Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0016480

Physical Location & Seq

Genomic Coordinates Forward (+)

32497322 .. 32499444

Gene Structure 2123 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1221800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGAATTGCTTCCAATGTTGCATGTCAGAAGAGAAAATCACCAGGAAGTCGTTAAAAAAGAGTATCAAGGAATACCATGACACCAAAACTTTAGCCTCTTTTGCTAACATTTCGTTCAAAACAGACAGCAGCAGGAGGAAGTACATAGCGGAAGAGATAGCAAAGGTTGGCAAAGGAAATATTTCGGCTCAGATTTTTGCTTTCCGGGAACTTTGTGTTGCAACTAACAACTTCCATCCAGACAAATTGATAGGCGAAGGCGGTTTTGGGAGGGTTTACAAAGGGAAACTTGATGGCACAGAACAAGTTGTTGCTGTTAAGCAACTAGACAGGAATGGATTCCAAGGAAACAGAGAGTTCCTTGTAGAAGTTTTGATATTAAGTCTTCTTCACCATCCCTACCTCGTCAATTTGGTTGGGTATTGCGCGGACGGCGATCAGAGGATTTTGGTGTATGAGTACATGGCGAATGGATCCCTAGAGGACCATCTTCTTGATTTAGCTCCAGGAAAAAAGCCCTTGGCTTGGAATACTAGGATGAAAATTGCAGCAGGGGCAGCAAAAGGACTTGAATACTTGCACGAACAAGCGAATCCCCCTGTGATATACCGGGATTTCAAAGCATCCAACATACTTTTGGATGAGAACTTCAATCCAAAACTCTCTGATTTTGGTCTTGCAAAGTTAGGTCCAACTGGGGGTAAGACTCATGTATCCACCAGGGTGATGGGGACCTATGGCTATTGTGCACCTGAATATGCACTCACAGGGCAGTTGACAACGAAATCCGACATTTACAGCTTTGGAGTTGTGTTTTTGGAGATAATCACAGGACGGAGAGTCATAGACAATAACAGACCAACTGAGGAGCAGAATTTAGTTACTTGGGCACAACCATTATTTAAAGACAGAAGGAAGTTTACATTAATGGTAGATCCATTGCTAGAAGGGAAGTACCATATCAAGGGTCTTTACCAAGCTCTTGCTGTTGCAGCAATGTGTCTCCAAGAAGAGGCTGCTACACGACCGCTGATCAGTGACGTTGTAACGGCGTTAGAGTATTTAGCCGTAGATGGTGAAGCAGATGATACGAATGGTGATGGAAATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042579 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

371

Amino Acids

41.18

Weight (kDa)

6.72

Isoelectric Point (pI)

