Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0016480

Physical Location & Seq

Genomic Coordinates Forward (+)

16035875 .. 16040877

Gene Structure 5003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0172000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2535 bp

ATGATTTATAGGAGGAAGTTGTGTCCTAGAAATTTTGGCAGACTCTACAAAAACCCTGCCTTAAACCCTTTATTTCACAATTTCAATTCATACCCTAATCTCTGCACCAGAGAACTCAATAGTTATGGAGGAAGTTCCAGATTTTGGAGCTCTTTAGTGGGTTCCAACTTAATTTCTCCTAAATGTTCTGTACCATTAAAACCCAATTTCATTGGCAGCTCTGGGTTTTCAAGATTAAATCTTTCTGAAACGCCATTATCTGTTGGGTGTGCTTTTGTTAGAAATTACTCTTCTGGGAAGAACAGTGATGAGTGGACTGAGGAAATTGAGTATTTGGATGAATCAGGAAGTGTTATTTACACTGGGAAAGGTATAAGGTCTGTCGAGCCGGGGCTCGATGACCATGTGATGGTGGGTGGTTTGAAAAAGCCGCTTCTGAACGCCTCTGCGATTGCTAAGATTGTTGAGGTCGTGAAGAGGTGGAAATGGGGGCCTGAGTTGGAGACCCAATTGGACAAACTCCAATTTGTGCCAAACATGACTCACATCACTCAAGCATTGAAGGTGATTAATGATAGTGAAGGGTCTTTGAGTTTGTTTCGATGGGCTAAGAGGCAACCTTGGTATTTGCCGAGTGATGAGTGTTATGTCTTATTGTTTGATGGCCTGAATGAAAGTAGGGACTTTGATGGGATTCAATCATTATTTGATGAAATGGTGCAGGATTCGAGTAATAATGGAGTTTTATCATCTACTGCATATAATCGTGTCATTCAGTTTTTGGCTAAAGCGGATAAAATGGAGGTGTCATTTTGTTGTTTTAAGAAGATTCAAGATTCAGGATGTAAAGTTGATACTCAGACATATAATTCACTCATACTGCTGTTTTTAAATAAGGGTTTACCTTATAAGGCATTTGAGATATATGAAAGCATGCAAGCTGCAAATTGTTCGTTGGATGGATCAACGTATGAGTTGATGGTACCAAACTTGGCAAAGTCGGGCCGCCTTGATGCAGCATTTAAGCTCTTCCAAGAAATGAAAGAAAAGAATGTTAAACCCAGCTTTAATGTCTTTGCATCGCTTGTTGATTCAATGGGAAAAGCTGGGAGGTTGGACATGGCAATGAAGGTATACATGGAAATGCAGGGTTATGGTTTCAGGCCATCTGCTCCTATGTATGTATCCATGATTGAGTCAAATGTGAAGGCTGGGAAATTGGATGCTGCCCTTAGACTTTGGGATGAGATGAAGAAAGCAGGCTTTAGGCCTAACTTTGGGTTATATACAATGATTGTTGAGTCCCATGCAAAATCAGGAAAACTTGATATTGCAATGTCTGCCTTTACGGATATGGAGAAGGTTGGATTTCTACCCACTCCATCTACATATTCTTGTCTATTAGAAATGCATGCTGCCTCTGGACAAGTAGATCCTGCCATGAAGCTGTATAATTCGATGACCAATGCAGGTTTAAGACCAGGTATGAGTACTTACACTGGCCTTCTGATGCTCTTAGCTAATAAGAAGCTTGTGGATGTGGCTGCCAAAATTTTGCTTGAGATGAAGAGCATGGGATATTCTGTTGATGTGAGTGCTAGTGATGTACTGATGGTGTATATCAAGGATGGTTCTGTTGATGTTGCTCTGCGGTGGCTACGTTTCATGGGTTCATCAGGGATTCGAACAAATAATTTTATAGTTAGACAGCTGTTTGAGTCATGTATGAAGAGTGGCTTGTATGAGTCAGCAAAGCCTCTCCTTGAAACTTATGTGAACTCAGCTGCAAAAGTTGATCTGGTATTGTACGCATCCATTCTAGCACATCTTGTAAGATGCCAGGAAGAAGAGAATGAGAGGCATTTGATGTCAATACTTGGTACTACAAGACATAAGGCACATGCTTTTATGTGCGGACTCTTCACAGGCCCAGAACAGAGGGAACAACCGGTGTTATCTTTTGTGAGGGACTTTTTCCAAGGTATTGACTATGAGTTGGAAGAGGGGCCTGCTAGGTACTTTGTTAATGTTCTCCTCAATTACCTAGTTCTTATGGGGCAGATAAACCGAGCTCGATGTGTTTGGAAAGTCGCCTATGAGAATAAGCTTTTCCCAAAGGCAATAGTTTTTGATCAACAAATAGCTTGGTCCCTTGACGTCAGGAACTTATCAGTTGGAGCTGCTCTCATATCAGTTGTGCACACTCTCCATAGGTTCCGGAAACGAATGTTGTATTACGGTGTTGTCCCGAGACGTATTAAGTTGGTCACTGGACCAACTTTAAAGATTGTGATTGCACAAATTTTGAGCTCTGTGGAATCTCCATTTGAGGTTAGTAAAGTAGTGCTGAGGGCTCCAGGAGATGCTGTCATGGAGTGGTTTAAAAAACCCATAGTTCAACAGTTTCTTCTGAATGAGATTCCATCTAGGTCTGACATCCTCATGCATAAGCTGAACACTCTTTTTCCTAGTTCTGCGCCTGAACTAAGATCTCTGTCCCCTCCCAAAATGCTCATTGGAAGGAAAGGAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042579 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

844

Amino Acids

94.88

Weight (kDa)

9.03

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	251 - 293	6.3e-07	PPR repeat family
TPR_24	PF23276	256 - 381	1.5e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	258 - 406	2.1e-12	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	285 - 333	4.8e-07	PPR repeat family
PPR_3	PF13812	378 - 433	2.4e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	393 - 425	8.6e-06	PPR repeat family
PPR_3	PF13812	412 - 470	7.6e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	429 - 470	5.8e-06	PPR repeat family
TPR_24	PF23276	429 - 537	2.8e-09	Fungal tetratrico peptide repeats
PPR_2	PF13041	463 - 504	2.7e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20530 AT3G20530
fragaria_vesca	FvH4_3g22260
malus_domestica	MD03G1206400.v1.1 MD11G1221800.v1.1
prunus_persica	Prupe.4G209600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0038331
rosa_laevigata	RLG00000033847
rosa_multiflora	Rmu_sc0003632.1_g000006
rosa_rugosa	Rorug05G0172000
rosa_samantha	Rh5AG259400 Rh5CG295500 Rh5DG272200
rosa_wichuraiana	Rw5G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	909
AatII	GACGTC	1 cut(s)	2160
