Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0016480

Physical Location & Seq

Genomic Coordinates Reverse (-)

33852812 .. 33855669

Gene Structure 2858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG259400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGATGAGTTGTTTCCGATGTTGCATGTCTGAAGAGAAAATCGCTAGGAAGTCATTGAAAAAGAGCATAAAGGAATACCATGACACAAAAACCTTGAACTCATTTGCTAACATCTCCTTCAAAACTGATAGCAGCAGGAGAAAGTATATTACCGATGAAATAGCAAAGATTGGCAAAGGAAATATTTCTGCTCGGATTTTTACTTACCGTGAACTATGTGTTGCAACTCAAAATTTTCATCCTGAATATTTGCTTGGCGAAGGTGGTTTTGGAAGAGTTTACAAAGGCCACCTTGAATGCACAAACCAAGTTGTTGCTGTTAAGCAATTAGACAGGAATGGATTCCAAGGAAATAGAGAATTTCTTGTAGAAGTTTTGATCTTGAGCCTTCTTCATGCTCCTAACCTTGTCAATTTGGTGGGATATTGCGCCGATGGTGATCAAAGAATTTTGGTGTATGAGTACATGGCCAATGGATCCCTAGAAGATCATCTTCTTGATTTACCTCCAGGCAAAAAACCCTTGGATTGGGAAACTAGGATCAAAATAGCTACTGGAGCAGCAAAAGGACTTGAATATCTACATGAACAAGCAAATCCCCCTGTCATATACCGCGATTTCAAAGCTTCCAACATACTGTTAGATGAAAACTTCAATCCGAAACTCTCTGATTTTGGTCTAGCAAAGCTTGGTCCAACTGGGGATAAGAGTCATGTGTCGACCAGGGTTATGGGAACCTATGGATATTGTGCTCCTGAATATGCTCTCACTGGCCAATTGACAACAAAATCCGACATTTATAGCTTTGGAGTTGTGTTTTTGGAGATAATCACAGGGAGGAGAGTTATAGACAACAACAGACCAACTGAAGAGCAGAATTTGGTTACTTGGGCACAACCATTGTTTAAAGACAGAAGAAAATTTGTATTGATGGCAGACCCATTGCTACAAGGGAAATACCCCATAAAAGGACTTTACCAAGCACTTGCAGTTGCAGCTATGTGTCTCCAAGAGGAAGCTGCAACTCGGCCTCTGATCAGCGATGTTGTAACAGCTTTAGAATTTTTATCAGTAGATAACCTTGGTGAAGGGGGTAATGAAAATATGGAGAATGACGGTGCAGATGAAGGTACTAAAGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042579 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

381

Amino Acids

42.65

Weight (kDa)

5.91

Isoelectric Point (pI)

