Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003632.1

Orthogroup ID

OG0016480

Physical Location & Seq

Genomic Coordinates Reverse (-)

16160 .. 19920

Gene Structure 3761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003632.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

atgatgagttgtttccgatgttgcatgtctgaagagaaaatcgctaggaagtcattgaaaaagagcataaaggaataccatgacacaaaaaccttgaactcatttgctaacatctccttcaaaactgatagcagcaggagaaagtatattaccgatgaaatagcaaagattggcaaaggaaatatttctgctcggatttttacttaccgtgaactatgtgttgcaactcaaaattttcatcctgaatatttgcttggcgaaggtggttttggaagagtttacaaaggccaccttgaatgcacaaaccaagttgttgctgttaagcaattagacaggaatggattccaaggaaacagagaatttcttgtagaagttttgatcttgagccttcttcatgctcctaaccttgtcaatttggtgggatattgcgccgatggtgatcaaagaattttggtgtatgagtacatggccaatggatccctagaagatcatcttcttgatttacctccaggcaaaaaacccttggattgggaaactaggatcaaaatagctactggagcagcaaaaggacttgaatatctacatgaacaagcaaatccccctgtcatataccgcgatttcaaagcttccaacatactgttagatgaaaacttcaatccgaaactctctgattttggtctagcaaagcttggtccaactggggataagagtcatgtgtcgaccagggttatgggaacctatggatattgtgctcctgaatatgctctcaccggccaattgacaacaaaatccgacatttatagctttggagttgtgtttttggagataatcactgggaggagagttatagacaacaacagaccaactgaagagcagaatttggttacttgggcacaaccattgtttaaagacagaagaaaatttgtattgatggcagacccattgctacaagggaaataccccataaaaggactttaccaagcacttgcagttgcagctatgtgtctccaagaggaagctgcaactcggcctctgatcagcgatgttgtaacagctttagaatttttatcagtagataaccttggtgaagggggtaatgaaaatatggagaatgacggtgcagatgaagccaaaccctcctactaccagcgagccccaacgccaccacgccgtctccacgcatcaaaactgcacctcgctgaattcctctgcagctgcaccgccttgacaagccgcaaacagcccctgcatcaagtggaagacctcaaacaggtccaaagcggagaccgcgacagatccctttcgggatcggcacctcctcgttcagatctgatcaaccacagcctaaaaagcagggtcgatgacagtagaaaccaccgccggaactccaagttccgttgctgcacctccgatgtcgtcacctcgatccgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042579 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

477

Amino Acids

53.55

Weight (kDa)

8.57

Isoelectric Point (pI)