24.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	79 - 303	6.3e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	81 - 286	6e-44	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20530 AT3G20530
fragaria_vesca	FvH4_3g22260
malus_domestica	MD03G1206400.v1.1 MD11G1221800.v1.1
prunus_persica	Prupe.4G209600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0038331
rosa_laevigata	RLG00000033847
rosa_multiflora	Rmu_sc0003632.1_g000006
rosa_rugosa	Rorug05G0172000
rosa_samantha	Rh5AG259400 Rh5CG295500 Rh5DG272200
rosa_wichuraiana	Rw5G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	428
AciI	CCGC	4 cut(s)	149, 261, 428, 1028
AclWI	GGATC	3 cut(s)	468, 481, 929
AcsI	RAATTY	1 cut(s)	874
AfaI	GTAC	3 cut(s)	143, 461, 956
AfiI	CCNNNNNNNGG	4 cut(s)	525, 698, 964, 1012
AgsI	TTSAA	4 cut(s)	118, 572, 619, 652
AhdI	GACNNNNNGTC	1 cut(s)	839
AjnI	CCWGG	3 cut(s)	41, 505, 719
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AleI	CACNNNNGTG	1 cut(s)	722
AluBI	AGCT	3 cut(s)	503, 801, 980
AluI	AGCT	3 cut(s)	503, 801, 980
Alw21I	GWGCWC	1 cut(s)	751
Alw26I	GTCTC	1 cut(s)	1007
Alw44I	GTGCAC	1 cut(s)	747
AlwI	GGATC	3 cut(s)	468, 481, 929
ApaLI	GTGCAC	1 cut(s)	747
ApeKI	GCWGC	5 cut(s)	129, 548, 557, 992, 1016
ApoI	RAATTY	1 cut(s)	874
AseI	ATTAAT	1 cut(s)	926
Asp700I	GAANNNNTTC	3 cut(s)	8, 181, 338
AspLEI	GCGC	1 cut(s)	428
AspS9I	GGNCC	3 cut(s)	484, 689, 732
AsuC2I	CCSGG	2 cut(s)	206, 611
AsuHPI	GGTGA	5 cut(s)	31, 383, 736, 1088, 1109
AvaII	GGWCC	3 cut(s)	484, 689, 732
BaeGI	GKGCMC	2 cut(s)	751, 892
BaeI	ACNNNNGTAYC	2 cut(s)	696, 729
BamHI	GGATCC	1 cut(s)	473
BarI	GAAGNNNNNNTAC	2 cut(s)	904, 936
BbsI	GAAGAC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	751
BbvI	GCAGC	5 cut(s)	141, 560, 569, 1003, 1004
BccI	CCATC	7 cut(s)	243, 287, 402, 495, 721, 1067, 1094
BceAI	ACGGC	3 cut(s)	448, 1052, 1065
BciT130I	CCWGG	3 cut(s)	43, 507, 721
BciVI	GTATCC	1 cut(s)	724
BclI	TGATCA	1 cut(s)	1032
BcnI	CCSGG	2 cut(s)	206, 611
BcoDI	GTCTC	1 cut(s)	1007
BfaI	CTAG	4 cut(s)	326, 479, 534, 944
BfuI	GTATCC	1 cut(s)	724
BisI	GCNGC	5 cut(s)	130, 549, 558, 993, 1017
BlsI	GCNGC	5 cut(s)	131, 550, 559, 994, 1018
Bme1390I	CCNGG	5 cut(s)	43, 206, 507, 611, 721
Bme18I	GGWCC	3 cut(s)	484, 689, 732
BmeRI	GACNNNNNGTC	1 cut(s)	839
BmgT120I	GGNCC	3 cut(s)	484, 689, 732
BmiI	GGNNCC	2 cut(s)	475, 733
BmrFI	CCNGG	5 cut(s)	43, 206, 507, 611, 721
BmrI	ACTGGG	1 cut(s)	705
BmsI	GCATC	1 cut(s)	632
