Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016480

Physical Location & Seq

Genomic Coordinates Reverse (-)

15261375 .. 15263839

Gene Structure 2465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g22260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGATGAGTTGTTTCCAGTGTTGCATGTCCGAAGAGAAAATCGCCAGAAAGTCCTTGAAAAAGAGCATAAAGGAATACCATGACACCAAAACTTTGAACTCCTTTGCTAACATCTCCTTCAAAACTGATAGCAGTAGGAGAAAGTACATCACGGATGAAATAGCAAAGATAGGCAAAGGAAATATTGCTGCTCGGATTTTCACTTACCGCGAACTATGTGTTGCAACTCAAAACTTCCATCCTGATAATTTGCTTGGCGAAGGTGGTTTTGGAAGGGTTTACAAAGGCCACCTTGATTGCACCAACCAAGTGGTTGCGGTTAAGCAATTAGACAGGAATGGATTCCAAGGGAACAGAGAATTTCTTGTAGAAGTTTTGATATTGAGTCTTATTCATGCTCCCAACCTTGTTAATTTGGTGGGATATTGCGCTGATGGTGATCAGAGAATTTTGGTGTATGAGTACATGGCCAATGGATCCCTAGAAGATCATCTTCTTGAAATACCTCCAGACAAAAAGCCCTTAGACTGGGAAACTAGGATCAAAATAGCTGCTGGAGCTGCAAAAGGACTTGAATATCTACATGAACAAGCAAATCCCCCTGTCATATACCGCGATTTTAAAGCATCCAACATTCTGTTAGACGAAAACTTCAATCCGAAACTATCTGATTTTGGCCTGGCAAAGCTTGGTCCAACTGGGGATAAGACTCATGTATCCACCAGGGTGATGGGAACCTATGGATATTGTGCTCCTGAATATGCTCTCACTGGCCAATTGACAACGAAATCTGACATTTATAGCTTTGGAGTTGTATTTTTGGAGATAATAACAGGGAGGAGGGTTATAGACAACAGCAGACCAACTGAAGAGCAAAATTTGGTTACTTGGGCACAACCATTGTTTAAAGACAGAAGGAAATTTGTATTGATGGCAGACCCATTACTAGAAGGGAAATACCCCATAAAGGGGCTTTACCAAGCACTTGCAGTTGCAGCTATGTGTCTCCAAGAGGAAGCTGCAACGCGGCCTCTAATCAGCGATGTTGTAACAGCTTTAGAATTTTTATCAGTAGACCACCTTGGTGAAGAGGGTAATGGAAATGAGGAGAATGATGGTGCAGATGAGGGTGGTATTAAAGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042579 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

383

Amino Acids

42.65

Weight (kDa)

5.53

Isoelectric Point (pI)