Acc36I	ACCTGC	1 cut(s)	1460
Acc65I	GGTACC	1 cut(s)	982
AccB1I	GGYRCC	1 cut(s)	982
AccB7I	CCANNNNNTGG	2 cut(s)	144, 409
AccI	GTMKAC	1 cut(s)	1134
AccIII	TCCGGA	1 cut(s)	2217
AciI	CCGC	5 cut(s)	431, 791, 1006, 1651, 1914
AclWI	GGATC	2 cut(s)	970, 1427
AcsI	RAATTY	3 cut(s)	31, 1551, 2301
AcyI	GRCGYC	1 cut(s)	2157
AfaI	GTAC	7 cut(s)	192, 984, 1492, 1608, 1808, 1882, 2018
AfiI	CCNNNNNNNGG	3 cut(s)	144, 409, 1277
AgeI	ACCGGT	1 cut(s)	1948
AgsI	TTSAA	9 cut(s)	85, 231, 424, 562, 698, 833, 1095, 1766, 2399
AjnI	CCWGG	3 cut(s)	1480, 1839, 2356
Alw21I	GWGCWC	4 cut(s)	152, 2074, 2202, 2312
Alw26I	GTCTC	2 cut(s)	497, 2245
Alw44I	GTGCAC	1 cut(s)	2198
AlwI	GGATC	2 cut(s)	970, 1427
Ama87I	CYCGRG	1 cut(s)	2248
Aor13HI	TCCGGA	1 cut(s)	2217
AoxI	GGCC	8 cut(s)	491, 664, 1003, 1163, 1268, 1501, 1927, 2006
ApaLI	GTGCAC	1 cut(s)	2198
ApeKI	GCWGC	8 cut(s)	216, 941, 1016, 1226, 1415, 1544, 1784, 2180
ApoI	RAATTY	3 cut(s)	31, 1551, 2301
AseI	ATTAAT	1 cut(s)	570
AsiGI	ACCGGT	1 cut(s)	1948
Asp718I	GGTACC	1 cut(s)	982
AspLEI	GCGC	1 cut(s)	2479
AspS9I	GGNCC	6 cut(s)	491, 1003, 1928, 2006, 2148, 2273
AsuC2I	CCSGG	1 cut(s)	390
AsuHPI	GGTGA	1 cut(s)	577
AsuII	TTCGAA	1 cut(s)	1684
AvaI	CYCGRG	1 cut(s)	2248
AvaII	GGWCC	2 cut(s)	2148, 2273
BaeGI	GKGCMC	1 cut(s)	2202
BanI	GGYRCC	1 cut(s)	982
BanII	GRGCYC	5 cut(s)	152, 396, 2074, 2312, 2356
Bbv12I	GWGCWC	4 cut(s)	152, 2074, 2202, 2312
BbvCI	CCTCAGC	1 cut(s)	2348
BbvI	GCAGC	8 cut(s)	228, 928, 1028, 1213, 1402, 1531, 1771, 2167
BcgI	CGANNNNNNTGC	2 cut(s)	933, 967
BciT130I	CCWGG	3 cut(s)	1482, 1841, 2358
BciVI	GTATCC	1 cut(s)	1195
BclI	TGATCA	1 cut(s)	2131
BcnI	CCSGG	1 cut(s)	390
BcoDI	GTCTC	2 cut(s)	497, 2245
BfaI	CTAG	7 cut(s)	27, 1599, 1820, 2013, 2045, 2427, 2469
BfuAI	ACCTGC	1 cut(s)	1460
BfuI	GTATCC	1 cut(s)	1195
BglII	AGATCT	1 cut(s)	2489
BmcAI	AGTACT	1 cut(s)	1492
Bme1390I	CCNGG	4 cut(s)	390, 1482, 1841, 2358
Bme18I	GGWCC	2 cut(s)	2148, 2273
BmeT110I	CYCGRG	1 cut(s)	2248
BmgT120I	GGNCC	6 cut(s)	491, 1003, 1928, 2006, 2148, 2273
BmiI	GGNNCC	7 cut(s)	163, 492, 984, 2007, 2150, 2216, 2355