29.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	82 - 296	2.9e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	84 - 287	1.2e-43	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20530 AT3G20530
fragaria_vesca	FvH4_3g22260
malus_domestica	MD03G1206400.v1.1 MD11G1221800.v1.1
prunus_persica	Prupe.4G209600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0038331
rosa_laevigata	RLG00000033847
rosa_multiflora	Rmu_sc0003632.1_g000006
rosa_rugosa	Rorug05G0172000
rosa_samantha	Rh5AG259400 Rh5CG295500 Rh5DG272200
rosa_wichuraiana	Rw5G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	719
AccII	CGCG	1 cut(s)	615
AciI	CCGC	1 cut(s)	613
AclWI	GGATC	3 cut(s)	471, 484, 548
AcoI	YGGCCR	2 cut(s)	468, 772
AcsI	RAATTY	6 cut(s)	232, 359, 447, 877, 920, 1061
AcuI	CTGAAG	2 cut(s)	51, 888
AfaI	GTAC	2 cut(s)	464, 1132
AfiI	CCNNNNNNNGG	2 cut(s)	528, 968
AgsI	TTSAA	7 cut(s)	58, 97, 121, 296, 575, 622, 655
AjnI	CCWGG	2 cut(s)	508, 722
AjuI	GAANNNNNNNTTGG	4 cut(s)	237, 252, 269, 284
AluBI	AGCT	7 cut(s)	551, 626, 688, 804, 998, 1019, 1055
AluI	AGCT	7 cut(s)	551, 626, 688, 804, 998, 1019, 1055
Alw21I	GWGCWC	1 cut(s)	754
Alw26I	GTCTC	1 cut(s)	1010
AlwI	GGATC	3 cut(s)	471, 484, 548
AoxI	GGCC	4 cut(s)	286, 468, 772, 1028
ApeKI	GCWGC	4 cut(s)	132, 560, 995, 1019
ApoI	RAATTY	6 cut(s)	232, 359, 447, 877, 920, 1061
Asp700I	GAANNNNTTC	2 cut(s)	184, 341
AspLEI	GCGC	1 cut(s)	431
AspS9I	GGNCC	1 cut(s)	692
AsuHPI	GGTGA	2 cut(s)	449, 1097
AvaII	GGWCC	1 cut(s)	692
BaeGI	GKGCMC	1 cut(s)	895
BalI	TGGCCA	2 cut(s)	470, 774
BamHI	GGATCC	1 cut(s)	476
Bbv12I	GWGCWC	1 cut(s)	754
BbvI	GCAGC	4 cut(s)	144, 572, 1006, 1007
BccI	CCATC	2 cut(s)	428, 925
BciT130I	CCWGG	2 cut(s)	510, 724
BclI	TGATCA	2 cut(s)	439, 1035
BcoDI	GTCTC	1 cut(s)	1010
BfaI	CTAG	4 cut(s)	45, 482, 537, 680
BisI	GCNGC	4 cut(s)	133, 561, 996, 1020
BlsI	GCNGC	4 cut(s)	134, 562, 997, 1021
Bme1390I	CCNGG	2 cut(s)	510, 724
Bme18I	GGWCC	1 cut(s)	692
BmgT120I	GGNCC	1 cut(s)	692
BmiI	GGNNCC	2 cut(s)	478, 736
BmrFI	CCNGG	2 cut(s)	510, 724
BmrI	ACTGGG	1 cut(s)	708
BmuI	ACTGGG	1 cut(s)	708
BpmI	CTGGAG	2 cut(s)	492, 576
BpuEI	CTTGAG	1 cut(s)	403
BsaBI	GATNNNNATC	1 cut(s)	438
BsaJI	CCNNGG	4 cut(s)	346, 522, 723, 1081
Bsc4I	CCNNNNNNNGG	2 cut(s)	528, 968
Bse1I	ACTGG	3 cut(s)	559, 703, 775
Bse3DI	GCAATG	1 cut(s)	941
Bse8I	GATNNNNATC	1 cut(s)	438
BseBI	CCWGG	2 cut(s)	510, 724
BseDI	CCNNGG	4 cut(s)	346, 522, 723, 1081
BseGI	GGATG	1 cut(s)	238
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	2 cut(s)	528, 968
BseMI	GCAATG	1 cut(s)	941
BseNI	ACTGG	3 cut(s)	559, 703, 775
BseRI	GAGGAG	1 cut(s)	853
BseSI	GKGCMC	1 cut(s)	895
BseXI	GCAGC	4 cut(s)	144, 572, 1006, 1007
BsgI	GTGCAG	1 cut(s)	1140
Bsh1236I	CGCG	1 cut(s)	615
BshFI	GGCC	4 cut(s)	288, 470, 774, 1030
BsiHKAI	GWGCWC	1 cut(s)	754
BslI	CCNNNNNNNGG	2 cut(s)	528, 968
BsmAI	GTCTC	1 cut(s)	1010
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	4 cut(s)	288, 470, 774, 1030
Bsp1286I	GDGCHC	2 cut(s)	754, 895