36.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20530 AT3G20530
fragaria_vesca	FvH4_3g22260
malus_domestica	MD03G1206400.v1.1 MD11G1221800.v1.1
prunus_persica	Prupe.4G209600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0038331
rosa_laevigata	RLG00000033847
rosa_multiflora	Rmu_sc0003632.1_g000006
rosa_rugosa	Rorug05G0172000
rosa_samantha	Rh5AG259400 Rh5CG295500 Rh5DG272200
rosa_wichuraiana	Rw5G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1312
AccI	GTMKAC	1 cut(s)	719
AccII	CGCG	2 cut(s)	615, 1290
AciI	CCGC	6 cut(s)	613, 1221, 1234, 1281, 1288, 1378
AclWI	GGATC	6 cut(s)	471, 484, 548, 1290, 1315, 1420
AcoI	YGGCCR	2 cut(s)	468, 772
AcsI	RAATTY	7 cut(s)	232, 359, 447, 877, 920, 1061, 1202
AcuI	CTGAAG	2 cut(s)	51, 888
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	3 cut(s)	528, 968, 1270
AgsI	TTSAA	7 cut(s)	58, 97, 121, 296, 575, 622, 655
AjnI	CCWGG	2 cut(s)	508, 722
AjuI	GAANNNNNNNTTGG	4 cut(s)	237, 252, 269, 284
AluBI	AGCT	8 cut(s)	551, 626, 688, 804, 998, 1019, 1055, 1215
AluI	AGCT	8 cut(s)	551, 626, 688, 804, 998, 1019, 1055, 1215
Alw21I	GWGCWC	1 cut(s)	754
Alw26I	GTCTC	3 cut(s)	1010, 1178, 1278
AlwI	GGATC	6 cut(s)	471, 484, 548, 1290, 1315, 1420
AlwNI	CAGNNNCTG	1 cut(s)	1246
AoxI	GGCC	4 cut(s)	286, 468, 772, 1028
ApeKI	GCWGC	7 cut(s)	132, 560, 995, 1019, 1212, 1215, 1401
ApoI	RAATTY	7 cut(s)	232, 359, 447, 877, 920, 1061, 1202
Asp700I	GAANNNNTTC	2 cut(s)	184, 341
AspLEI	GCGC	1 cut(s)	431
AspS9I	GGNCC	2 cut(s)	692, 1273
AsuHPI	GGTGA	4 cut(s)	449, 760, 1097, 1411
AvaII	GGWCC	2 cut(s)	692, 1273
BaeGI	GKGCMC	1 cut(s)	895
BalI	TGGCCA	1 cut(s)	470
BamHI	GGATCC	1 cut(s)	476
BanI	GGYRCC	1 cut(s)	1312
BanII	GRGCYC	1 cut(s)	1156
BbsI	GAAGAC	1 cut(s)	1266
Bbv12I	GWGCWC	1 cut(s)	754
BbvI	GCAGC	7 cut(s)	144, 572, 1006, 1007, 1202, 1224, 1388
BccI	CCATC	2 cut(s)	428, 925
BceAI	ACGGC	1 cut(s)	1155
BciT130I	CCWGG	2 cut(s)	510, 724
BclI	TGATCA	3 cut(s)	439, 1035, 1332
BcoDI	GTCTC	3 cut(s)	1010, 1178, 1278
BfaI	CTAG	4 cut(s)	45, 482, 537, 680
BfmI	CTRYAG	1 cut(s)	1210
BglII	AGATCT	1 cut(s)	1327
BisI	GCNGC	8 cut(s)	133, 561, 996, 1020, 1213, 1216, 1234, 1402
BlsI	GCNGC	8 cut(s)	134, 562, 997, 1021, 1214, 1217, 1235, 1403
Bme1390I	CCNGG	2 cut(s)	510, 724
Bme18I	GGWCC	2 cut(s)	692, 1273
BmgT120I	GGNCC	2 cut(s)	692, 1273
BmiI	GGNNCC	3 cut(s)	478, 736, 1314
BmrFI	CCNGG	2 cut(s)	510, 724
BmrI	ACTGGG	2 cut(s)	708, 843
BmsI	GCATC	2 cut(s)	1190, 1258
BmuI	ACTGGG	2 cut(s)	708, 843
BpiI	GAAGAC	1 cut(s)	1266
BpmI	CTGGAG	2 cut(s)	492, 576
BpuEI	CTTGAG	1 cut(s)	403