BmuI	ACTGGG	1 cut(s)	705
BpiI	GAAGAC	1 cut(s)	377
BpmI	CTGGAG	1 cut(s)	489
BpuMI	CCSGG	2 cut(s)	206, 611
BsaJI	CCNNGG	3 cut(s)	343, 519, 720
Bsc4I	CCNNNNNNNGG	4 cut(s)	525, 698, 964, 1012
Bse1I	ACTGG	1 cut(s)	700
Bse3DI	GCAATG	2 cut(s)	938, 1002
BseBI	CCWGG	3 cut(s)	43, 507, 721
BseDI	CCNNGG	3 cut(s)	343, 519, 720
BseGI	GGATG	5 cut(s)	235, 394, 543, 623, 646
BseLI	CCNNNNNNNGG	4 cut(s)	525, 698, 964, 1012
BseMI	GCAATG	2 cut(s)	938, 1002
BseMII	CTCAG	2 cut(s)	203, 855
BseNI	ACTGG	1 cut(s)	700
BseRI	GAGGAG	1 cut(s)	881
BseSI	GKGCMC	2 cut(s)	751, 892
BseXI	GCAGC	5 cut(s)	141, 560, 569, 1003, 1004
Bsh1236I	CGCG	1 cut(s)	428
Bsh1285I	CGRYCG	1 cut(s)	1028
BsiEI	CGRYCG	1 cut(s)	1028
BsiHKAI	GWGCWC	1 cut(s)	751
BsiSI	CCGG	2 cut(s)	205, 610
BslFI	GGGAC	1 cut(s)	745
BslI	CCNNNNNNNGG	4 cut(s)	525, 698, 964, 1012
BsmAI	GTCTC	1 cut(s)	1007
BsmFI	GGGAC	1 cut(s)	745
Bsp1286I	GDGCHC	2 cut(s)	751, 892
Bsp143I	GATC	4 cut(s)	436, 473, 934, 1032
BspACI	CCGC	4 cut(s)	149, 261, 428, 1028
BspCNI	CTCAG	2 cut(s)	202, 856
BspFNI	CGCG	1 cut(s)	428
BspLI	GGNNCC	2 cut(s)	475, 733
BspPI	GGATC	3 cut(s)	468, 481, 929
BsrDI	GCAATG	2 cut(s)	938, 1002
BsrI	ACTGG	1 cut(s)	700
BssECI	CCNNGG	3 cut(s)	343, 519, 720
BssMI	GATC	4 cut(s)	436, 473, 934, 1032
BssT1I	CCWWGG	2 cut(s)	343, 519
Bst2UI	CCWGG	3 cut(s)	43, 507, 721
Bst6I	CTCTTC	3 cut(s)	24, 147, 1005
BstDEI	CTNAG	2 cut(s)	189, 864
BstF5I	GGATG	5 cut(s)	235, 394, 543, 623, 646
BstFNI	CGCG	1 cut(s)	428
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	4 cut(s)	439, 476, 937, 1035
BstMAI	GTCTC	1 cut(s)	1007
BstMBI	GATC	4 cut(s)	436, 473, 934, 1032
BstMCI	CGRYCG	1 cut(s)	1028
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 432, 554, 557, 992
BstNI	CCWGG	3 cut(s)	43, 507, 721
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	5 cut(s)	41, 204, 505, 609, 719
BstSLI	GKGCMC	2 cut(s)	751, 892
BstUI	CGCG	1 cut(s)	428
BstV1I	GCAGC	5 cut(s)	141, 560, 569, 1003, 1004
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	2 cut(s)	473, 934
BstXI	CCANNNNNNTGG	1 cut(s)	727
BstYI	RGATCY	2 cut(s)	473, 934
BsuI	GTATCC	1 cut(s)	724
BtsCI	GGATG	5 cut(s)	235, 394, 543, 623, 646
BtsIMutI	CAGTG	1 cut(s)	1042
CfoI	GCGC	1 cut(s)	428
Cfr13I	GGNCC	3 cut(s)	484, 689, 732
Csp6I	GTAC	3 cut(s)	142, 460, 955
CviAII	CATG	4 cut(s)	22, 77, 463, 710
CviQI	GTAC	3 cut(s)	142, 460, 955
DdeI	CTNAG	2 cut(s)	189, 864
DpnI	GATC	4 cut(s)	438, 475, 936, 1034