BmrFI	CCNGG	4 cut(s)	390, 1482, 1841, 2358
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	7 cut(s)	1003, 1088, 1213, 1500, 1820, 1826, 2353
BmuI	ACTGGG	1 cut(s)	372
BplI	GAGNNNNNCTC	2 cut(s)	2169, 2201
BpmI	CTGGAG	1 cut(s)	2340
Bpu10I	CCTNAGC	1 cut(s)	2348
Bpu14I	TTCGAA	1 cut(s)	1684
BpuEI	CTTGAG	2 cut(s)	537, 1580
BpuMI	CCSGG	1 cut(s)	390
BsaHI	GRCGYC	1 cut(s)	2157
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	3 cut(s)	389, 620, 1978
BsaWI	WCCGGW	2 cut(s)	1948, 2217
BsaXI	ACNNNNNCTCC	2 cut(s)	2352, 2382
Bsc4I	CCNNNNNNNGG	3 cut(s)	144, 409, 1277
Bse118I	RCCGGY	1 cut(s)	1948
Bse1I	ACTGG	3 cut(s)	367, 1504, 2275
Bse3DI	GCAATG	2 cut(s)	1131, 1341
BseAI	TCCGGA	1 cut(s)	2217
BseBI	CCWGG	3 cut(s)	1482, 1841, 2358
BseDI	CCNNGG	3 cut(s)	389, 620, 1978
BseGI	GGATG	9 cut(s)	343, 848, 964, 1228, 1249, 1543, 1633, 1811, 2436
BseLI	CCNNNNNNNGG	3 cut(s)	144, 409, 1277
BseMI	GCAATG	2 cut(s)	1131, 1341
BseMII	CTCAG	5 cut(s)	309, 486, 872, 1794, 2339
BseNI	ACTGG	3 cut(s)	367, 1504, 2275
BseRI	GAGGAG	1 cut(s)	2024
BseSI	GKGCMC	1 cut(s)	2202
BseXI	GCAGC	8 cut(s)	228, 928, 1028, 1213, 1402, 1531, 1771, 2167
BseYI	CCCAGC	3 cut(s)	1061, 1106, 1211
BsgI	GTGCAG	2 cut(s)	88, 740
BshFI	GGCC	8 cut(s)	493, 666, 1005, 1165, 1270, 1503, 1929, 2008
BshNI	GGYRCC	1 cut(s)	982
BshTI	ACCGGT	1 cut(s)	1948
BsiHKAI	GWGCWC	4 cut(s)	152, 2074, 2202, 2312
BsiHKCI	CYCGRG	1 cut(s)	2248
BsiSI	CCGG	3 cut(s)	389, 1949, 2218
BslFI	GGGAC	6 cut(s)	695, 1288, 1982, 2134, 2231, 2482
BslI	CCNNNNNNNGG	3 cut(s)	144, 409, 1277
BsmAI	GTCTC	2 cut(s)	497, 2245
BsmBI	CGTCTC	1 cut(s)	2245
BsmFI	GGGAC	6 cut(s)	695, 1288, 1982, 2134, 2231, 2482
BsnI	GGCC	8 cut(s)	493, 666, 1005, 1165, 1270, 1503, 1929, 2008
Bso31I	GGTCTC	1 cut(s)	497
BsoBI	CYCGRG	1 cut(s)	2248
Bsp119I	TTCGAA	1 cut(s)	1684
Bsp1286I	GDGCHC	6 cut(s)	152, 396, 2074, 2202, 2312, 2356
Bsp13I	TCCGGA	1 cut(s)	2217
Bsp143I	GATC	5 cut(s)	962, 1432, 1795, 2131, 2489
BspACI	CCGC	5 cut(s)	431, 791, 1006, 1651, 1914
BspANI	GGCC	8 cut(s)	493, 666, 1005, 1165, 1270, 1503, 1929, 2008
BspCNI	CTCAG	5 cut(s)	310, 487, 871, 1793, 2340
