Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010446

Physical Location & Seq

Genomic Coordinates Reverse (-)

7210310 .. 7213474

Gene Structure 3165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGGGAGATCATCATGATTTCATCAACTCAGGAAGCTGGTGGAAAGTATCTTCTTCTTCTTCACCATCTTCTTCTTCTTCCATGAGAGCAAGCTCTATTGAATCTGGTGGTTCTGCTGTTTTCCATGATAAGCTTCATCATCATTCTTTAGCTACTGATCACCATCTTCAGATGATTGGTTTAGGACTTTCTTCACAATCACCTGTTGATCAATGGAACCAATCTCTCTTACGAGGAGATAGTAAAGCGGAGACAAGCTTTGGTGTGATGCTTCAAGAGAATCTCAATTTAGATGCCACTTCAAACGCAAACGCTAACACAACGTCATCCACATCTTCTTACCAGCTGCAAGAATCTGATTCCTCTCACCATCATCAAGCTTTGTGGCGAGATCCACAAAGCGATTTCAAACCGCAGATTTTAACGAGTGGTGGTAATCGCGGGTTTTTCTTAGATCATCAGTTCAGTCCTCATGGTAGCTCAAGTACCGACAGTAGCACAGTAACATGTCAAGGTTTCGCTGTTGACAACTCGTCAAACGCCATGTACGCAGCAACAACAACAACTCCTAATTCATCTTCCGGTATGTTTCATCATCAGCAAGCAGGTGGTTTTGGCTCTTCTGATCAACAACCGTCGAGGAATCATCAACAGTCATCTCTTGGCTATTCTCAGTTTGGATCATCCACCGGAAACTATGATCAAATGGCGTCAGCGTTACCATCGACTTGGTTTTTAAGATCTTCTCCGCCGCCAAAACCACACAGTCCTTTGAGATTCTCTAATAACGCAACGTTTTGGAACCCCGCGGCTGCGGGAAACGCCGGTGCTCCTCCTCCTCATGACGCGTCTTCTAACTTTTTCCCGGCGTTACAACCGCCGCAGATTCATCCGCAGAGTTTTGACGAACAACCAAAGAATATATCGGAGATTAGAGATTCAAGTAGCAACGAAGTAAAGAGAGGAGGAAACGATCATCAGCCGGCGGCGAAAAGAGCTAAGAGCGAAGCAGCGTCTCCGTCACCAGCTTTCAAGAGGAAAGAGAAAATGGGGGACAGAATCGCTGCGCTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATGCAGCCTCAGTGCTCTCTGAAGCCATTGAATACATTAAGTTCTTACACCAACAAGTTTCTGCTCTGAGCAACCCATACATGAAAAGTGGAGCTTCTTTACAACATCAACAGAGTGATCATTCCACAGAGCTAGAAGTATCAGAAGAACCAGATCTTAGAAGTCGAGGTTTATGCTTAGTGCCAGTTTCAAGCACATTTCCAGTGACACACGATACTACAGTAGATTTCTGGACTCCTACATTTGGTGGGACTTTTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

454

Amino Acids

49.06

Weight (kDa)

6.15

Isoelectric Point (pI)