BsaBI	GATNNNNATC	1 cut(s)	438
BsaI	GGTCTC	1 cut(s)	1278
BsaJI	CCNNGG	4 cut(s)	346, 522, 723, 1081
BsaXI	ACNNNNNCTCC	2 cut(s)	1158, 1188
Bsc4I	CCNNNNNNNGG	3 cut(s)	528, 968, 1270
Bse118I	RCCGGY	1 cut(s)	770
Bse1I	ACTGG	3 cut(s)	559, 703, 838
Bse3DI	GCAATG	1 cut(s)	941
Bse8I	GATNNNNATC	1 cut(s)	438
BseBI	CCWGG	2 cut(s)	510, 724
BseDI	CCNNGG	4 cut(s)	346, 522, 723, 1081
BseGI	GGATG	1 cut(s)	238
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	3 cut(s)	528, 968, 1270
BseMI	GCAATG	1 cut(s)	941
BseNI	ACTGG	3 cut(s)	559, 703, 838
BseRI	GAGGAG	2 cut(s)	853, 1308
BseSI	GKGCMC	1 cut(s)	895
BseXI	GCAGC	7 cut(s)	144, 572, 1006, 1007, 1202, 1224, 1388
BsgI	GTGCAG	4 cut(s)	1140, 1175, 1201, 1387
Bsh1236I	CGCG	2 cut(s)	615, 1290
BshFI	GGCC	4 cut(s)	288, 470, 774, 1030
BshNI	GGYRCC	1 cut(s)	1312
BsiHKAI	GWGCWC	1 cut(s)	754
BsiSI	CCGG	2 cut(s)	771, 1381
BslI	CCNNNNNNNGG	3 cut(s)	528, 968, 1270
BsmAI	GTCTC	3 cut(s)	1010, 1178, 1278
BsmBI	CGTCTC	1 cut(s)	1178
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	4 cut(s)	288, 470, 774, 1030
Bso31I	GGTCTC	1 cut(s)	1278
Bsp1286I	GDGCHC	3 cut(s)	754, 895, 1156
BspACI	CCGC	6 cut(s)	613, 1221, 1234, 1281, 1288, 1378
BspANI	GGCC	4 cut(s)	288, 470, 774, 1030
BspFNI	CGCG	2 cut(s)	615, 1290
BspLI	GGNNCC	3 cut(s)	478, 736, 1314
BspMAI	CTGCAG	1 cut(s)	1214
BspPI	GGATC	6 cut(s)	471, 484, 548, 1290, 1315, 1420
BspQI	GCTCTTC	1 cut(s)	864
BspT107I	GGYRCC	1 cut(s)	1312
BspTNI	GGTCTC	1 cut(s)	1278
BsrDI	GCAATG	1 cut(s)	941
BsrFI	RCCGGY	1 cut(s)	770
BsrI	ACTGG	3 cut(s)	559, 703, 838
BssAI	RCCGGY	1 cut(s)	770
BssECI	CCNNGG	4 cut(s)	346, 522, 723, 1081
BssT1I	CCWWGG	3 cut(s)	346, 522, 1081
Bst2UI	CCWGG	2 cut(s)	510, 724
Bst4CI	ACNGT	4 cut(s)	209, 639, 1118, 1367
Bst6I	CTCTTC	3 cut(s)	27, 268, 864
BstC8I	GCNNGC	1 cut(s)	1152
BstENI	CCTNNNNNAGG	1 cut(s)	1268
BstF5I	GGATG	1 cut(s)	238
BstFNI	CGCG	2 cut(s)	615, 1290
BstHHI	GCGC	1 cut(s)	431
BstMAI	GTCTC	3 cut(s)	1010, 1178, 1278
BstMWI	GCNNNNNNNGC	5 cut(s)	557, 995, 1127, 1287, 1350
BstNI	CCWGG	2 cut(s)	510, 724
BstNSI	RCATGY	1 cut(s)	28
BstSCI	CCNGG	2 cut(s)	508, 722
BstSFI	CTRYAG	1 cut(s)	1210
BstSLI	GKGCMC	1 cut(s)	895
BstUI	CGCG	2 cut(s)	615, 1290
BstV1I	GCAGC	7 cut(s)	144, 572, 1006, 1007, 1202, 1224, 1388
BstV2I	GAAGAC	1 cut(s)	1266
BstX2I	RGATCY	3 cut(s)	476, 1295, 1327
BstXI	CCANNNNNNTGG	1 cut(s)	730
BstYI	RGATCY	3 cut(s)	476, 1295, 1327
BsuRI	GGCC	4 cut(s)	288, 470, 774, 1030
BtgZI	GCGATG	1 cut(s)	1056
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	831
Cac8I	GCNNGC	1 cut(s)	1152
