)	551, 941
MspI	CCGG	2 cut(s)	311, 711
MspR9I	CCNGG	1 cut(s)	311
MunI	CAATTG	1 cut(s)	10
MvnI	CGCG	1 cut(s)	517
MwoI	GCNNNNNNNGC	3 cut(s)	569, 572, 1007
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	7 cut(s)	53, 448, 496, 607, 840, 949, 1148
NlaIII	CATG	3 cut(s)	388, 478, 728
NmuCI	GTSAC	3 cut(s)	895, 1060, 1084
NsbI	TGCGCA	1 cut(s)	439
NspI	RCATGY	1 cut(s)	478
PagI	TCATGA	1 cut(s)	384
PceI	AGGCCT	1 cut(s)	638
PfeI	GAWTC	1 cut(s)	457
PinAI	ACCGGT	1 cut(s)	710
PkrI	GCNGC	5 cut(s)	336, 565, 574, 1009, 1033
PleI	GAGTC	5 cut(s)	402, 715, 830, 863, 915
PpsI	GAGTC	5 cut(s)	402, 715, 830, 863, 915
PspEI	GGTNACC	1 cut(s)	350
PspPI	GGNCC	1 cut(s)	704
PsuI	RGATCY	3 cut(s)	607, 949, 1148
RsaI	GTAC	1 cut(s)	1076
RsaNI	GTAC	1 cut(s)	1075
RseI	CAYNNNNRTG	2 cut(s)	551, 941
SaqAI	TTAA	4 cut(s)	45, 129, 330, 941
SatI	GCNGC	5 cut(s)	335, 564, 573, 1008, 1032
Sau3AI	GATC	7 cut(s)	53, 448, 496, 607, 840, 949, 1148
Sau96I	GGNCC	1 cut(s)	704
ScaI	AGTACT	1 cut(s)	1076
SchI	GAGTC	5 cut(s)	403, 715, 831, 864, 916
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	1 cut(s)	202
SfaNI	GCATC	2 cut(s)	79, 81
SfcI	CTRYAG	2 cut(s)	622, 1113
SinI	GGWCC	1 cut(s)	704
SmiMI	CAYNNNNRTG	2 cut(s)	551, 941
SmlI	CTYRAG	2 cut(s)	584, 1070
SmoI	CTYRAG	2 cut(s)	584, 1070
Sse9I	AATT	4 cut(s)	10, 421, 509, 662
SseBI	AGGCCT	1 cut(s)	638
SsiI	CCGC	4 cut(s)	273, 326, 517, 563
SspMI	CTAG	3 cut(s)	338, 506, 576
StuI	AGGCCT	1 cut(s)	638
StyD4I	CCNGG	1 cut(s)	309
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	3 cut(s)	446, 796, 1114
TaiI	ACGT	1 cut(s)	941
TaqI	TCGA	1 cut(s)	62
TasI	AATT	4 cut(s)	10, 421, 509, 662
TatI	WGTACW	1 cut(s)	1074
TauI	GCSGC	1 cut(s)	566
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	4 cut(s)	45, 129, 330, 941
Tru9I	TTAA	4 cut(s)	45, 129, 330, 941
TscAI	CASTG	3 cut(s)	202, 799, 1069
TseFI	GTSAC	3 cut(s)	895, 1060, 1084
TseI	GCWGC	4 cut(s)	334, 572, 1007, 1031
Tsp45I	GTSAC	3 cut(s)	895, 1060, 1084
TspDTI	ATGAA	3 cut(s)	17, 483, 569
TspGWI	ACGGA	1 cut(s)	469
TspRI	CASTG	3 cut(s)	202, 799, 1069
VpaK11BI	GGWCC	1 cut(s)	704
XapI	RAATTY	1 cut(s)	662
XbaI	TCTAGA	1 cut(s)	505
XceI	RCATGY	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	810
XspI	CTAG	3 cut(s)	338, 506, 576
ZrmI	AGTACT	1 cut(s)	1076

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.