71.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20640 AT3G20640 AT3G20640 AT3G20640
fragaria_vesca	FvH4_3g21440
malus_domestica	MD03G1216400.v1.1 MD11G1230700.v1.1
prunus_persica	Prupe.4G196600_v2.0.a1 Prupe.4G196600_v2.0.a1
pyrus_communis	pycom03g16440 pycom11g20430
rosa_chinensis	RchiOBHm_Chr5g0036871
rosa_laevigata	RLG00000033729
rosa_multiflora	Rmu_sc0000399.1_g000019
rosa_roxburghii	Rroxscaffold_1G00044130
rosa_rugosa	Rorug05G0158100
rosa_samantha	Rh5AG250700 Rh5BG252300 Rh5CG284300 Rh5DG260800
rosa_wichuraiana	Rw5G023060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	596
Acc36I	ACCTGC	1 cut(s)	596
AccB7I	CCANNNNNTGG	1 cut(s)	1078
AccII	CGCG	3 cut(s)	441, 809, 848
AclI	AACGTT	1 cut(s)	794
AclWI	GGATC	2 cut(s)	386, 688
AcuI	CTGAAG	2 cut(s)	152, 1143
AcyI	GRCGYC	1 cut(s)	710
AfaI	GTAC	2 cut(s)	487, 548
AfiI	CCNNNNNNNGG	2 cut(s)	1078, 1346
AflIII	ACRYGT	2 cut(s)	506, 846
AgsI	TTSAA	8 cut(s)	101, 275, 303, 409, 942, 1033, 1133, 1293
AhdI	GACNNNNNGTC	1 cut(s)	532
Alw21I	GWGCWC	2 cut(s)	832, 1119
Alw26I	GTCTC	2 cut(s)	245, 1020
AlwI	GGATC	2 cut(s)	386, 688
ApeKI	GCWGC	6 cut(s)	346, 551, 812, 1010, 1064, 1106
AspLEI	GCGC	1 cut(s)	1069
AsuC2I	CCSGG	1 cut(s)	866
AsuHPI	GGTGA	6 cut(s)	54, 152, 192, 359, 1014, 1077
BaeI	ACNNNNGTAYC	2 cut(s)	1308, 1341
BbsI	GAAGAC	1 cut(s)	843
Bbv12I	GWGCWC	2 cut(s)	832, 1119
BbvI	GCAGC	6 cut(s)	333, 563, 799, 1022, 1051, 1118
BccI	CCATC	4 cut(s)	73, 171, 378, 730
BcgI	CGANNNNNNTGC	2 cut(s)	1257, 1291
BclI	TGATCA	5 cut(s)	157, 208, 625, 700, 1219
BcnI	CCSGG	1 cut(s)	866
BcoDI	GTCTC	2 cut(s)	245, 1020
BfaI	CTAG	1 cut(s)	1235
BfmI	CTRYAG	1 cut(s)	1320
BfuAI	ACCTGC	1 cut(s)	596
BglII	AGATCT	2 cut(s)	740, 1255
Bme1390I	CCNGG	1 cut(s)	866
BmeRI	GACNNNNNGTC	1 cut(s)	532
BmiI	GGNNCC	2 cut(s)	218, 803
BmrFI	CCNGG	1 cut(s)	866
BmsI	GCATC	3 cut(s)	258, 283, 1093
BpiI	GAAGAC	1 cut(s)	843
BpuEI	CTTGAG	1 cut(s)	466
BpuMI	CCSGG	1 cut(s)	866
BsaBI	GATNNNNATC	1 cut(s)	162
BsaHI	GRCGYC	1 cut(s)	710
BsaJI	CCNNGG	1 cut(s)	807
BsaWI	WCCGGW	2 cut(s)	581, 689
BsaXI	ACNNNNNCTCC	2 cut(s)	550, 580
Bsc4I	CCNNNNNNNGG	2 cut(s)	1078, 1346
Bse118I	RCCGGY	2 cut(s)	824, 982
Bse1I	ACTGG	2 cut(s)	1286, 1304