CaiI	CAGNNNCTG	1 cut(s)	1246
CfoI	GCGC	1 cut(s)	431
Cfr10I	RCCGGY	1 cut(s)	770
Cfr13I	GGNCC	2 cut(s)	692, 1273
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	6 cut(s)	25, 80, 395, 466, 584, 713
CviQI	GTAC	1 cut(s)	463
DraI	TTTAAA	1 cut(s)	907
EaeI	YGGCCR	2 cut(s)	468, 772
Eam1104I	CTCTTC	3 cut(s)	27, 268, 864
EarI	CTCTTC	3 cut(s)	27, 268, 864
Eco130I	CCWWGG	3 cut(s)	346, 522, 1081
Eco24I	GRGCYC	1 cut(s)	1156
Eco31I	GGTCTC	1 cut(s)	1278
Eco47I	GGWCC	2 cut(s)	692, 1273
Eco57I	CTGAAG	2 cut(s)	51, 888
EcoNI	CCTNNNNNAGG	1 cut(s)	1268
EcoRI	GAATTC	1 cut(s)	1202
EcoRII	CCWGG	2 cut(s)	508, 722
EcoT14I	CCWWGG	3 cut(s)	346, 522, 1081
EcoT38I	GRGCYC	1 cut(s)	1156
ErhI	CCWWGG	3 cut(s)	346, 522, 1081
Esp3I	CGTCTC	1 cut(s)	1178
FaeI	CATG	6 cut(s)	28, 83, 398, 469, 587, 716
FalI	AAGNNNNNCTT	4 cut(s)	276, 308, 477, 509
FatI	CATG	6 cut(s)	24, 79, 394, 465, 583, 712
FbaI	TGATCA	3 cut(s)	439, 1035, 1332
FblI	GTMKAC	1 cut(s)	719
Fnu4HI	GCNGC	8 cut(s)	133, 561, 996, 1020, 1213, 1216, 1234, 1402
FokI	GGATG	1 cut(s)	225
FriOI	GRGCYC	1 cut(s)	1156
Fsp4HI	GCNGC	8 cut(s)	133, 561, 996, 1020, 1213, 1216, 1234, 1402
FspBI	CTAG	4 cut(s)	45, 482, 537, 680
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	8 cut(s)	133, 561, 996, 1020, 1213, 1216, 1234, 1402
GsuI	CTGGAG	2 cut(s)	492, 576
HaeIII	GGCC	4 cut(s)	288, 470, 774, 1030
HapII	CCGG	2 cut(s)	771, 1381
HhaI	GCGC	1 cut(s)	431
Hin1II	CATG	6 cut(s)	28, 83, 398, 469, 587, 716
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HincII	GTYRAC	1 cut(s)	720
HindII	GTYRAC	1 cut(s)	720
HindIII	AAGCTT	2 cut(s)	624, 686
HinfI	GANTC	2 cut(s)	342, 709
HpaII	CCGG	2 cut(s)	771, 1381
HphI	GGTGA	4 cut(s)	449, 760, 1097, 1411
Hpy166II	GTNNAC	3 cut(s)	212, 280, 720
Hpy188III	TCNNGA	5 cut(s)	242, 382, 497, 755, 1305
Hpy8I	GTNNAC	3 cut(s)	212, 280, 720
HpyAV	CCTTC	4 cut(s)	127, 254, 398, 1082
HpyCH4III	ACNGT	4 cut(s)	209, 639, 1118, 1367
HpyF10VI	GCNNNNNNNGC	5 cut(s)	557, 995, 1127, 1287, 1350
Hsp92II	CATG	6 cut(s)	28, 83, 398, 469, 587, 716
HspAI	GCGC	1 cut(s)	429
Ksp22I	TGATCA	3 cut(s)	439, 1035, 1332
LguI	GCTCTTC	1 cut(s)	864
LmnI	GCTCC	3 cut(s)	403, 557, 757
Lsp1109I	GCAGC	7 cut(s)	144, 572, 1006, 1007, 1202, 1224, 1388
LweI	GCATC	2 cut(s)	1190, 1258
MaeI	CTAG	4 cut(s)	45, 482, 537, 680
MaeIII	GTNAC	3 cut(s)	883, 1048, 1417
MboII	GAAGA	8 cut(s)	44, 285, 383, 485, 497, 881, 927, 1271
MfeI	CAATTG	1 cut(s)	776
MflI	RGATCY	3 cut(s)	476, 1295, 1327
MhlI	GDGCHC	3 cut(s)	754, 895, 1156
MlsI	TGGCCA	1 cut(s)	470
MluNI	TGGCCA	1 cut(s)	470
MlyI	GAGTC	1 cut(s)	718