Bsp143I	GATC	6 cut(s)	378, 439, 476, 487, 540, 1035
BspACI	CCGC	1 cut(s)	613
BspANI	GGCC	4 cut(s)	288, 470, 774, 1030
BspFNI	CGCG	1 cut(s)	615
BspLI	GGNNCC	2 cut(s)	478, 736
BspPI	GGATC	3 cut(s)	471, 484, 548
BspQI	GCTCTTC	1 cut(s)	864
BsrDI	GCAATG	1 cut(s)	941
BsrI	ACTGG	3 cut(s)	559, 703, 775
BssECI	CCNNGG	4 cut(s)	346, 522, 723, 1081
BssMI	GATC	6 cut(s)	378, 439, 476, 487, 540, 1035
BssT1I	CCWWGG	3 cut(s)	346, 522, 1081
Bst2UI	CCWGG	2 cut(s)	510, 724
Bst4CI	ACNGT	3 cut(s)	209, 639, 1118
Bst6I	CTCTTC	3 cut(s)	27, 268, 864
BstF5I	GGATG	1 cut(s)	238
BstFNI	CGCG	1 cut(s)	615
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	6 cut(s)	381, 442, 479, 490, 543, 1038
BstMAI	GTCTC	1 cut(s)	1010
BstMBI	GATC	6 cut(s)	378, 439, 476, 487, 540, 1035
BstMWI	GCNNNNNNNGC	2 cut(s)	557, 995
BstNI	CCWGG	2 cut(s)	510, 724
BstNSI	RCATGY	1 cut(s)	28
BstSCI	CCNGG	2 cut(s)	508, 722
BstSLI	GKGCMC	1 cut(s)	895
BstUI	CGCG	1 cut(s)	615
BstV1I	GCAGC	4 cut(s)	144, 572, 1006, 1007
BstX2I	RGATCY	1 cut(s)	476
BstXI	CCANNNNNNTGG	1 cut(s)	730
BstYI	RGATCY	1 cut(s)	476
BsuRI	GGCC	4 cut(s)	288, 470, 774, 1030
BtgZI	GCGATG	1 cut(s)	1056
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	768
CfoI	GCGC	1 cut(s)	431
Cfr13I	GGNCC	1 cut(s)	692
Csp6I	GTAC	2 cut(s)	463, 1131
CviAII	CATG	6 cut(s)	25, 80, 395, 466, 584, 713
CviQI	GTAC	2 cut(s)	463, 1131
DpnI	GATC	6 cut(s)	380, 441, 478, 489, 542, 1037
DpnII	GATC	6 cut(s)	378, 439, 476, 487, 540, 1035
DraI	TTTAAA	1 cut(s)	907
EaeI	YGGCCR	2 cut(s)	468, 772
Eam1104I	CTCTTC	3 cut(s)	27, 268, 864
EarI	CTCTTC	3 cut(s)	27, 268, 864
Eco130I	CCWWGG	3 cut(s)	346, 522, 1081
Eco47I	GGWCC	1 cut(s)	692
Eco57I	CTGAAG	2 cut(s)	51, 888
EcoRII	CCWGG	2 cut(s)	508, 722
EcoT14I	CCWWGG	3 cut(s)	346, 522, 1081
ErhI	CCWWGG	3 cut(s)	346, 522, 1081
FaeI	CATG	6 cut(s)	28, 83, 398, 469, 587, 716
FalI	AAGNNNNNCTT	4 cut(s)	276, 308, 477, 509
FatI	CATG	6 cut(s)	24, 79, 394, 465, 583, 712
FbaI	TGATCA	2 cut(s)	439, 1035
FblI	GTMKAC	1 cut(s)	719
Fnu4HI	GCNGC	4 cut(s)	133, 561, 996, 1020
FokI	GGATG	1 cut(s)	225
Fsp4HI	GCNGC	4 cut(s)	133, 561, 996, 1020
FspBI	CTAG	4 cut(s)	45, 482, 537, 680
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	4 cut(s)	133, 561, 996, 1020
GsuI	CTGGAG	2 cut(s)	492, 576
HaeIII	GGCC	4 cut(s)	288, 470, 774, 1030
HhaI	GCGC	1 cut(s)	431
Hin1II	CATG	6 cut(s)	28, 83, 398, 469, 587, 716
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HincII	GTYRAC	1 cut(s)	720
HindII	GTYRAC	1 cut(s)	720
HindIII	AAGCTT	2 cut(s)	624, 686
HinfI	GANTC	2 cut(s)	342, 709
HphI	GGTGA	2 cut(s)	449, 1097
Hpy166II	GTNNAC	3 cut(s)	212, 280, 720
Hpy188I	TCNGA	7 cut(s)	17, 31, 195, 660, 670, 793, 1035
Hpy188III	TCNNGA	4 cut(s)	242, 382, 497, 755
Hpy8I	GTNNAC	3 cut(s)	212, 280, 720
HpyAV	CCTTC	5 cut(s)	127, 254, 398, 1082, 1121
HpyCH4III	ACNGT	3 cut(s)	209, 639, 1118
HpyCH4V	TGCA	7 cut(s)	24, 224, 300, 989, 995, 1022, 1121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	557, 995
