Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0016480

Physical Location & Seq

Genomic Coordinates Reverse (-)

32936718 .. 32938688

Gene Structure 1971 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033847

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGATGAGCTGTTTCCGATGTTGCATGTCTGAAGAGAAAATCGCTAGGAAGTCATTGAAAAAGAGCATAAAGGAATACCACGACACAAAAACCTTGAACTCATTTGCTAACATCTCCTTCAAAACTGTAGCTAGTTCAATTCTGCTGGCCTCCAATAAGTTTTTGATTGTTAACCTTGAACATATTTACACTGTAGATAGCAGCAGGAGAAAGTATATTACCGATGAAATAGCAAAGATTGGCAAAGGAAATATTTCTGCTCGGATTTTTACTTACCGTGAACTATGTGTTGCAACTCAAAATTTTCATCCTGAATATTTGCTTGGCGAAGGTGGTTTTGGAAGAGTTTACAAAGGCCACCTTGAATGCACAAACCAAGTTGTTGCTGTTAAGCAATTAGACAGGAATGGATTCCAAGGAAATAGAGAATTTCTTGTAGAAGTTTTGATCTTGAGCCTTCTTCATGCTCCTAACCTTGTCAATTTGGTGGGATATTGCGCCGATGGTGATCAAAGAATTTTGGTGTATGAGTACATGGCCAATGGATCCCTAGAAGATCATCTTCTTGATTTACCTCCAAGCAAAAAACCCTTGGATTGGGAAACTAGGATCAAAATAGCTACTGGAGCAGCAAAAGGACTTGAATATCTACATGAACAAGCAAATCCCCCTGTCATATACCGCGATTTCAAAGCTTCCAACATACTGTTAGATGAAAACTTCAATCCGAAACTCTCTGATTTTGGTCTAGCAAAGCTTGGTCCAACTGGGGATAAGAGTCATGTGTCGACCAGGGTTATGGGAACCTATGGATATTGTGCTCCTGAATATGCTCTCACGGGCCAATTGACAACAAAATCCGACATTTATAGCTTTGGAGTTGTGTTTTTGGAGATAATCACTGGGAGGAGAGTTATAGACAACAACAGACCAACTGAAGAGCAGAATTTGGTTACTTGGGCACAACCATTGTTTAAAGACAGAAGAAAATTTGTATTGATGGCAGACCCATTGCTACAAGGGAAATACCCCATAAAAGGACTTTACCAAGCACTTGCAGTTGCAGCTATGTGTCTCCAAGAGGAAGCTGCAACTCGGCCTCTGATCAGCGATGTTGTAACAGCTTTAGAATTTTTATCAGTAGATAACATTGGTGAAGGGGGTAATGAAAATATGGAGAATGACGGTGCAGATGAAGGTACTAAAGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042579 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

405

Amino Acids

45.2

Weight (kDa)

5.99

Isoelectric Point (pI)

