Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000399.1

Orthogroup ID

OG0010446

Physical Location & Seq

Genomic Coordinates Reverse (-)

102877 .. 105193

Gene Structure 2317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000399.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

atggcagatgaatttcagaatactgggaactggtgggactcatcctcgacctcaagaaacaggtttgaaaccggtgcatcgccaccatcttcaggcctcaatagcttgggaagctttggatggcaaccagacatgattgaaatcaaggcaaggtcttctatggattccgggtcggtctccggtacttcttcaatggtcttccatgatcctcagaagctgcaagggtctgattcttccagtggaggcgaccctagcttgcacatgatgggtttagggcttaactctcagacaacagattggaaccaagccatatttcggggtgagaaggccgaggccagttttcgttcaatattacaagacaacatgaactccaacgcaaactttcagcaagaaacacacgatcagcaacaactccagtggagagacaagttgtttactggcagctccggcgaaatgagccggggtttttctttagaccaaacgcagtttagtcctcaatatagctccggcgaaagcacagtgacatgtcaaggcttgcccactagttttcaaatggattcagcagctttatacgggaccagtccaacaaccatattacaaggactgctgggatcacctcatgatcataatcagccacaagtcccacaaccgccttcaccctctatcatttttccatatcaagcaagttatggcattaactcgactgagctattgccttcttggtctaacaaagtccctcagtttctaagaacatcacctccaaaacacccttctaacagtcctcatagccatttgcaattttctaataacgctcccttttggaatgcacctcacgaggcagccatgaaagatgtccggccgacctttttcccgtcattgcaaccacaatttcccacggcacggttcgatgagaaaccaaagaatatatctgaagttcatcaggattctggtgcggtggtgaagaaaagtgggagtgaagcagcatccaaaaggcctcgaaatgaaatgtcatcaactttgccagcttttaaggtgaggaaagagaagatgggggacagaatcactgcactccaacaattggtttcgcctttcggaaagactgatacagcctcagtgctctctgaagccattgaatatatcaagttcctccatgaacaagtttccgttttaagcaacccatacatgaaaaatggagctgccatacaacaccagcagaaatctgataaatctaaagacctcgaaggtcccaaacatgacctaagaagccgtggactatgtttggttcctgtttcgagcaccttcccggccgcacatgagccaacagttgatttttggacgcctacatttggaggaacattcagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

454

Amino Acids

49.94

Weight (kDa)

6.4

Isoelectric Point (pI)