Bse8I	GATNNNNATC	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	807
BseGI	GGATG	3 cut(s)	326, 683, 889
BseJI	GATNNNNATC	1 cut(s)	162
BseLI	CCNNNNNNNGG	2 cut(s)	1078, 1346
BseMII	CTCAG	4 cut(s)	42, 686, 1125, 1160
BseNI	ACTGG	2 cut(s)	1286, 1304
BseRI	GAGGAG	5 cut(s)	249, 822, 825, 828, 978
BseXI	GCAGC	6 cut(s)	333, 563, 799, 1022, 1051, 1118
Bsh1236I	CGCG	3 cut(s)	441, 809, 848
BsiHKAI	GWGCWC	2 cut(s)	832, 1119
BsiSI	CCGG	5 cut(s)	582, 690, 825, 866, 983
BslFI	GGGAC	1 cut(s)	1067
BslI	CCNNNNNNNGG	2 cut(s)	1078, 1346
BsmAI	GTCTC	2 cut(s)	245, 1020
BsmBI	CGTCTC	1 cut(s)	1020
BsmFI	GGGAC	1 cut(s)	1067
Bsp1286I	GDGCHC	2 cut(s)	832, 1119
BspCNI	CTCAG	4 cut(s)	41, 685, 1124, 1161
BspFNI	CGCG	3 cut(s)	441, 809, 848
BspHI	TCATGA	2 cut(s)	13, 841
BspLI	GGNNCC	2 cut(s)	218, 803
BspMI	ACCTGC	1 cut(s)	596
BspPI	GGATC	2 cut(s)	386, 688
BspQI	GCTCTTC	1 cut(s)	625
BsrFI	RCCGGY	2 cut(s)	824, 982
BsrI	ACTGG	2 cut(s)	1286, 1304
BssAI	RCCGGY	2 cut(s)	824, 982
BssECI	CCNNGG	1 cut(s)	807
BssNI	GRCGYC	1 cut(s)	710
Bst4CI	ACNGT	6 cut(s)	494, 502, 636, 654, 767, 1324
Bst6I	CTCTTC	1 cut(s)	625
BstACI	GRCGYC	1 cut(s)	710
BstC8I	GCNNGC	3 cut(s)	91, 603, 984
BstDEI	CTNAG	8 cut(s)	28, 451, 672, 999, 1111, 1169, 1259, 1279
BstDSI	CCRYGG	1 cut(s)	807
BstF5I	GGATG	3 cut(s)	326, 683, 889
BstFNI	CGCG	3 cut(s)	441, 809, 848
BstHHI	GCGC	1 cut(s)	1069
BstMAI	GTCTC	2 cut(s)	245, 1020
BstMWI	GCNNNNNNNGC	3 cut(s)	548, 821, 995
BstNSI	RCATGY	1 cut(s)	510
BstSCI	CCNGG	1 cut(s)	864
BstSFI	CTRYAG	1 cut(s)	1320
BstUI	CGCG	3 cut(s)	441, 809, 848
BstV1I	GCAGC	6 cut(s)	333, 563, 799, 1022, 1051, 1118
BstV2I	GAAGAC	1 cut(s)	843
BstX2I	RGATCY	3 cut(s)	391, 740, 1255
BstXI	CCANNNNNNTGG	1 cut(s)	729
BstYI	RGATCY	3 cut(s)	391, 740, 1255
BtgI	CCRYGG	1 cut(s)	807
BtsCI	GGATG	3 cut(s)	326, 683, 889
BtsIMutI	CAGTG	2 cut(s)	1119, 1311
BveI	ACCTGC	1 cut(s)	596
Cac8I	GCNNGC	3 cut(s)	91, 603, 984
CciI	TCATGA	2 cut(s)	13, 841
CfoI	GCGC	1 cut(s)	1069
Cfr10I	RCCGGY	2 cut(s)	824, 982
Cfr42I	CCGCGG	1 cut(s)	810
CseI	GACGC	4 cut(s)	699, 837, 854, 1002
Csp6I	GTAC	2 cut(s)	486, 547
CspCI	CAANNNNNGTGG	2 cut(s)	365, 400
CviAII	CATG	8 cut(s)	14, 82, 125, 473, 507, 544, 842, 1183
CviQI	GTAC	2 cut(s)	486, 547