32.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	105 - 319	2e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	107 - 310	1.2e-43	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20530 AT3G20530
fragaria_vesca	FvH4_3g22260
malus_domestica	MD03G1206400.v1.1 MD11G1221800.v1.1
prunus_persica	Prupe.4G209600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0038331
rosa_laevigata	RLG00000033847
rosa_multiflora	Rmu_sc0003632.1_g000006
rosa_rugosa	Rorug05G0172000
rosa_samantha	Rh5AG259400 Rh5CG295500 Rh5DG272200
rosa_wichuraiana	Rw5G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	788
AccII	CGCG	1 cut(s)	684
AciI	CCGC	1 cut(s)	682
AclWI	GGATC	3 cut(s)	540, 553, 617
AcoI	YGGCCR	1 cut(s)	537
AcsI	RAATTY	6 cut(s)	301, 428, 516, 946, 989, 1130
AcuI	CTGAAG	2 cut(s)	51, 957
AfaI	GTAC	2 cut(s)	533, 1201
AfiI	CCNNNNNNNGG	2 cut(s)	597, 1037
AgsI	TTSAA	9 cut(s)	58, 97, 121, 138, 179, 365, 644, 691, 724
AjnI	CCWGG	1 cut(s)	791
AjuI	GAANNNNNNNTTGG	4 cut(s)	306, 321, 338, 353
AluBI	AGCT	9 cut(s)	9, 131, 620, 695, 757, 873, 1067, 1088, 1124
AluI	AGCT	9 cut(s)	9, 131, 620, 695, 757, 873, 1067, 1088, 1124
Alw21I	GWGCWC	1 cut(s)	823
Alw26I	GTCTC	1 cut(s)	1079
AlwI	GGATC	3 cut(s)	540, 553, 617
AoxI	GGCC	5 cut(s)	147, 355, 537, 841, 1097
ApeKI	GCWGC	4 cut(s)	201, 629, 1064, 1088
ApoI	RAATTY	6 cut(s)	301, 428, 516, 946, 989, 1130
Asp700I	GAANNNNTTC	2 cut(s)	253, 410
AspLEI	GCGC	1 cut(s)	500
AspS9I	GGNCC	2 cut(s)	761, 841
AsuHPI	GGTGA	2 cut(s)	518, 1166
AvaII	GGWCC	1 cut(s)	761
BaeGI	GKGCMC	1 cut(s)	964
BalI	TGGCCA	1 cut(s)	539
BamHI	GGATCC	1 cut(s)	545
Bbv12I	GWGCWC	1 cut(s)	823
BbvI	GCAGC	4 cut(s)	213, 641, 1075, 1076
BccI	CCATC	2 cut(s)	497, 994
BciT130I	CCWGG	1 cut(s)	793
BclI	TGATCA	2 cut(s)	508, 1104
BcoDI	GTCTC	1 cut(s)	1079
BfaI	CTAG	5 cut(s)	45, 132, 551, 606, 749
BfmI	CTRYAG	2 cut(s)	126, 192
BisI	GCNGC	4 cut(s)	202, 630, 1065, 1089
BlsI	GCNGC	4 cut(s)	203, 631, 1066, 1090
Bme1390I	CCNGG	1 cut(s)	793
Bme18I	GGWCC	1 cut(s)	761
BmgT120I	GGNCC	2 cut(s)	761, 841
BmiI	GGNNCC	2 cut(s)	547, 805
BmrFI	CCNGG	1 cut(s)	793
BmrI	ACTGGG	2 cut(s)	777, 912
BmuI	ACTGGG	2 cut(s)	777, 912
BpmI	CTGGAG	1 cut(s)	645
BpuEI	CTTGAG	1 cut(s)	472
BsaBI	GATNNNNATC	1 cut(s)	507
BsaJI	CCNNGG	3 cut(s)	415, 591, 792
Bsc4I	CCNNNNNNNGG	2 cut(s)	597, 1037
Bse1I	ACTGG	3 cut(s)	628, 772, 907
Bse3DI	GCAATG	1 cut(s)	1010
Bse8I	GATNNNNATC	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	793
BseDI	CCNNGG	3 cut(s)	415, 591, 792
BseGI	GGATG	1 cut(s)	307
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	2 cut(s)	597, 1037
BseMI	GCAATG	1 cut(s)	1010
BseNI	ACTGG	3 cut(s)	628, 772, 907
BseRI	GAGGAG	1 cut(s)	922
BseSI	GKGCMC	1 cut(s)	964
BseXI	GCAGC	4 cut(s)	213, 641, 1075, 1076
BsgI	GTGCAG	1 cut(s)	1209
Bsh1236I	CGCG	1 cut(s)	684
BshFI	GGCC	5 cut(s)	149, 357, 539, 843, 1099
BsiHKAI	GWGCWC	1 cut(s)	823
BslI	CCNNNNNNNGG	2 cut(s)	597, 1037
BsmAI	GTCTC	1 cut(s)	1079
BsmI	GAATGC	1 cut(s)	371