60.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20640 AT3G20640 AT3G20640 AT3G20640
fragaria_vesca	FvH4_3g21440
malus_domestica	MD03G1216400.v1.1 MD11G1230700.v1.1
prunus_persica	Prupe.4G196600_v2.0.a1 Prupe.4G196600_v2.0.a1
pyrus_communis	pycom03g16440 pycom11g20430
rosa_chinensis	RchiOBHm_Chr5g0036871
rosa_laevigata	RLG00000033729
rosa_multiflora	Rmu_sc0000399.1_g000019
rosa_roxburghii	Rroxscaffold_1G00044130
rosa_rugosa	Rorug05G0158100
rosa_samantha	Rh5AG250700 Rh5BG252300 Rh5CG284300 Rh5DG260800
rosa_wichuraiana	Rw5G023060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1078
AciI	CCGC	3 cut(s)	650, 953, 1308
AclWI	GGATC	2 cut(s)	200, 619
AcoI	YGGCCR	2 cut(s)	857, 1305
AcsI	RAATTY	1 cut(s)	11
AcuI	CTGAAG	3 cut(s)	75, 951, 1143
AcyI	GRCGYC	1 cut(s)	1337
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	5 cut(s)	92, 315, 900, 1078, 1346
AflIII	ACRYGT	1 cut(s)	524
AgeI	ACCGGT	1 cut(s)	71
AgsI	TTSAA	6 cut(s)	68, 140, 192, 348, 551, 1133
AhlI	ACTAGT	1 cut(s)	542
AjuI	GAANNNNNNNTTGG	4 cut(s)	297, 329, 754, 786
AloI	GAACNNNNNNTCC	2 cut(s)	742, 774
Alw21I	GWGCWC	2 cut(s)	1119, 1298
Alw26I	GTCTC	2 cut(s)	181, 417
AlwI	GGATC	2 cut(s)	200, 619
AlwNI	CAGNNNCTG	1 cut(s)	217
AoxI	GGCC	6 cut(s)	94, 327, 333, 857, 992, 1305
ApeKI	GCWGC	6 cut(s)	217, 441, 563, 839, 980, 1196
ApoI	RAATTY	1 cut(s)	11
AsiGI	ACCGGT	1 cut(s)	71
AspS9I	GGNCC	2 cut(s)	576, 1244
AsuC2I	CCSGG	3 cut(s)	169, 461, 1304
AsuHPI	GGTGA	6 cut(s)	332, 606, 648, 747, 970, 1045
AvaII	GGWCC	2 cut(s)	576, 1244
BauI	CACGAG	1 cut(s)	833
BbsI	GAAGAC	2 cut(s)	147, 190
Bbv12I	GWGCWC	2 cut(s)	1119, 1298
BbvI	GCAGC	6 cut(s)	204, 453, 575, 851, 992, 1183
BccI	CCATC	4 cut(s)	94, 114, 259, 1042
BceAI	ACGGC	2 cut(s)	912, 1251
BclI	TGATCA	1 cut(s)	622
BcnI	CCSGG	3 cut(s)	169, 461, 1304
BcoDI	GTCTC	2 cut(s)	181, 417
BcuI	ACTAGT	1 cut(s)	542
BfaI	CTAG	2 cut(s)	252, 543
BisI	GCNGC	7 cut(s)	218, 442, 564, 840, 981, 1197, 1308
BlsI	GCNGC	7 cut(s)	219, 443, 565, 841, 982, 1198, 1309
Bme1390I	CCNGG	3 cut(s)	169, 461, 1304
Bme18I	GGWCC	2 cut(s)	576, 1244
BmgT120I	GGNCC	2 cut(s)	576, 1244
BmiI	GGNNCC	4 cut(s)	302, 577, 1246, 1284
BmrFI	CCNGG	3 cut(s)	169, 461, 1304
BmrI	ACTGGG	1 cut(s)	33
BmsI	GCATC	2 cut(s)	86, 992
BmuI	ACTGGG	1 cut(s)	33
BpiI	GAAGAC	2 cut(s)	147, 190
BpmI	CTGGAG	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	37
BpuMI	CCSGG	3 cut(s)	169, 461, 1304
BsaBI	GATNNNNATC	2 cut(s)	140, 627
BsaHI	GRCGYC	1 cut(s)	1337
BsaI	GGTCTC	1 cut(s)	181
BsaJI	CCNNGG	4 cut(s)	330, 460, 894, 1267
BsaWI	WCCGGW	2 cut(s)	71, 179
BsaXI	ACNNNNNCTCC	4 cut(s)	353, 383, 742, 772