Hsp92II	CATG	6 cut(s)	28, 83, 398, 469, 587, 716
HspAI	GCGC	1 cut(s)	429
Ksp22I	TGATCA	2 cut(s)	439, 1035
Kzo9I	GATC	6 cut(s)	378, 439, 476, 487, 540, 1035
LguI	GCTCTTC	1 cut(s)	864
LmnI	GCTCC	3 cut(s)	403, 557, 757
Lsp1109I	GCAGC	4 cut(s)	144, 572, 1006, 1007
MaeI	CTAG	4 cut(s)	45, 482, 537, 680
MaeIII	GTNAC	2 cut(s)	883, 1048
MalI	GATC	6 cut(s)	380, 441, 478, 489, 542, 1037
MboI	GATC	6 cut(s)	378, 439, 476, 487, 540, 1035
MboII	GAAGA	7 cut(s)	44, 285, 383, 485, 497, 881, 927
MfeI	CAATTG	1 cut(s)	776
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	2 cut(s)	754, 895
MlsI	TGGCCA	2 cut(s)	470, 774
MluCI	AATT	9 cut(s)	232, 326, 359, 412, 447, 776, 877, 920, 1061
MluNI	TGGCCA	2 cut(s)	470, 774
MlyI	GAGTC	1 cut(s)	718
MmeI	TCCRAC	3 cut(s)	654, 719, 816
MnlI	CCTC	4 cut(s)	516, 831, 1006, 1041
Mox20I	TGGCCA	2 cut(s)	470, 774
MroXI	GAANNNNTTC	2 cut(s)	184, 341
MscI	TGGCCA	2 cut(s)	470, 774
MseI	TTAA	2 cut(s)	321, 906
Msp20I	TGGCCA	2 cut(s)	470, 774
MspR9I	CCNGG	2 cut(s)	510, 724
MunI	CAATTG	1 cut(s)	776
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	2 cut(s)	510, 724
MvnI	CGCG	1 cut(s)	615
MwoI	GCNNNNNNNGC	2 cut(s)	557, 995
NdeII	GATC	6 cut(s)	378, 439, 476, 487, 540, 1035
NlaIII	CATG	6 cut(s)	28, 83, 398, 469, 587, 716
NlaIV	GGNNCC	2 cut(s)	478, 736
NmeAIII	GCCGAG	1 cut(s)	1006
NspI	RCATGY	1 cut(s)	28
PciSI	GCTCTTC	1 cut(s)	864
PctI	GAATGC	1 cut(s)	302
PdmI	GAANNNNTTC	2 cut(s)	184, 341
PfeI	GAWTC	1 cut(s)	342
PkrI	GCNGC	4 cut(s)	134, 562, 997, 1021
PleI	GAGTC	1 cut(s)	717
PpsI	GAGTC	1 cut(s)	717
Psp6I	CCWGG	2 cut(s)	508, 722
PspGI	CCWGG	2 cut(s)	508, 722
PspN4I	GGNNCC	2 cut(s)	478, 736
PspPI	GGNCC	1 cut(s)	692
PsuI	RGATCY	1 cut(s)	476
RsaI	GTAC	2 cut(s)	464, 1132
RsaNI	GTAC	2 cut(s)	463, 1131
SalI	GTCGAC	1 cut(s)	718
SapI	GCTCTTC	1 cut(s)	864
SaqAI	TTAA	2 cut(s)	321, 906
SatI	GCNGC	4 cut(s)	133, 561, 996, 1020
Sau3AI	GATC	6 cut(s)	378, 439, 476, 487, 540, 1035
Sau96I	GGNCC	1 cut(s)	692
SchI	GAGTC	1 cut(s)	718
ScrFI	CCNGG	2 cut(s)	510, 724
SduI	GDGCHC	2 cut(s)	754, 895
SinI	GGWCC	1 cut(s)	692
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
Sse9I	AATT	9 cut(s)	232, 326, 359, 412, 447, 776, 877, 920, 1061
SsiI	CCGC	1 cut(s)	613
SspI	AATATT	2 cut(s)	184, 248
SspMI	CTAG	4 cut(s)	45, 482, 537, 680
StyD4I	CCNGG	2 cut(s)	508, 722
StyI	CCWWGG	3 cut(s)	346, 522, 1081
TaaI	ACNGT	3 cut(s)	209, 639, 1118
TaqI	TCGA	1 cut(s)	719
TasI	AATT	9 cut(s)	232, 326, 359, 412, 447, 776, 877, 920, 1061
TatI	WGTACW	1 cut(s)	462
TfiI	GAWTC	1 cut(s)	342
Tru1I	TTAA	2 cut(s)	321, 906
Tru9I	TTAA	2 cut(s)	321, 906
TscAI	CASTG	1 cut(s)	775
TseI	GCWGC	4 cut(s)	132, 560, 995, 1019
TspDTI	ATGAA	7 cut(s)	171, 227, 383, 600, 660, 1113, 1140
TspRI	CASTG	1 cut(s)	775
VpaK11BI	GGWCC	1 cut(s)	692
XapI	RAATTY	6 cut(s)	232, 359, 447, 877, 920, 1061
XceI	RCATGY	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	719
XmnI	GAANNNNTTC	2 cut(s)	184, 341
XspI	CTAG	4 cut(s)	45, 482, 537, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.