BsnI	GGCC	5 cut(s)	149, 357, 539, 843, 1099
Bsp1286I	GDGCHC	2 cut(s)	823, 964
Bsp143I	GATC	6 cut(s)	447, 508, 545, 556, 609, 1104
BspACI	CCGC	1 cut(s)	682
BspANI	GGCC	5 cut(s)	149, 357, 539, 843, 1099
BspFNI	CGCG	1 cut(s)	684
BspLI	GGNNCC	2 cut(s)	547, 805
BspPI	GGATC	3 cut(s)	540, 553, 617
BspQI	GCTCTTC	1 cut(s)	933
BsrDI	GCAATG	1 cut(s)	1010
BsrI	ACTGG	3 cut(s)	628, 772, 907
BssECI	CCNNGG	3 cut(s)	415, 591, 792
BssMI	GATC	6 cut(s)	447, 508, 545, 556, 609, 1104
BssT1I	CCWWGG	2 cut(s)	415, 591
Bst2UI	CCWGG	1 cut(s)	793
Bst4CI	ACNGT	5 cut(s)	127, 193, 278, 708, 1187
Bst6I	CTCTTC	3 cut(s)	27, 337, 933
BstC8I	GCNNGC	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	307
BstFNI	CGCG	1 cut(s)	684
BstHHI	GCGC	1 cut(s)	500
BstKTI	GATC	6 cut(s)	450, 511, 548, 559, 612, 1107
BstMAI	GTCTC	1 cut(s)	1079
BstMBI	GATC	6 cut(s)	447, 508, 545, 556, 609, 1104
BstMWI	GCNNNNNNNGC	2 cut(s)	626, 1064
BstNI	CCWGG	1 cut(s)	793
BstNSI	RCATGY	1 cut(s)	28
BstSCI	CCNGG	1 cut(s)	791
BstSFI	CTRYAG	2 cut(s)	126, 192
BstSLI	GKGCMC	1 cut(s)	964
BstUI	CGCG	1 cut(s)	684
BstV1I	GCAGC	4 cut(s)	213, 641, 1075, 1076
BstX2I	RGATCY	1 cut(s)	545
BstXI	CCANNNNNNTGG	1 cut(s)	799
BstYI	RGATCY	1 cut(s)	545
BsuRI	GGCC	5 cut(s)	149, 357, 539, 843, 1099
BtgZI	GCGATG	1 cut(s)	1125
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	2 cut(s)	189, 900
Cac8I	GCNNGC	1 cut(s)	147
CfoI	GCGC	1 cut(s)	500
Cfr13I	GGNCC	2 cut(s)	761, 841
Csp6I	GTAC	2 cut(s)	532, 1200
CviAII	CATG	5 cut(s)	25, 464, 535, 653, 782
CviQI	GTAC	2 cut(s)	532, 1200
DpnI	GATC	6 cut(s)	449, 510, 547, 558, 611, 1106
DpnII	GATC	6 cut(s)	447, 508, 545, 556, 609, 1104
DraI	TTTAAA	1 cut(s)	976
EaeI	YGGCCR	1 cut(s)	537
Eam1104I	CTCTTC	3 cut(s)	27, 337, 933
EarI	CTCTTC	3 cut(s)	27, 337, 933
Eco130I	CCWWGG	2 cut(s)	415, 591
Eco47I	GGWCC	1 cut(s)	761
Eco57I	CTGAAG	2 cut(s)	51, 957
EcoRII	CCWGG	1 cut(s)	791
EcoT14I	CCWWGG	2 cut(s)	415, 591
ErhI	CCWWGG	2 cut(s)	415, 591
FaeI	CATG	5 cut(s)	28, 467, 538, 656, 785
FalI	AAGNNNNNCTT	4 cut(s)	345, 377, 546, 578
FatI	CATG	5 cut(s)	24, 463, 534, 652, 781
FbaI	TGATCA	2 cut(s)	508, 1104
FblI	GTMKAC	1 cut(s)	788
Fnu4HI	GCNGC	4 cut(s)	202, 630, 1065, 1089
FokI	GGATG	1 cut(s)	294
Fsp4HI	GCNGC	4 cut(s)	202, 630, 1065, 1089
FspBI	CTAG	5 cut(s)	45, 132, 551, 606, 749
GlaI	GCGC	1 cut(s)	499
GluI	GCNGC	4 cut(s)	202, 630, 1065, 1089
GsuI	CTGGAG	1 cut(s)	645
HaeIII	GGCC	5 cut(s)	149, 357, 539, 843, 1099
HhaI	GCGC	1 cut(s)	500
Hin1II	CATG	5 cut(s)	28, 467, 538, 656, 785
Hin6I	GCGC	1 cut(s)	498
HinP1I	GCGC	1 cut(s)	498
HincII	GTYRAC	2 cut(s)	172, 789
HindII	GTYRAC	2 cut(s)	172, 789
HindIII	AAGCTT	2 cut(s)	693, 755
HinfI	GANTC	2 cut(s)	411, 778
HpaI	GTTAAC	1 cut(s)	172
HphI	GGTGA	2 cut(s)	518, 1166
Hpy166II	GTNNAC	4 cut(s)	172, 281, 349, 789
Hpy188I	TCNGA	7 cut(s)	17, 31, 264, 729, 739, 862, 1104
Hpy188III	TCNNGA	4 cut(s)	311, 451, 566, 824
Hpy8I	GTNNAC	4 cut(s)	172, 281, 349, 789
HpyAV	CCTTC	5 cut(s)	127, 323, 467, 1151, 1190
HpyCH4III	ACNGT	5 cut(s)	127, 193, 278, 708, 1187