28.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	80 - 296	1.9e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	83 - 288	9.2e-44	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20530 AT3G20530
fragaria_vesca	FvH4_3g22260
malus_domestica	MD03G1206400.v1.1 MD11G1221800.v1.1
prunus_persica	Prupe.4G209600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0038331
rosa_laevigata	RLG00000033847
rosa_multiflora	Rmu_sc0003632.1_g000006
rosa_rugosa	Rorug05G0172000
rosa_samantha	Rh5AG259400 Rh5CG295500 Rh5DG272200
rosa_wichuraiana	Rw5G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1074
AccII	CGCG	3 cut(s)	210, 615, 1027
AciI	CCGC	4 cut(s)	208, 317, 613, 1027
AclWI	GGATC	3 cut(s)	471, 484, 548
AcoI	YGGCCR	2 cut(s)	468, 772
AcsI	RAATTY	5 cut(s)	359, 447, 877, 920, 1061
AcuI	CTGAAG	1 cut(s)	888
AfaI	GTAC	2 cut(s)	146, 464
AfiI	CCNNNNNNNGG	4 cut(s)	528, 967, 968, 969
AgsI	TTSAA	6 cut(s)	58, 97, 121, 500, 575, 655
AjnI	CCWGG	2 cut(s)	678, 722
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
AleI	CACNNNNGTG	2 cut(s)	725, 1083
AluBI	AGCT	7 cut(s)	551, 560, 688, 804, 998, 1019, 1055
AluI	AGCT	7 cut(s)	551, 560, 688, 804, 998, 1019, 1055
Alw21I	GWGCWC	1 cut(s)	754
Alw26I	GTCTC	1 cut(s)	1010
AlwI	GGATC	3 cut(s)	471, 484, 548
AoxI	GGCC	5 cut(s)	286, 468, 676, 772, 1028
ApeKI	GCWGC	5 cut(s)	188, 551, 560, 995, 1019
ApoI	RAATTY	5 cut(s)	359, 447, 877, 920, 1061
Asp700I	GAANNNNTTC	1 cut(s)	341
AspLEI	GCGC	1 cut(s)	431
AspS9I	GGNCC	1 cut(s)	692
AsuHPI	GGTGA	3 cut(s)	449, 739, 1097
AvaII	GGWCC	1 cut(s)	692
BaeGI	GKGCMC	1 cut(s)	895
BaeI	ACNNNNGTAYC	2 cut(s)	699, 732
BalI	TGGCCA	2 cut(s)	470, 774
BamHI	GGATCC	1 cut(s)	476
Bbv12I	GWGCWC	1 cut(s)	754
BbvI	GCAGC	5 cut(s)	175, 538, 547, 1006, 1007
BccI	CCATC	5 cut(s)	246, 428, 724, 925, 1109
BciT130I	CCWGG	2 cut(s)	680, 724
BciVI	GTATCC	1 cut(s)	727
BclI	TGATCA	1 cut(s)	439
BcoDI	GTCTC	1 cut(s)	1010
BfaI	CTAG	3 cut(s)	482, 537, 947
BfuI	GTATCC	1 cut(s)	727
BisI	GCNGC	6 cut(s)	189, 552, 561, 996, 1020, 1028
BlsI	GCNGC	6 cut(s)	190, 553, 562, 997, 1021, 1029
Bme1390I	CCNGG	2 cut(s)	680, 724
Bme18I	GGWCC	1 cut(s)	692
BmgT120I	GGNCC	1 cut(s)	692
BmiI	GGNNCC	2 cut(s)	478, 736
BmrFI	CCNGG	2 cut(s)	680, 724
BmrI	ACTGGG	2 cut(s)	538, 708
BmsI	GCATC	1 cut(s)	635
BmuI	ACTGGG	2 cut(s)	538, 708
BpmI	CTGGAG	2 cut(s)	492, 576
BsaBI	GATNNNNATC	1 cut(s)	438
BsaJI	CCNNGG	3 cut(s)	346, 723, 1081
Bsc4I	CCNNNNNNNGG	4 cut(s)	528, 967, 968, 969
Bse1I	ACTGG	4 cut(s)	16, 533, 703, 775
Bse8I	GATNNNNATC	1 cut(s)	438
BseBI	CCWGG	2 cut(s)	680, 724
BseDI	CCNNGG	3 cut(s)	346, 723, 1081
BseGI	GGATG	3 cut(s)	160, 238, 626
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	4 cut(s)	528, 967, 968, 969
BseNI	ACTGG	4 cut(s)	16, 533, 703, 775
BseRI	GAGGAG	2 cut(s)	853, 1121
BseSI	GKGCMC	1 cut(s)	895
BseXI	GCAGC	5 cut(s)	175, 538, 547, 1006, 1007
BsgI	GTGCAG	1 cut(s)	1140
Bsh1236I	CGCG	3 cut(s)	210, 615, 1027
BshFI	GGCC	5 cut(s)	288, 470, 678, 774, 1030
BsiHKAI	GWGCWC	1 cut(s)	754
BslI	CCNNNNNNNGG	4 cut(s)	528, 967, 968, 969
BsmAI	GTCTC	1 cut(s)	1010