Bsc4I	CCNNNNNNNGG	5 cut(s)	92, 315, 900, 1078, 1346
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	7 cut(s)	28, 35, 237, 336, 415, 442, 579
Bse3DI	GCAATG	1 cut(s)	875
Bse8I	GATNNNNATC	2 cut(s)	140, 627
BseDI	CCNNGG	4 cut(s)	330, 460, 894, 1267
BseGI	GGATG	3 cut(s)	41, 125, 983
BseJI	GATNNNNATC	2 cut(s)	140, 627
BseLI	CCNNNNNNNGG	5 cut(s)	92, 315, 900, 1078, 1346
BseMI	GCAATG	1 cut(s)	875
BseMII	CTCAG	5 cut(s)	224, 299, 696, 752, 1125
BseNI	ACTGG	7 cut(s)	28, 35, 237, 336, 415, 442, 579
BseX3I	CGGCCG	2 cut(s)	857, 1305
BseXI	GCAGC	6 cut(s)	204, 453, 575, 851, 992, 1183
BseYI	CCCAGC	1 cut(s)	607
BsgI	GTGCAG	1 cut(s)	1050
Bsh1285I	CGRYCG	2 cut(s)	860, 1308
BshFI	GGCC	6 cut(s)	96, 329, 335, 859, 994, 1307
BshTI	ACCGGT	1 cut(s)	71
BsiEI	CGRYCG	2 cut(s)	860, 1308
BsiHKAI	GWGCWC	2 cut(s)	1119, 1298
BsiSI	CCGG	8 cut(s)	72, 168, 180, 447, 460, 507, 856, 1304
BslFI	GGGAC	6 cut(s)	50, 589, 626, 719, 1067, 1230
BslI	CCNNNNNNNGG	5 cut(s)	92, 315, 900, 1078, 1346
BsmAI	GTCTC	2 cut(s)	181, 417
BsmFI	GGGAC	6 cut(s)	50, 589, 626, 719, 1067, 1230
BsmI	GAATGC	1 cut(s)	829
BsnI	GGCC	6 cut(s)	96, 329, 335, 859, 994, 1307
Bso31I	GGTCTC	1 cut(s)	181
Bsp1286I	GDGCHC	2 cut(s)	1119, 1298
Bsp143I	GATC	4 cut(s)	205, 400, 611, 622
BspACI	CCGC	3 cut(s)	650, 953, 1308
BspANI	GGCC	6 cut(s)	96, 329, 335, 859, 994, 1307
BspCNI	CTCAG	5 cut(s)	223, 298, 697, 751, 1124
BspHI	TCATGA	1 cut(s)	619
BspLI	GGNNCC	4 cut(s)	302, 577, 1246, 1284
BspPI	GGATC	2 cut(s)	200, 619
BspTNI	GGTCTC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	875
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	7 cut(s)	28, 35, 237, 336, 415, 442, 579
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	4 cut(s)	330, 460, 894, 1267
BssMI	GATC	4 cut(s)	205, 400, 611, 622
BssNI	GRCGYC	1 cut(s)	1337
BssSI	CACGAG	1 cut(s)	833
Bst2BI	CACGAG	1 cut(s)	833
Bst4CI	ACNGT	4 cut(s)	520, 779, 903, 1324
BstACI	GRCGYC	1 cut(s)	1337
BstC8I	GCNNGC	3 cut(s)	257, 536, 1023
BstDEI	CTNAG	7 cut(s)	210, 285, 705, 738, 746, 1111, 1259
BstDSI	CCRYGG	2 cut(s)	894, 1267
BstF5I	GGATG	3 cut(s)	41, 125, 983
BstKTI	GATC	4 cut(s)	208, 403, 614, 625
BstMAI	GTCTC	2 cut(s)	181, 417
BstMBI	GATC	4 cut(s)	205, 400, 611, 622
BstMCI	CGRYCG	2 cut(s)	860, 1308
BstMWI	GCNNNNNNNGC	5 cut(s)	102, 111, 252, 447, 456
BstNSI	RCATGY	1 cut(s)	528
BstSCI	CCNGG	3 cut(s)	167, 459, 1302
BstV1I	GCAGC	6 cut(s)	204, 453, 575, 851, 992, 1183
BstV2I	GAAGAC	2 cut(s)	147, 190
BstZI	CGGCCG	2 cut(s)	857, 1305
BsuRI	GGCC	6 cut(s)	96, 329, 335, 859, 994, 1307
BtgI	CCRYGG	2 cut(s)	894, 1267
BtgZI	GCGATG	1 cut(s)	63