DpnII	GATC	4 cut(s)	436, 473, 934, 1032
DraI	TTTAAA	1 cut(s)	904
DriI	GACNNNNNGTC	1 cut(s)	839
Eam1104I	CTCTTC	3 cut(s)	24, 147, 1005
Eam1105I	GACNNNNNGTC	1 cut(s)	839
EarI	CTCTTC	3 cut(s)	24, 147, 1005
Eco130I	CCWWGG	2 cut(s)	343, 519
Eco47I	GGWCC	3 cut(s)	484, 689, 732
EcoO109I	RGGNCCY	1 cut(s)	732
EcoRII	CCWGG	3 cut(s)	41, 505, 719
EcoT14I	CCWWGG	2 cut(s)	343, 519
ErhI	CCWWGG	2 cut(s)	343, 519
FaeI	CATG	4 cut(s)	25, 80, 466, 713
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FaqI	GGGAC	1 cut(s)	745
FatI	CATG	4 cut(s)	21, 76, 462, 709
FbaI	TGATCA	1 cut(s)	1032
Fnu4HI	GCNGC	5 cut(s)	130, 549, 558, 993, 1017
FokI	GGATG	5 cut(s)	222, 381, 550, 610, 653
Fsp4HI	GCNGC	5 cut(s)	130, 549, 558, 993, 1017
FspBI	CTAG	4 cut(s)	326, 479, 534, 944
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	5 cut(s)	130, 549, 558, 993, 1017
GsuI	CTGGAG	1 cut(s)	489
HapII	CCGG	2 cut(s)	205, 610
HhaI	GCGC	1 cut(s)	428
Hin1II	CATG	4 cut(s)	25, 80, 466, 713
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HincII	GTYRAC	1 cut(s)	777
HindII	GTYRAC	1 cut(s)	777
HinfI	GANTC	4 cut(s)	339, 592, 706, 840
HpaII	CCGG	2 cut(s)	205, 610
HphI	GGTGA	5 cut(s)	31, 383, 736, 1088, 1109
Hpy166II	GTNNAC	4 cut(s)	277, 749, 777, 921
Hpy188I	TCNGA	6 cut(s)	28, 192, 441, 667, 790, 1112
Hpy188III	TCNNGA	2 cut(s)	239, 494
Hpy8I	GTNNAC	4 cut(s)	277, 749, 777, 921
HpyAV	CCTTC	3 cut(s)	251, 906, 941
HpyCH4IV	ACGT	1 cut(s)	1041
HpyCH4V	TGCA	8 cut(s)	21, 221, 548, 580, 680, 749, 761, 992
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 432, 554, 557, 992
HpyF3I	CTNAG	2 cut(s)	189, 864
HpySE526I	ACGT	1 cut(s)	1041
Hsp92II	CATG	4 cut(s)	25, 80, 466, 713
HspAI	GCGC	1 cut(s)	426
Ksp22I	TGATCA	1 cut(s)	1032
Kzo9I	GATC	4 cut(s)	436, 473, 934, 1032
LmnI	GCTCC	2 cut(s)	508, 868
Lsp1109I	GCAGC	5 cut(s)	141, 560, 569, 1003, 1004
LweI	GCATC	1 cut(s)	632
MaeI	CTAG	4 cut(s)	326, 479, 534, 944
MaeII	ACGT	1 cut(s)	1041
MaeIII	GTNAC	3 cut(s)	880, 1037, 1045
MalI	GATC	4 cut(s)	438, 475, 936, 1034
MboI	GATC	4 cut(s)	436, 473, 934, 1032
MboII	GAAGA	6 cut(s)	41, 164, 377, 380, 482, 1022
MflI	RGATCY	2 cut(s)	473, 934
MhlI	GDGCHC	2 cut(s)	751, 892
MluCI	AATT	5 cut(s)	4, 245, 409, 543, 874
MlyI	GAGTC	2 cut(s)	700, 849
MmeI	TCCRAC	3 cut(s)	651, 716, 813
MnlI	CCTC	8 cut(s)	106, 129, 264, 413, 435, 475, 859, 1006
MroXI	GAANNNNTTC	3 cut(s)	8, 181, 338
MseI	TTAA	5 cut(s)	53, 318, 380, 903, 926
