Prupe.4G196600_v2.0.a1

transcription factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
11992859 .. 11996137
3279 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G196600.1

Sequence Viewer

Length: 1362 bp
ATGGCAGATGAATTTCAGACCACTGGGAACTGGTGGGATTCATCATCAAGAACCCGGTTCGAGACCGGGACATCACCGCCAGCTTCAACCCTCAATAGCTTGGGAAGCTTTGGATGGCAACCAGACATGGTTGACATCAAGGCAAGGTCTTCTATGGATTCCGGGTCTGTTTCGGGTACTTCTTCAATGGTCTTCCATGGTGCTCACAAGCTGGAAGAAGGCCCTGACTCCGCCACGGGAAGCGGCGGAGACCCCAGCTTGCATATGATGGGTTTAGGGCTTTCCTCCCAGGCGACAGATTGGAACCATGCCTTATTTCGTGGGGAGAAGGCGGAGACCAGTTTCCGTTCAATACTACAAGAAAACATGAATTCTAACACAAACTTTCATCAAGAAAATGACCAACAGCTCCAATGGAGGGACAAGTTGTTTGCTGGTGGTTGTGGAGACTCTTCTAACAACGAGTTTAAGCAAATGAACCGGGGTTTCTCTTTAGATCAAACGCAGTTTAGTCCTCAGTACAGCTCCGGCGACAGCACGGTGACGTGCCAAGGCTTGCCTTCTAGCTTTCAGATGGATTCAGGAGCAGCTTTGTATGGAAGCCCCTCAACCATATTGCAAGGACTATTGGGGCCTCATCATGATAATCAGCAGCCTAACTCAGCCCCTATGAATTTTCCTTATCAAGCAAATTATGGGGTAAACTCTAGTGATCAGCTATTGCCGCCTTGGTCTAAAGTGCCTCAATTTCTAAGAACATCACCCCCAAAACAACCTCCTCAAAGCCATTTACAATTTTCTAATAATGCTACCTTCTGGAATGCACCTCATGAGGCCGCCATGAAAGATGTCCGCCCGAGCTTTTTCCCATCGTTGCAGCCGCAGTATCCCACGGCACGATTCGAAGAAAAACCCAAGAATATATCTGAAGTTCAGGAATCGGGTGCAGTGGGGAAGAAAAGTGGGAGTGAAACAGCAACCAAAAGGCCTCGGAATGAAACCTCATCACCCTTGCCAGCTTTTAAGGTGAGGAAAGAGAAGATGGGGGACAGAATCACTGCCCTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCCTCAGTGCTCTCTGAAGCCATTGAATATATCAAGTTTCTCCACGAACAAGTTAATGTTTTAAGCACCCCATACATGAAAAGTGGAGCTGCCATACAACACCAGCAGAATTCTGATAAATCTAAGGACCCAGATCAAGGTCCGAAGCAAGATCTTAGAAGCCGAGGACTGTGTTTGGTACCGGTTTCGAGCACATTCCCGGTCACACATGGGACAACAGTTGATTTTTGGACGCCTACATTTGGAGGAACTTTCAGATAG

Protein Analysis

454

Amino Acids

49.7

Weight (kDa)

6.19

Isoelectric Point (pI)