BspEI	TCCGGA	1 cut(s)	2217
BspLI	GGNNCC	7 cut(s)	163, 492, 984, 2007, 2150, 2216, 2355
BspMI	ACCTGC	1 cut(s)	1460
BspPI	GGATC	2 cut(s)	970, 1427
BspQI	GCTCTTC	2 cut(s)	1034, 1562
BspT104I	TTCGAA	1 cut(s)	1684
BspT107I	GGYRCC	1 cut(s)	982
BspTNI	GGTCTC	1 cut(s)	497
BsrDI	GCAATG	2 cut(s)	1131, 1341
BsrFI	RCCGGY	1 cut(s)	1948
BsrI	ACTGG	3 cut(s)	367, 1504, 2275
BssAI	RCCGGY	1 cut(s)	1948
BssECI	CCNNGG	3 cut(s)	389, 620, 1978
BssMI	GATC	5 cut(s)	962, 1432, 1795, 2131, 2489
BssNAI	GTATAC	1 cut(s)	1135
BssNI	GRCGYC	1 cut(s)	2157
BssT1I	CCWWGG	2 cut(s)	620, 1978
Bst1107I	GTATAC	1 cut(s)	1135
Bst2UI	CCWGG	3 cut(s)	1482, 1841, 2358
Bst4CI	ACNGT	3 cut(s)	305, 2240, 2403
Bst6I	CTCTTC	8 cut(s)	295, 470, 1034, 1562, 1724, 1842, 1925, 1995
BstACI	GRCGYC	1 cut(s)	2157
BstAPI	GCANNNNNTGC	1 cut(s)	1340
BstBI	TTCGAA	1 cut(s)	1684
BstC8I	GCNNGC	5 cut(s)	935, 939, 1261, 1413, 2010
BstF5I	GGATG	9 cut(s)	343, 848, 964, 1228, 1249, 1543, 1633, 1811, 2436
BstHHI	GCGC	1 cut(s)	2479
BstKTI	GATC	5 cut(s)	965, 1435, 1798, 2134, 2492
BstMAI	GTCTC	2 cut(s)	497, 2245
BstMBI	GATC	5 cut(s)	962, 1432, 1795, 2131, 2489
BstMWI	GCNNNNNNNGC	1 cut(s)	1340
BstNI	CCWGG	3 cut(s)	1482, 1841, 2358
BstNSI	RCATGY	3 cut(s)	937, 1415, 1904
BstSCI	CCNGG	4 cut(s)	388, 1480, 1839, 2356
BstSLI	GKGCMC	1 cut(s)	2202
BstV1I	GCAGC	8 cut(s)	228, 928, 1028, 1213, 1402, 1531, 1771, 2167
BstX2I	RGATCY	2 cut(s)	1432, 2489
BstYI	RGATCY	2 cut(s)	1432, 2489
BstZ17I	GTATAC	1 cut(s)	1135
BsuI	GTATCC	1 cut(s)	1195
BsuRI	GGCC	8 cut(s)	493, 666, 1005, 1165, 1270, 1503, 1929, 2008
BtgZI	GCGATG	1 cut(s)	1065
BtsCI	GGATG	9 cut(s)	343, 848, 964, 1228, 1249, 1543, 1633, 1811, 2436
BtsIMutI	CAGTG	4 cut(s)	310, 360, 1497, 2268
BveI	ACCTGC	1 cut(s)	1460
Cac8I	GCNNGC	5 cut(s)	935, 939, 1261, 1413, 2010
CfoI	GCGC	1 cut(s)	2479
Cfr10I	RCCGGY	1 cut(s)	1948
Cfr13I	GGNCC	6 cut(s)	491, 1003, 1928, 2006, 2148, 2273
CsiI	ACCWGGT	1 cut(s)	1480
Csp6I	GTAC	7 cut(s)	191, 983, 1491, 1607, 1807, 1881, 2017
CspAI	ACCGGT	1 cut(s)	1948
CviQI	GTAC	7 cut(s)	191, 983, 1491, 1607, 1807, 1881, 2017