BsnI	GGCC	5 cut(s)	288, 470, 678, 774, 1030
Bsp1286I	GDGCHC	2 cut(s)	754, 895
Bsp143I	GATC	4 cut(s)	439, 476, 487, 540
BspACI	CCGC	4 cut(s)	208, 317, 613, 1027
BspANI	GGCC	5 cut(s)	288, 470, 678, 774, 1030
BspFNI	CGCG	3 cut(s)	210, 615, 1027
BspLI	GGNNCC	2 cut(s)	478, 736
BspPI	GGATC	3 cut(s)	471, 484, 548
BspQI	GCTCTTC	1 cut(s)	864
BsrI	ACTGG	4 cut(s)	16, 533, 703, 775
BssECI	CCNNGG	3 cut(s)	346, 723, 1081
BssMI	GATC	4 cut(s)	439, 476, 487, 540
BssT1I	CCWWGG	2 cut(s)	346, 1081
Bst2UI	CCWGG	2 cut(s)	680, 724
Bst6I	CTCTTC	3 cut(s)	27, 864, 1083
BstDEI	CTNAG	1 cut(s)	523
BstF5I	GGATG	3 cut(s)	160, 238, 626
BstFNI	CGCG	3 cut(s)	210, 615, 1027
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	4 cut(s)	442, 479, 490, 543
BstMAI	GTCTC	1 cut(s)	1010
BstMBI	GATC	4 cut(s)	439, 476, 487, 540
BstMWI	GCNNNNNNNGC	3 cut(s)	557, 560, 995
BstNI	CCWGG	2 cut(s)	680, 724
BstNSI	RCATGY	1 cut(s)	28
BstSCI	CCNGG	2 cut(s)	678, 722
BstSLI	GKGCMC	1 cut(s)	895
BstUI	CGCG	3 cut(s)	210, 615, 1027
BstV1I	GCAGC	5 cut(s)	175, 538, 547, 1006, 1007
BstX2I	RGATCY	1 cut(s)	476
BstXI	CCANNNNNNTGG	2 cut(s)	310, 730
BstYI	RGATCY	1 cut(s)	476
BsuI	GTATCC	1 cut(s)	727
BsuRI	GGCC	5 cut(s)	288, 470, 678, 774, 1030
BtgZI	GCGATG	1 cut(s)	1056
BtsCI	GGATG	3 cut(s)	160, 238, 626
BtsIMutI	CAGTG	2 cut(s)	23, 768
CfoI	GCGC	1 cut(s)	431
Cfr13I	GGNCC	1 cut(s)	692
Csp6I	GTAC	2 cut(s)	145, 463
CspCI	CAANNNNNGTGG	2 cut(s)	278, 313
CviAII	CATG	6 cut(s)	25, 80, 395, 466, 584, 713
CviQI	GTAC	2 cut(s)	145, 463
DdeI	CTNAG	1 cut(s)	523
DpnI	GATC	4 cut(s)	441, 478, 489, 542
DpnII	GATC	4 cut(s)	439, 476, 487, 540
DraI	TTTAAA	2 cut(s)	622, 907
EaeI	YGGCCR	2 cut(s)	468, 772
Eam1104I	CTCTTC	3 cut(s)	27, 864, 1083
EarI	CTCTTC	3 cut(s)	27, 864, 1083
Eco130I	CCWWGG	2 cut(s)	346, 1081
Eco47I	GGWCC	1 cut(s)	692
Eco57I	CTGAAG	1 cut(s)	888
EcoRII	CCWGG	2 cut(s)	678, 722
EcoT14I	CCWWGG	2 cut(s)	346, 1081
ErhI	CCWWGG	2 cut(s)	346, 1081
FaeI	CATG	6 cut(s)	28, 83, 398, 469, 587, 716
FalI	AAGNNNNNCTT	4 cut(s)	276, 308, 477, 509
FatI	CATG	6 cut(s)	24, 79, 394, 465, 583, 712
FbaI	TGATCA	1 cut(s)	439
FblI	GTMKAC	1 cut(s)	1074
Fnu4HI	GCNGC	6 cut(s)	189, 552, 561, 996, 1020, 1028
FokI	GGATG	3 cut(s)	167, 225, 613
Fsp4HI	GCNGC	6 cut(s)	189, 552, 561, 996, 1020, 1028
FspBI	CTAG	3 cut(s)	482, 537, 947
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	6 cut(s)	189, 552, 561, 996, 1020, 1028
GsuI	CTGGAG	2 cut(s)	492, 576
HaeIII	GGCC	5 cut(s)	288, 470, 678, 774, 1030
HhaI	GCGC	1 cut(s)	431
Hin1II	CATG	6 cut(s)	28, 83, 398, 469, 587, 716
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	3 cut(s)	342, 385, 709
HphI	GGTGA	3 cut(s)	449, 739, 1097
Hpy166II	GTNNAC	2 cut(s)	280, 1075
Hpy188I	TCNGA	6 cut(s)	31, 195, 444, 660, 670, 793
Hpy188III	TCNNGA	4 cut(s)	242, 497, 509, 755
Hpy8I	GTNNAC	2 cut(s)	280, 1075
HpyAV	CCTTC	5 cut(s)	127, 254, 267, 909, 944
HpyCH4V	TGCA	8 cut(s)	24, 224, 300, 563, 989, 995, 1022, 1121
HpyF10VI	GCNNNNNNNGC	3 cut(s)	557, 560, 995
HpyF3I	CTNAG	1 cut(s)	523
Hsp92II	CATG	6 cut(s)	28, 83, 398, 469, 587, 716