BtsCI	GGATG	3 cut(s)	41, 125, 983
BtsI	GCAGTG	1 cut(s)	1062
BtsIMutI	CAGTG	5 cut(s)	244, 422, 525, 1062, 1119
Cac8I	GCNNGC	3 cut(s)	257, 536, 1023
CaiI	CAGNNNCTG	1 cut(s)	217
CciI	TCATGA	1 cut(s)	619
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	2 cut(s)	576, 1244
CseI	GACGC	1 cut(s)	1345
Csp6I	GTAC	1 cut(s)	183
CspAI	ACCGGT	1 cut(s)	71
CspCI	CAANNNNNGTGG	2 cut(s)	398, 433
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	7 cut(s)	210, 285, 705, 738, 746, 1111, 1259
DpnI	GATC	4 cut(s)	207, 402, 613, 624
DpnII	GATC	4 cut(s)	205, 400, 611, 622
EaeI	YGGCCR	2 cut(s)	857, 1305
EagI	CGGCCG	2 cut(s)	857, 1305
EclXI	CGGCCG	2 cut(s)	857, 1305
Eco147I	AGGCCT	2 cut(s)	96, 994
Eco31I	GGTCTC	1 cut(s)	181
Eco47I	GGWCC	2 cut(s)	576, 1244
Eco52I	CGGCCG	2 cut(s)	857, 1305
Eco57I	CTGAAG	3 cut(s)	75, 951, 1143
EcoO109I	RGGNCCY	1 cut(s)	1244
FaqI	GGGAC	6 cut(s)	50, 589, 626, 719, 1067, 1230
FbaI	TGATCA	1 cut(s)	622
Fnu4HI	GCNGC	7 cut(s)	218, 442, 564, 840, 981, 1197, 1308
FokI	GGATG	3 cut(s)	28, 132, 970
Fsp4HI	GCNGC	7 cut(s)	218, 442, 564, 840, 981, 1197, 1308
FspBI	CTAG	2 cut(s)	252, 543
GluI	GCNGC	7 cut(s)	218, 442, 564, 840, 981, 1197, 1308
GsaI	CCCAGC	1 cut(s)	611
GsuI	CTGGAG	1 cut(s)	398
HaeIII	GGCC	6 cut(s)	96, 329, 335, 859, 994, 1307
HapII	CCGG	8 cut(s)	72, 168, 180, 447, 460, 507, 856, 1304
HgaI	GACGC	1 cut(s)	1345
Hin1I	GRCGYC	1 cut(s)	1337
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	6 cut(s)	38, 164, 230, 557, 944, 1059
HpaII	CCGG	8 cut(s)	72, 168, 180, 447, 460, 507, 856, 1304
HphI	GGTGA	6 cut(s)	332, 606, 648, 747, 970, 1045
Hpy166II	GTNNAC	2 cut(s)	435, 1271
Hpy188I	TCNGA	9 cut(s)	18, 213, 229, 288, 931, 1094, 1123, 1222, 1361
Hpy188III	TCNNGA	4 cut(s)	54, 620, 833, 941
Hpy8I	GTNNAC	2 cut(s)	435, 1271
HpyAV	CCTTC	6 cut(s)	319, 663, 726, 780, 1235, 1309
HpyCH4III	ACNGT	4 cut(s)	520, 779, 903, 1324
HpyCH4V	TGCA	7 cut(s)	77, 220, 259, 796, 827, 880, 1067
HpyF10VI	GCNNNNNNNGC	5 cut(s)	102, 111, 252, 447, 456
HpyF3I	CTNAG	7 cut(s)	210, 285, 705, 738, 746, 1111, 1259
Hsp92I	GRCGYC	1 cut(s)	1337
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	4 cut(s)	205, 400, 611, 622
LmnI	GCTCC	4 cut(s)	449, 509, 817, 1193
Lsp1109I	GCAGC	6 cut(s)	204, 453, 575, 851, 992, 1183
LweI	GCATC	2 cut(s)	86, 992
MaeI	CTAG	2 cut(s)	252, 543
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	4 cut(s)	207, 402, 613, 624
MboI	GATC	4 cut(s)	205, 400, 611, 622
MboII	GAAGA	7 cut(s)	81, 147, 180, 190, 225, 973, 1057
MfeI	CAATTG	1 cut(s)	1076
MhlI	GDGCHC	2 cut(s)	1119, 1298
MluCI	AATT	4 cut(s)	11, 797, 887, 1076