DdeI	CTNAG	8 cut(s)	28, 451, 672, 999, 1111, 1169, 1259, 1279
DriI	GACNNNNNGTC	1 cut(s)	532
Eam1104I	CTCTTC	1 cut(s)	625
Eam1105I	GACNNNNNGTC	1 cut(s)	532
EarI	CTCTTC	1 cut(s)	625
EciI	GGCGGA	1 cut(s)	738
Eco57I	CTGAAG	2 cut(s)	152, 1143
Esp3I	CGTCTC	1 cut(s)	1020
FaeI	CATG	8 cut(s)	17, 85, 128, 476, 510, 547, 845, 1186
FalI	AAGNNNNNCTT	2 cut(s)	1180, 1212
FaqI	GGGAC	1 cut(s)	1067
FatI	CATG	8 cut(s)	13, 81, 124, 472, 506, 543, 841, 1182
FauI	CCCGC	3 cut(s)	434, 808, 814
FbaI	TGATCA	5 cut(s)	157, 208, 625, 700, 1219
FokI	GGATG	3 cut(s)	313, 670, 876
FspBI	CTAG	1 cut(s)	1235
GlaI	GCGC	1 cut(s)	1068
HapII	CCGG	5 cut(s)	582, 690, 825, 866, 983
HgaI	GACGC	4 cut(s)	699, 837, 854, 1002
HhaI	GCGC	1 cut(s)	1069
Hin1I	GRCGYC	1 cut(s)	710
Hin1II	CATG	8 cut(s)	17, 85, 128, 476, 510, 547, 845, 1186
Hin6I	GCGC	1 cut(s)	1067
HinP1I	GCGC	1 cut(s)	1067
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HindIII	AAGCTT	3 cut(s)	131, 256, 378
HpaII	CCGG	5 cut(s)	582, 690, 825, 866, 983
HphI	GGTGA	6 cut(s)	54, 152, 192, 359, 1014, 1077
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	8 cut(s)	171, 358, 625, 928, 1094, 1123, 1170, 1246
Hpy188III	TCNNGA	6 cut(s)	14, 30, 275, 842, 1033, 1333
Hpy8I	GTNNAC	1 cut(s)	526
Hpy99I	CGWCG	1 cut(s)	640
HpyCH4III	ACNGT	6 cut(s)	494, 502, 636, 654, 767, 1324
HpyCH4IV	ACGT	2 cut(s)	323, 794
HpyCH4V	TGCA	2 cut(s)	349, 1106
HpyF10VI	GCNNNNNNNGC	3 cut(s)	548, 821, 995
HpyF3I	CTNAG	8 cut(s)	28, 451, 672, 999, 1111, 1169, 1259, 1279
HpySE526I	ACGT	2 cut(s)	323, 794
Hsp92I	GRCGYC	1 cut(s)	710
Hsp92II	CATG	8 cut(s)	17, 85, 128, 476, 510, 547, 845, 1186
HspAI	GCGC	1 cut(s)	1067
KroI	GCCGGC	1 cut(s)	982
KroNI	GCCGGC	1 cut(s)	984
Ksp22I	TGATCA	5 cut(s)	157, 208, 625, 700, 1219
KspI	CCGCGG	1 cut(s)	810
LguI	GCTCTTC	1 cut(s)	625
LmnI	GCTCC	3 cut(s)	835, 1074, 1193
Lsp1109I	GCAGC	6 cut(s)	333, 563, 799, 1022, 1051, 1118
LweI	GCATC	3 cut(s)	258, 283, 1093
MaeI	CTAG	1 cut(s)	1235
MaeII	ACGT	2 cut(s)	323, 794
MaeIII	GTNAC	5 cut(s)	502, 717, 870, 1020, 1306
MfeI	CAATTG	1 cut(s)	1076
MflI	RGATCY	3 cut(s)	391, 740, 1255
MhlI	GDGCHC	2 cut(s)	832, 1119
MluCI	AATT	3 cut(s)	286, 571, 1076
MluI	ACGCGT	1 cut(s)	846
MlyI	GAGTC	1 cut(s)	1330