DpnI	GATC	5 cut(s)	964, 1434, 1797, 2133, 2491
DpnII	GATC	5 cut(s)	962, 1432, 1795, 2131, 2489
DraI	TTTAAA	3 cut(s)	891, 2283, 2383
Eam1104I	CTCTTC	8 cut(s)	295, 470, 1034, 1562, 1724, 1842, 1925, 1995
EarI	CTCTTC	8 cut(s)	295, 470, 1034, 1562, 1724, 1842, 1925, 1995
Ecl136II	GAGCTC	3 cut(s)	150, 2072, 2310
Eco130I	CCWWGG	2 cut(s)	620, 1978
Eco147I	AGGCCT	1 cut(s)	1270
Eco24I	GRGCYC	5 cut(s)	152, 396, 2074, 2312, 2356
Eco31I	GGTCTC	1 cut(s)	497
Eco47I	GGWCC	2 cut(s)	2148, 2273
Eco53kI	GAGCTC	3 cut(s)	150, 2072, 2310
Eco88I	CYCGRG	1 cut(s)	2248
EcoICRI	GAGCTC	3 cut(s)	150, 2072, 2310
EcoO109I	RGGNCCY	2 cut(s)	491, 2006
EcoRII	CCWGG	3 cut(s)	1480, 1839, 2356
EcoT14I	CCWWGG	2 cut(s)	620, 1978
EcoT22I	ATGCAT	2 cut(s)	1413, 2448
EcoT38I	GRGCYC	5 cut(s)	152, 396, 2074, 2312, 2356
ErhI	CCWWGG	2 cut(s)	620, 1978
Esp3I	CGTCTC	1 cut(s)	2245
FalI	AAGNNNNNCTT	2 cut(s)	1721, 1753
FaqI	GGGAC	6 cut(s)	695, 1288, 1982, 2134, 2231, 2482
FbaI	TGATCA	1 cut(s)	2131
FblI	GTMKAC	1 cut(s)	1134
FokI	GGATG	9 cut(s)	350, 855, 971, 1235, 1256, 1550, 1640, 1798, 2423
FriOI	GRGCYC	5 cut(s)	152, 396, 2074, 2312, 2356
FspBI	CTAG	7 cut(s)	27, 1599, 1820, 2013, 2045, 2427, 2469
GlaI	GCGC	1 cut(s)	2478
GsaI	CCCAGC	3 cut(s)	1065, 1110, 1215
GsuI	CTGGAG	1 cut(s)	2340
HaeIII	GGCC	8 cut(s)	493, 666, 1005, 1165, 1270, 1503, 1929, 2008
HapII	CCGG	3 cut(s)	389, 1949, 2218
HhaI	GCGC	1 cut(s)	2479
Hin1I	GRCGYC	1 cut(s)	2157
Hin6I	GCGC	1 cut(s)	2477
HinP1I	GCGC	1 cut(s)	2477
HindIII	AAGCTT	2 cut(s)	1529, 2105
HpaII	CCGG	3 cut(s)	389, 1949, 2218
HphI	GGTGA	1 cut(s)	577
Hpy166II	GTNNAC	5 cut(s)	315, 902, 1135, 1777, 2200
Hpy188I	TCNGA	6 cut(s)	247, 438, 861, 1509, 2412, 2434
Hpy8I	GTNNAC	5 cut(s)	315, 902, 1135, 1777, 2200
HpyAV	CCTTC	7 cut(s)	556, 575, 1123, 1201, 1354, 1514, 2514
HpyCH4III	ACNGT	3 cut(s)	305, 2240, 2403
HpyCH4IV	ACGT	4 cut(s)	968, 1660, 2157, 2254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1340
HpySE526I	ACGT	4 cut(s)	968, 1660, 2157, 2254
Hsp92I	GRCGYC	1 cut(s)	2157
HspAI	GCGC	1 cut(s)	2477
Kpn2I	TCCGGA	1 cut(s)	2217
KpnI	GGTACC	1 cut(s)	986