HspAI	GCGC	1 cut(s)	429
Ksp22I	TGATCA	1 cut(s)	439
Kzo9I	GATC	4 cut(s)	439, 476, 487, 540
LguI	GCTCTTC	1 cut(s)	864
LmnI	GCTCC	3 cut(s)	403, 557, 757
Lsp1109I	GCAGC	5 cut(s)	175, 538, 547, 1006, 1007
LweI	GCATC	1 cut(s)	635
MaeI	CTAG	3 cut(s)	482, 537, 947
MaeIII	GTNAC	2 cut(s)	883, 1048
MalI	GATC	4 cut(s)	441, 478, 489, 542
MboI	GATC	4 cut(s)	439, 476, 487, 540
MboII	GAAGA	5 cut(s)	44, 485, 497, 881, 1100
MfeI	CAATTG	1 cut(s)	776
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	2 cut(s)	754, 895
MlsI	TGGCCA	2 cut(s)	470, 774
MluCI	AATT	9 cut(s)	247, 326, 359, 412, 447, 776, 877, 920, 1061
MluNI	TGGCCA	2 cut(s)	470, 774
MlyI	GAGTC	2 cut(s)	394, 703
MmeI	TCCRAC	2 cut(s)	654, 719
MnlI	CCTC	8 cut(s)	516, 831, 834, 1006, 1041, 1084, 1099, 1120
Mox20I	TGGCCA	2 cut(s)	470, 774
MroXI	GAANNNNTTC	1 cut(s)	341
MscI	TGGCCA	2 cut(s)	470, 774
MseI	TTAA	5 cut(s)	321, 411, 621, 906, 1137
MslI	CAYNNNNRTG	2 cut(s)	725, 1083
Msp20I	TGGCCA	2 cut(s)	470, 774
MspR9I	CCNGG	2 cut(s)	680, 724
MunI	CAATTG	1 cut(s)	776
MvaI	CCWGG	2 cut(s)	680, 724
MvnI	CGCG	3 cut(s)	210, 615, 1027
MwoI	GCNNNNNNNGC	3 cut(s)	557, 560, 995
NdeII	GATC	4 cut(s)	439, 476, 487, 540
NlaIII	CATG	6 cut(s)	28, 83, 398, 469, 587, 716
NlaIV	GGNNCC	2 cut(s)	478, 736
NspI	RCATGY	1 cut(s)	28
OliI	CACNNNNGTG	2 cut(s)	725, 1083
PciSI	GCTCTTC	1 cut(s)	864
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	342
PkrI	GCNGC	6 cut(s)	190, 553, 562, 997, 1021, 1029
PleI	GAGTC	2 cut(s)	393, 703
PpsI	GAGTC	2 cut(s)	393, 703
Psp6I	CCWGG	2 cut(s)	678, 722
PspGI	CCWGG	2 cut(s)	678, 722
PspN4I	GGNNCC	2 cut(s)	478, 736
PspPI	GGNCC	1 cut(s)	692
PsuI	RGATCY	1 cut(s)	476
RsaI	GTAC	2 cut(s)	146, 464
RsaNI	GTAC	2 cut(s)	145, 463
RseI	CAYNNNNRTG	2 cut(s)	725, 1083
SapI	GCTCTTC	1 cut(s)	864
SaqAI	TTAA	5 cut(s)	321, 411, 621, 906, 1137
SatI	GCNGC	6 cut(s)	189, 552, 561, 996, 1020, 1028
Sau3AI	GATC	4 cut(s)	439, 476, 487, 540
Sau96I	GGNCC	1 cut(s)	692
SchI	GAGTC	2 cut(s)	394, 703
ScrFI	CCNGG	2 cut(s)	680, 724
SduI	GDGCHC	2 cut(s)	754, 895
SfaNI	GCATC	1 cut(s)	635
SinI	GGWCC	1 cut(s)	692
SmiMI	CAYNNNNRTG	2 cut(s)	725, 1083
Sse9I	AATT	9 cut(s)	247, 326, 359, 412, 447, 776, 877, 920, 1061
SsiI	CCGC	4 cut(s)	208, 317, 613, 1027
SspI	AATATT	1 cut(s)	184
SspMI	CTAG	3 cut(s)	482, 537, 947
StyD4I	CCNGG	2 cut(s)	678, 722
StyI	CCWWGG	2 cut(s)	346, 1081
TasI	AATT	9 cut(s)	247, 326, 359, 412, 447, 776, 877, 920, 1061
TatI	WGTACW	2 cut(s)	144, 462
TauI	GCSGC	1 cut(s)	1030
TfiI	GAWTC	1 cut(s)	342
Tru1I	TTAA	5 cut(s)	321, 411, 621, 906, 1137
Tru9I	TTAA	5 cut(s)	321, 411, 621, 906, 1137
TscAI	CASTG	2 cut(s)	23, 775
TseI	GCWGC	5 cut(s)	188, 551, 560, 995, 1019
TspDTI	ATGAA	3 cut(s)	171, 383, 600
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	2 cut(s)	23, 775
VpaK11BI	GGWCC	1 cut(s)	692
XapI	RAATTY	5 cut(s)	359, 447, 877, 920, 1061
XceI	RCATGY	1 cut(s)	28
XcmI	CCANNNNNNNNNTGG	1 cut(s)	727
XmiI	GTMKAC	1 cut(s)	1074
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	3 cut(s)	482, 537, 947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.