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	3 cut(s)	396, 608, 1096
MseI	TTAA	4 cut(s)	279, 696, 1029, 1169
MspI	CCGG	8 cut(s)	72, 168, 180, 447, 460, 507, 856, 1304
MspR9I	CCNGG	3 cut(s)	169, 461, 1304
MunI	CAATTG	1 cut(s)	1076
Mva1269I	GAATGC	1 cut(s)	829
MwoI	GCNNNNNNNGC	5 cut(s)	102, 111, 252, 447, 456
NciI	CCSGG	3 cut(s)	169, 461, 1304
NdeII	GATC	4 cut(s)	205, 400, 611, 622
NlaIV	GGNNCC	4 cut(s)	302, 577, 1246, 1284
NmeAIII	GCCGAG	1 cut(s)	355
NmuCI	GTSAC	1 cut(s)	520
NspI	RCATGY	1 cut(s)	528
PagI	TCATGA	1 cut(s)	619
PceI	AGGCCT	2 cut(s)	96, 994
PciI	ACATGT	1 cut(s)	524
PctI	GAATGC	1 cut(s)	829
PfeI	GAWTC	5 cut(s)	164, 230, 557, 944, 1059
PflMI	CCANNNNNTGG	1 cut(s)	1078
PinAI	ACCGGT	1 cut(s)	71
PkrI	GCNGC	7 cut(s)	219, 443, 565, 841, 982, 1198, 1309
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PpuMI	RGGWCCY	1 cut(s)	1244
PscI	ACATGT	1 cut(s)	524
Psp5II	RGGWCCY	1 cut(s)	1244
PspFI	CCCAGC	1 cut(s)	607
PspN4I	GGNNCC	4 cut(s)	302, 577, 1246, 1284
PspPI	GGNCC	2 cut(s)	576, 1244
PspPPI	RGGWCCY	1 cut(s)	1244
PstNI	CAGNNNCTG	1 cut(s)	217
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
SaqAI	TTAA	4 cut(s)	279, 696, 1029, 1169
SatI	GCNGC	7 cut(s)	218, 442, 564, 840, 981, 1197, 1308
Sau3AI	GATC	4 cut(s)	205, 400, 611, 622
Sau96I	GGNCC	2 cut(s)	576, 1244
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	3 cut(s)	169, 461, 1304
SduI	GDGCHC	2 cut(s)	1119, 1298
SfaNI	GCATC	2 cut(s)	86, 992
SinI	GGWCC	2 cut(s)	576, 1244
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
SpeI	ACTAGT	1 cut(s)	542
Sse9I	AATT	4 cut(s)	11, 797, 887, 1076
SseBI	AGGCCT	2 cut(s)	96, 994
SsiI	CCGC	3 cut(s)	650, 953, 1308
SspI	AATATT	1 cut(s)	351
SspMI	CTAG	2 cut(s)	252, 543
StuI	AGGCCT	2 cut(s)	96, 994
StyD4I	CCNGG	3 cut(s)	167, 459, 1302
TaaI	ACNGT	4 cut(s)	520, 779, 903, 1324
TaqI	TCGA	6 cut(s)	47, 701, 906, 997, 1239, 1292
TaqII	GACCGA	1 cut(s)	163
TasI	AATT	4 cut(s)	11, 797, 887, 1076
TauI	GCSGC	1 cut(s)	1310
TfiI	GAWTC	5 cut(s)	164, 230, 557, 944, 1059
Tru1I	TTAA	4 cut(s)	279, 696, 1029, 1169
Tru9I	TTAA	4 cut(s)	279, 696, 1029, 1169
TscAI	CASTG	5 cut(s)	244, 422, 525, 1069, 1119
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	6 cut(s)	217, 441, 563, 839, 980, 1196
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	7 cut(s)	24, 380, 860, 926, 1017, 1167, 1199
TspGWI	ACGGA	1 cut(s)	1153
TspRI	CASTG	5 cut(s)	244, 422, 525, 1069, 1119
Van91I	CCANNNNNTGG	1 cut(s)	1078
VpaK11BI	GGWCC	2 cut(s)	576, 1244
XapI	RAATTY	1 cut(s)	11
XceI	RCATGY	1 cut(s)	528
XspI	CTAG	2 cut(s)	252, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.