MslI	CAYNNNNRTG	1 cut(s)	722
MspA1I	CMGCKG	1 cut(s)	1030
MspI	CCGG	2 cut(s)	205, 610
MspR9I	CCNGG	5 cut(s)	43, 206, 507, 611, 721
MvaI	CCWGG	3 cut(s)	43, 507, 721
MvnI	CGCG	1 cut(s)	428
MwoI	GCNNNNNNNGC	5 cut(s)	101, 432, 554, 557, 992
NciI	CCSGG	2 cut(s)	206, 611
NdeII	GATC	4 cut(s)	436, 473, 934, 1032
NlaIII	CATG	4 cut(s)	25, 80, 466, 713
NlaIV	GGNNCC	2 cut(s)	475, 733
NmuCI	GTSAC	1 cut(s)	1037
NspI	RCATGY	1 cut(s)	25
OliI	CACNNNNGTG	1 cut(s)	722
PdmI	GAANNNNTTC	3 cut(s)	8, 181, 338
PfeI	GAWTC	2 cut(s)	339, 592
PfoI	TCCNGGA	2 cut(s)	204, 505
PkrI	GCNGC	5 cut(s)	131, 550, 559, 994, 1018
PleI	GAGTC	2 cut(s)	700, 848
PpsI	GAGTC	2 cut(s)	700, 848
PpuMI	RGGWCCY	1 cut(s)	732
PshBI	ATTAAT	1 cut(s)	926
Psp5II	RGGWCCY	1 cut(s)	732
Psp6I	CCWGG	3 cut(s)	41, 505, 719
PspGI	CCWGG	3 cut(s)	41, 505, 719
PspN4I	GGNNCC	2 cut(s)	475, 733
PspPI	GGNCC	3 cut(s)	484, 689, 732
PspPPI	RGGWCCY	1 cut(s)	732
PsuI	RGATCY	2 cut(s)	473, 934
RsaI	GTAC	3 cut(s)	143, 461, 956
RsaNI	GTAC	3 cut(s)	142, 460, 955
RseI	CAYNNNNRTG	1 cut(s)	722
SaqAI	TTAA	5 cut(s)	53, 318, 380, 903, 926
SatI	GCNGC	5 cut(s)	130, 549, 558, 993, 1017
Sau3AI	GATC	4 cut(s)	436, 473, 934, 1032
Sau96I	GGNCC	3 cut(s)	484, 689, 732
SchI	GAGTC	2 cut(s)	700, 849
ScrFI	CCNGG	5 cut(s)	43, 206, 507, 611, 721
SduI	GDGCHC	2 cut(s)	751, 892
SetI	ASST	9 cut(s)	168, 405, 505, 691, 737, 754, 803, 982, 1044
SfaNI	GCATC	1 cut(s)	632
SinI	GGWCC	3 cut(s)	484, 689, 732
SmiMI	CAYNNNNRTG	1 cut(s)	722
Sse9I	AATT	5 cut(s)	4, 245, 409, 543, 874
SsiI	CCGC	4 cut(s)	149, 261, 428, 1028
SspI	AATATT	1 cut(s)	181
SspMI	CTAG	4 cut(s)	326, 479, 534, 944
StyD4I	CCNGG	5 cut(s)	41, 204, 505, 609, 719
StyI	CCWWGG	2 cut(s)	343, 519
TaiI	ACGT	1 cut(s)	1044
TasI	AATT	5 cut(s)	4, 245, 409, 543, 874
TatI	WGTACW	2 cut(s)	141, 459
TfiI	GAWTC	2 cut(s)	339, 592
Tru1I	TTAA	5 cut(s)	53, 318, 380, 903, 926
Tru9I	TTAA	5 cut(s)	53, 318, 380, 903, 926
TscAI	CASTG	1 cut(s)	1042
TseFI	GTSAC	1 cut(s)	1037
TseI	GCWGC	5 cut(s)	129, 548, 557, 992, 1016
Tsp45I	GTSAC	1 cut(s)	1037
TspDTI	ATGAA	2 cut(s)	17, 554
TspGWI	ACGGA	1 cut(s)	850
TspRI	CASTG	1 cut(s)	1042
VneI	GTGCAC	1 cut(s)	747
VpaK11BI	GGWCC	3 cut(s)	484, 689, 732
VspI	ATTAAT	1 cut(s)	926
XapI	RAATTY	1 cut(s)	874
XceI	RCATGY	1 cut(s)	25
XcmI	CCANNNNNNNNNTGG	2 cut(s)	634, 724
XmnI	GAANNNNTTC	3 cut(s)	8, 181, 338
XspI	CTAG	4 cut(s)	326, 479, 534, 944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.