Ksp22I	TGATCA	1 cut(s)	2131
Kzo9I	GATC	5 cut(s)	962, 1432, 1795, 2131, 2489
LguI	GCTCTTC	2 cut(s)	1034, 1562
LmnI	GCTCC	4 cut(s)	147, 1177, 2177, 2359
Lsp1109I	GCAGC	8 cut(s)	228, 928, 1028, 1213, 1402, 1531, 1771, 2167
LweI	GCATC	7 cut(s)	1003, 1088, 1213, 1500, 1820, 1826, 2353
MabI	ACCWGGT	1 cut(s)	1480
MaeI	CTAG	7 cut(s)	27, 1599, 1820, 2013, 2045, 2427, 2469
MaeII	ACGT	4 cut(s)	968, 1660, 2157, 2254
MaeIII	GTNAC	1 cut(s)	2266
MalI	GATC	5 cut(s)	964, 1434, 1797, 2133, 2491
MboI	GATC	5 cut(s)	962, 1432, 1795, 2131, 2489
MfeI	CAATTG	1 cut(s)	509
MflI	RGATCY	2 cut(s)	1432, 2489
MhlI	GDGCHC	6 cut(s)	152, 396, 2074, 2202, 2312, 2356
MlyI	GAGTC	7 cut(s)	36, 535, 1205, 1310, 1727, 1754, 1911
MmeI	TCCRAC	7 cut(s)	189, 480, 936, 1095, 1345, 1977, 2155
Mph1103I	ATGCAT	2 cut(s)	1413, 2448
MroI	TCCGGA	1 cut(s)	2217
MslI	CAYNNNNRTG	3 cut(s)	1124, 1142, 2441
MspA1I	CMGCKG	2 cut(s)	1711, 1784
MspI	CCGG	3 cut(s)	389, 1949, 2218
MspR9I	CCNGG	4 cut(s)	390, 1482, 1841, 2358
MunI	CAATTG	1 cut(s)	509
MvaI	CCWGG	3 cut(s)	1482, 1841, 2358
MwoI	GCNNNNNNNGC	1 cut(s)	1340
NciI	CCSGG	1 cut(s)	390
NdeII	GATC	5 cut(s)	962, 1432, 1795, 2131, 2489
NlaIV	GGNNCC	7 cut(s)	163, 492, 984, 2007, 2150, 2216, 2355
NmeAIII	GCCGAG	1 cut(s)	657
NmuCI	GTSAC	1 cut(s)	2266
NsiI	ATGCAT	2 cut(s)	1413, 2448
NspI	RCATGY	3 cut(s)	937, 1415, 1904
NspV	TTCGAA	1 cut(s)	1684
PaeI	GCATGC	2 cut(s)	937, 1415
PceI	AGGCCT	1 cut(s)	1270
PciSI	GCTCTTC	2 cut(s)	1034, 1562
PfeI	GAWTC	9 cut(s)	341, 694, 725, 829, 836, 1091, 1681, 2318, 2419
PflMI	CCANNNNNTGG	2 cut(s)	144, 409
PfoI	TCCNGGA	1 cut(s)	2356
PinAI	ACCGGT	1 cut(s)	1948
PleI	GAGTC	7 cut(s)	36, 535, 1204, 1309, 1726, 1753, 1911
PpsI	GAGTC	7 cut(s)	36, 535, 1204, 1309, 1726, 1753, 1911
PshBI	ATTAAT	1 cut(s)	570
PsiI	TTATAA	1 cut(s)	909
Psp124BI	GAGCTC	3 cut(s)	152, 2074, 2312
Psp6I	CCWGG	3 cut(s)	1480, 1839, 2356
PspFI	CCCAGC	3 cut(s)	1061, 1106, 1211
PspGI	CCWGG	3 cut(s)	1480, 1839, 2356
PspN4I	GGNNCC	7 cut(s)	163, 492, 984, 2007, 2150, 2216, 2355
PspPI	GGNCC	6 cut(s)	491, 1003, 1928, 2006, 2148, 2273