HpyCH4V	TGCA	7 cut(s)	24, 293, 369, 1058, 1064, 1091, 1190
HpyF10VI	GCNNNNNNNGC	2 cut(s)	626, 1064
Hsp92II	CATG	5 cut(s)	28, 467, 538, 656, 785
HspAI	GCGC	1 cut(s)	498
Ksp22I	TGATCA	2 cut(s)	508, 1104
KspAI	GTTAAC	1 cut(s)	172
Kzo9I	GATC	6 cut(s)	447, 508, 545, 556, 609, 1104
LguI	GCTCTTC	1 cut(s)	933
LmnI	GCTCC	3 cut(s)	472, 626, 826
Lsp1109I	GCAGC	4 cut(s)	213, 641, 1075, 1076
MaeI	CTAG	5 cut(s)	45, 132, 551, 606, 749
MaeIII	GTNAC	2 cut(s)	952, 1117
MalI	GATC	6 cut(s)	449, 510, 547, 558, 611, 1106
MboI	GATC	6 cut(s)	447, 508, 545, 556, 609, 1104
MboII	GAAGA	7 cut(s)	44, 354, 452, 554, 566, 950, 996
MfeI	CAATTG	1 cut(s)	845
MflI	RGATCY	1 cut(s)	545
MhlI	GDGCHC	2 cut(s)	823, 964
MlsI	TGGCCA	1 cut(s)	539
MluNI	TGGCCA	1 cut(s)	539
MlyI	GAGTC	1 cut(s)	787
MmeI	TCCRAC	3 cut(s)	723, 788, 885
MnlI	CCTC	5 cut(s)	160, 585, 900, 1075, 1110
Mox20I	TGGCCA	1 cut(s)	539
MroXI	GAANNNNTTC	2 cut(s)	253, 410
MscI	TGGCCA	1 cut(s)	539
MseI	TTAA	3 cut(s)	171, 390, 975
Msp20I	TGGCCA	1 cut(s)	539
MspR9I	CCNGG	1 cut(s)	793
MunI	CAATTG	1 cut(s)	845
Mva1269I	GAATGC	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	793
MvnI	CGCG	1 cut(s)	684
MwoI	GCNNNNNNNGC	2 cut(s)	626, 1064
NdeII	GATC	6 cut(s)	447, 508, 545, 556, 609, 1104
NlaIII	CATG	5 cut(s)	28, 467, 538, 656, 785
NlaIV	GGNNCC	2 cut(s)	547, 805
NmeAIII	GCCGAG	1 cut(s)	1075
NspI	RCATGY	1 cut(s)	28
PciSI	GCTCTTC	1 cut(s)	933
PctI	GAATGC	1 cut(s)	371
PdmI	GAANNNNTTC	2 cut(s)	253, 410
PfeI	GAWTC	1 cut(s)	411
PkrI	GCNGC	4 cut(s)	203, 631, 1066, 1090
PleI	GAGTC	1 cut(s)	786
PpsI	GAGTC	1 cut(s)	786
Psp6I	CCWGG	1 cut(s)	791
PspGI	CCWGG	1 cut(s)	791
PspN4I	GGNNCC	2 cut(s)	547, 805
PspPI	GGNCC	2 cut(s)	761, 841
PsuI	RGATCY	1 cut(s)	545
RsaI	GTAC	2 cut(s)	533, 1201
RsaNI	GTAC	2 cut(s)	532, 1200
SalI	GTCGAC	1 cut(s)	787
SapI	GCTCTTC	1 cut(s)	933
SaqAI	TTAA	3 cut(s)	171, 390, 975
SatI	GCNGC	4 cut(s)	202, 630, 1065, 1089
Sau3AI	GATC	6 cut(s)	447, 508, 545, 556, 609, 1104
Sau96I	GGNCC	2 cut(s)	761, 841
SchI	GAGTC	1 cut(s)	787
ScrFI	CCNGG	1 cut(s)	793
SduI	GDGCHC	2 cut(s)	823, 964
SfcI	CTRYAG	2 cut(s)	126, 192
SinI	GGWCC	1 cut(s)	761
SmlI	CTYRAG	1 cut(s)	451
SmoI	CTYRAG	1 cut(s)	451
SsiI	CCGC	1 cut(s)	682
SspI	AATATT	2 cut(s)	253, 317
SspMI	CTAG	5 cut(s)	45, 132, 551, 606, 749
StyD4I	CCNGG	1 cut(s)	791
StyI	CCWWGG	2 cut(s)	415, 591
TaaI	ACNGT	5 cut(s)	127, 193, 278, 708, 1187
TaqI	TCGA	1 cut(s)	788
TatI	WGTACW	1 cut(s)	531
TfiI	GAWTC	1 cut(s)	411
Tru1I	TTAA	3 cut(s)	171, 390, 975
Tru9I	TTAA	3 cut(s)	171, 390, 975
TscAI	CASTG	2 cut(s)	196, 907
TseI	GCWGC	4 cut(s)	201, 629, 1064, 1088
TspDTI	ATGAA	7 cut(s)	240, 296, 452, 669, 729, 1182, 1209
TspRI	CASTG	2 cut(s)	196, 907
VpaK11BI	GGWCC	1 cut(s)	761
XapI	RAATTY	6 cut(s)	301, 428, 516, 946, 989, 1130
XceI	RCATGY	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	788
XmnI	GAANNNNTTC	2 cut(s)	253, 410
XspI	CTAG	5 cut(s)	45, 132, 551, 606, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.