MmeI	TCCRAC	1 cut(s)	1096
MroNI	GCCGGC	1 cut(s)	982
MseI	TTAA	3 cut(s)	422, 737, 1140
MspA1I	CMGCKG	2 cut(s)	346, 809
MspI	CCGG	5 cut(s)	582, 690, 825, 866, 983
MspR9I	CCNGG	1 cut(s)	866
MunI	CAATTG	1 cut(s)	1076
MvnI	CGCG	3 cut(s)	441, 809, 848
MwoI	GCNNNNNNNGC	3 cut(s)	548, 821, 995
NaeI	GCCGGC	1 cut(s)	984
NciI	CCSGG	1 cut(s)	866
NgoMIV	GCCGGC	1 cut(s)	982
NlaIII	CATG	8 cut(s)	17, 85, 128, 476, 510, 547, 845, 1186
NlaIV	GGNNCC	2 cut(s)	218, 803
NmuCI	GTSAC	2 cut(s)	1020, 1306
NspI	RCATGY	1 cut(s)	510
PagI	TCATGA	2 cut(s)	13, 841
PaqCI	CACCTGC	1 cut(s)	596
PciI	ACATGT	1 cut(s)	506
PciSI	GCTCTTC	1 cut(s)	625
PdiI	GCCGGC	1 cut(s)	984
PfeI	GAWTC	9 cut(s)	101, 280, 353, 359, 643, 777, 886, 938, 1059
PflMI	CCANNNNNTGG	1 cut(s)	1078
PleI	GAGTC	1 cut(s)	1330
PpsI	GAGTC	1 cut(s)	1330
PscI	ACATGT	1 cut(s)	506
Psp1406I	AACGTT	1 cut(s)	794
PspN4I	GGNNCC	2 cut(s)	218, 803
PsuI	RGATCY	3 cut(s)	391, 740, 1255
PvuII	CAGCTG	1 cut(s)	346
RsaI	GTAC	2 cut(s)	487, 548
RsaNI	GTAC	2 cut(s)	486, 547
SacII	CCGCGG	1 cut(s)	810
SapI	GCTCTTC	1 cut(s)	625
SaqAI	TTAA	3 cut(s)	422, 737, 1140
SchI	GAGTC	1 cut(s)	1330
ScrFI	CCNGG	1 cut(s)	866
SduI	GDGCHC	2 cut(s)	832, 1119
SfaNI	GCATC	3 cut(s)	258, 283, 1093
SfcI	CTRYAG	1 cut(s)	1320
Sfr303I	CCGCGG	1 cut(s)	810
SgrAI	CRCCGGYG	1 cut(s)	824
SgrBI	CCGCGG	1 cut(s)	810
SmlI	CTYRAG	1 cut(s)	481
SmoI	CTYRAG	1 cut(s)	481
Sse9I	AATT	3 cut(s)	286, 571, 1076
SspMI	CTAG	1 cut(s)	1235
StyD4I	CCNGG	1 cut(s)	864
TaaI	ACNGT	6 cut(s)	494, 502, 636, 654, 767, 1324
TaiI	ACGT	2 cut(s)	326, 797
TaqI	TCGA	3 cut(s)	638, 725, 1267
TasI	AATT	3 cut(s)	286, 571, 1076
TauI	GCSGC	4 cut(s)	754, 812, 883, 989
TfiI	GAWTC	9 cut(s)	101, 280, 353, 359, 643, 777, 886, 938, 1059
Tru1I	TTAA	3 cut(s)	422, 737, 1140
Tru9I	TTAA	3 cut(s)	422, 737, 1140
TscAI	CASTG	2 cut(s)	1119, 1311
TseFI	GTSAC	2 cut(s)	1020, 1306
TseI	GCWGC	6 cut(s)	346, 551, 812, 1010, 1064, 1106
Tsp45I	GTSAC	2 cut(s)	1020, 1306
TspDTI	ATGAA	6 cut(s)	10, 125, 564, 581, 878, 1199
TspGWI	ACGGA	1 cut(s)	1008
TspRI	CASTG	2 cut(s)	1119, 1311
Van91I	CCANNNNNTGG	1 cut(s)	1078
XceI	RCATGY	1 cut(s)	510
XspI	CTAG	1 cut(s)	1235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.