PsuI	RGATCY	2 cut(s)	1432, 2489
PvuII	CAGCTG	2 cut(s)	1711, 1784
RsaI	GTAC	7 cut(s)	192, 984, 1492, 1608, 1808, 1882, 2018
RsaNI	GTAC	7 cut(s)	191, 983, 1491, 1607, 1807, 1881, 2017
RseI	CAYNNNNRTG	3 cut(s)	1124, 1142, 2441
SacI	GAGCTC	3 cut(s)	152, 2074, 2312
SapI	GCTCTTC	2 cut(s)	1034, 1562
Sau3AI	GATC	5 cut(s)	962, 1432, 1795, 2131, 2489
Sau96I	GGNCC	6 cut(s)	491, 1003, 1928, 2006, 2148, 2273
ScaI	AGTACT	1 cut(s)	1492
SchI	GAGTC	7 cut(s)	36, 535, 1205, 1310, 1727, 1754, 1911
ScrFI	CCNGG	4 cut(s)	390, 1482, 1841, 2358
SduI	GDGCHC	6 cut(s)	152, 396, 2074, 2202, 2312, 2356
SexAI	ACCWGGT	1 cut(s)	1480
SfaNI	GCATC	7 cut(s)	1003, 1088, 1213, 1500, 1820, 1826, 2353
SfuI	TTCGAA	1 cut(s)	1684
SinI	GGWCC	2 cut(s)	2148, 2273
SmiMI	CAYNNNNRTG	3 cut(s)	1124, 1142, 2441
SmlI	CTYRAG	2 cut(s)	552, 1559
SmoI	CTYRAG	2 cut(s)	552, 1559
SphI	GCATGC	2 cut(s)	937, 1415
SseBI	AGGCCT	1 cut(s)	1270
SsiI	CCGC	5 cut(s)	431, 791, 1006, 1651, 1914
SspMI	CTAG	7 cut(s)	27, 1599, 1820, 2013, 2045, 2427, 2469
SstI	GAGCTC	3 cut(s)	152, 2074, 2312
StuI	AGGCCT	1 cut(s)	1270
StyD4I	CCNGG	4 cut(s)	388, 1480, 1839, 2356
StyI	CCWWGG	2 cut(s)	620, 1978
TaaI	ACNGT	3 cut(s)	305, 2240, 2403
TaiI	ACGT	4 cut(s)	971, 1663, 2160, 2257
TaqI	TCGA	7 cut(s)	384, 396, 601, 728, 1457, 1684, 2074
TatI	WGTACW	2 cut(s)	1490, 1606
TauI	GCSGC	2 cut(s)	433, 1008
TfiI	GAWTC	9 cut(s)	341, 694, 725, 829, 836, 1091, 1681, 2318, 2419
TscAI	CASTG	4 cut(s)	310, 367, 1504, 2275
TseFI	GTSAC	1 cut(s)	2266
TseI	GCWGC	8 cut(s)	216, 941, 1016, 1226, 1415, 1544, 1784, 2180
Tsp45I	GTSAC	1 cut(s)	2266
TspGWI	ACGGA	1 cut(s)	1364
TspRI	CASTG	4 cut(s)	310, 367, 1504, 2275
Van91I	CCANNNNNTGG	2 cut(s)	144, 409
VneI	GTGCAC	1 cut(s)	2198
VpaK11BI	GGWCC	2 cut(s)	2148, 2273
VspI	ATTAAT	1 cut(s)	570
XapI	RAATTY	3 cut(s)	31, 1551, 2301
XceI	RCATGY	3 cut(s)	937, 1415, 1904
XmiI	GTMKAC	1 cut(s)	1134
XspI	CTAG	7 cut(s)	27, 1599, 1820, 2013, 2045, 2427, 2469
ZraI	GACGTC	1 cut(s)	2158
ZrmI	AGTACT	1 cut(s)	1492
Zsp2I	ATGCAT	2 cut(s)	1413, 2448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.