MmeI	TCCRAC	3 cut(s)	654, 719, 816
Mox20I	TGGCCA	1 cut(s)	470
MroXI	GAANNNNTTC	2 cut(s)	184, 341
MscI	TGGCCA	1 cut(s)	470
MseI	TTAA	2 cut(s)	321, 906
Msp20I	TGGCCA	1 cut(s)	470
MspA1I	CMGCKG	1 cut(s)	1215
MspI	CCGG	2 cut(s)	771, 1381
MspR9I	CCNGG	2 cut(s)	510, 724
MunI	CAATTG	1 cut(s)	776
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	2 cut(s)	510, 724
MvnI	CGCG	2 cut(s)	615, 1290
MwoI	GCNNNNNNNGC	5 cut(s)	557, 995, 1127, 1287, 1350
NlaIII	CATG	6 cut(s)	28, 83, 398, 469, 587, 716
NlaIV	GGNNCC	3 cut(s)	478, 736, 1314
NmeAIII	GCCGAG	1 cut(s)	1006
NmuCI	GTSAC	1 cut(s)	1417
NspI	RCATGY	1 cut(s)	28
PciSI	GCTCTTC	1 cut(s)	864
PctI	GAATGC	1 cut(s)	302
PdmI	GAANNNNTTC	2 cut(s)	184, 341
PfeI	GAWTC	1 cut(s)	342
PkrI	GCNGC	8 cut(s)	134, 562, 997, 1021, 1214, 1217, 1235, 1403
PleI	GAGTC	1 cut(s)	717
PpsI	GAGTC	1 cut(s)	717
Psp6I	CCWGG	2 cut(s)	508, 722
PspGI	CCWGG	2 cut(s)	508, 722
PspN4I	GGNNCC	3 cut(s)	478, 736, 1314
PspPI	GGNCC	2 cut(s)	692, 1273
PstI	CTGCAG	1 cut(s)	1214
PstNI	CAGNNNCTG	1 cut(s)	1246
PsuI	RGATCY	3 cut(s)	476, 1295, 1327
PvuII	CAGCTG	1 cut(s)	1215
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
SalI	GTCGAC	1 cut(s)	718
SapI	GCTCTTC	1 cut(s)	864
SaqAI	TTAA	2 cut(s)	321, 906
SatI	GCNGC	8 cut(s)	133, 561, 996, 1020, 1213, 1216, 1234, 1402
Sau96I	GGNCC	2 cut(s)	692, 1273
SchI	GAGTC	1 cut(s)	718
ScrFI	CCNGG	2 cut(s)	510, 724
SduI	GDGCHC	3 cut(s)	754, 895, 1156
SfaNI	GCATC	2 cut(s)	1190, 1258
SfcI	CTRYAG	1 cut(s)	1210
SinI	GGWCC	2 cut(s)	692, 1273
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
SsiI	CCGC	6 cut(s)	613, 1221, 1234, 1281, 1288, 1378
SspI	AATATT	2 cut(s)	184, 248
SspMI	CTAG	4 cut(s)	45, 482, 537, 680
StyD4I	CCNGG	2 cut(s)	508, 722
StyI	CCWWGG	3 cut(s)	346, 522, 1081
TaaI	ACNGT	4 cut(s)	209, 639, 1118, 1367
TaqI	TCGA	3 cut(s)	719, 1359, 1424
TatI	WGTACW	1 cut(s)	462
TauI	GCSGC	1 cut(s)	1236
TfiI	GAWTC	1 cut(s)	342
Tru1I	TTAA	2 cut(s)	321, 906
Tru9I	TTAA	2 cut(s)	321, 906
TscAI	CASTG	1 cut(s)	838
TseFI	GTSAC	1 cut(s)	1417
TseI	GCWGC	7 cut(s)	132, 560, 995, 1019, 1212, 1215, 1401
Tsp45I	GTSAC	1 cut(s)	1417
TspDTI	ATGAA	7 cut(s)	171, 227, 383, 600, 660, 1113, 1140
TspGWI	ACGGA	1 cut(s)	1385
TspRI	CASTG	1 cut(s)	838
VpaK11BI	GGWCC	2 cut(s)	692, 1273
XagI	CCTNNNNNAGG	1 cut(s)	1268
XapI	RAATTY	7 cut(s)	232, 359, 447, 877, 920, 1061, 1202
XceI	RCATGY	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	719
XmnI	GAANNNNTTC	2 cut(s)	184, 341
XspI	CTAG	4 cut(s)	45, 482, 537, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.