53.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010446)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1279
AccB1I GGYRCC 1 cut(s) 1279
AccB7I CCANNNNNTGG 1 cut(s) 1072
AciI CCGC 9 cut(s) 77, 231, 243, 246, 332, 725, 837, 853, 881
AcsI RAATTY 4 cut(s) 11, 370, 673, 1210
AcuI CTGAAG 2 cut(s) 948, 1137
AcyI GRCGYC 1 cut(s) 1334
AfaI GTAC 3 cut(s) 178, 521, 1281
AfiI CCNNNNNNNGG 4 cut(s) 418, 1072, 1238, 1343
AgeI ACCGGT 1 cut(s) 1282
AgsI TTSAA 4 cut(s) 87, 186, 351, 1127
AjiI CACGTC 1 cut(s) 546
AjnI CCWGG 1 cut(s) 288
Alw21I GWGCWC 3 cut(s) 205, 1113, 1295
Alw26I GTCTC 4 cut(s) 56, 243, 329, 441
Ama87I CYCGRG 1 cut(s) 856
AoxI GGCC 4 cut(s) 220, 632, 834, 986
ApeKI GCWGC 4 cut(s) 587, 652, 877, 1190
ApoI RAATTY 4 cut(s) 11, 370, 673, 1210
ArsI GACNNNNNNTTYG 2 cut(s) 413, 445
AsiGI ACCGGT 1 cut(s) 1282
Asp718I GGTACC 1 cut(s) 1279
AspS9I GGNCC 4 cut(s) 221, 632, 1228, 1241
AsuC2I CCSGG 5 cut(s) 55, 67, 163, 482, 1301
AsuHPI GGTGA 6 cut(s) 66, 553, 753, 999, 1039, 1071
AsuII TTCGAA 1 cut(s) 903
AvaI CYCGRG 1 cut(s) 856
AvaII GGWCC 2 cut(s) 1228, 1241
BanI GGYRCC 1 cut(s) 1279
BbsI GAAGAC 2 cut(s) 141, 184
Bbv12I GWGCWC 3 cut(s) 205, 1113, 1295
BbvI GCAGC 4 cut(s) 599, 664, 889, 1177
BccI CCATC 5 cut(s) 108, 262, 568, 877, 1036
BceAI ACGGC 1 cut(s) 909
BciT130I CCWGG 1 cut(s) 290
BciVI GTATCC 1 cut(s) 897
BclI TGATCA 1 cut(s) 712
BcnI CCSGG 5 cut(s) 55, 67, 163, 482, 1301
BcoDI GTCTC 4 cut(s) 56, 243, 329, 441
BfaI CTAG 2 cut(s) 564, 708
BfuI GTATCC 1 cut(s) 897
BglII AGATCT 1 cut(s) 1252
BisI GCNGC 8 cut(s) 244, 588, 653, 725, 837, 878, 881, 1191
BlsI GCNGC 8 cut(s) 245, 589, 654, 726, 838, 879, 882, 1192
Bme1390I CCNGG 6 cut(s) 55, 67, 163, 290, 482, 1301
Bme18I GGWCC 2 cut(s) 1228, 1241
BmeT110I CYCGRG 1 cut(s) 856
BmgBI CACGTC 1 cut(s) 546
BmgT120I GGNCC 4 cut(s) 221, 632, 1228, 1241
BmiI GGNNCC 4 cut(s) 305, 633, 1230, 1281
BmrFI CCNGG 6 cut(s) 55, 67, 163, 290, 482, 1301
BmrI ACTGGG 1 cut(s) 33
BmuI ACTGGG 1 cut(s) 33
BpiI GAAGAC 2 cut(s) 141, 184
Bpu14I TTCGAA 1 cut(s) 903
BpuMI CCSGG 5 cut(s) 55, 67, 163, 482, 1301
BsaHI GRCGYC 1 cut(s) 1334
BsaI GGTCTC 3 cut(s) 56, 243, 329
BsaJI CCNNGG 9 cut(s) 196, 234, 288, 481, 550, 728, 891, 989, 1264
BsaWI WCCGGW 1 cut(s) 1282
Bsc4I CCNNNNNNNGG 4 cut(s) 418, 1072, 1238, 1343
Bse118I RCCGGY 1 cut(s) 1282
Bse1I ACTGG 3 cut(s) 28, 35, 339
BseBI CCWGG 1 cut(s) 290
BseDI CCNNGG 9 cut(s) 196, 234, 288, 481, 550, 728, 891, 989, 1264
BseGI GGATG 1 cut(s) 119
BseLI CCNNNNNNNGG 4 cut(s) 418, 1072, 1238, 1343
BseMII CTCAG 3 cut(s) 530, 675, 1119
BseNI ACTGG 3 cut(s) 28, 35, 339
BseRI GAGGAG 1 cut(s) 768
BseXI GCAGC 4 cut(s) 599, 664, 889, 1177
BseYI CCCAGC 1 cut(s) 254
BsgI GTGCAG 1 cut(s) 966
BshFI GGCC 4 cut(s) 222, 634, 836, 988
BshNI GGYRCC 1 cut(s) 1279
BshTI ACCGGT 1 cut(s) 1282
BsiHKAI GWGCWC 3 cut(s) 205, 1113, 1295
BsiHKCI CYCGRG 1 cut(s) 856
BsiSI CCGG 7 cut(s) 55, 66, 162, 481, 528, 1283, 1301
BslFI GGGAC 4 cut(s) 82, 434, 1061, 1327
BslI CCNNNNNNNGG 4 cut(s) 418, 1072, 1238, 1343
BsmAI GTCTC 4 cut(s) 56, 243, 329, 441
BsmFI GGGAC 4 cut(s) 82, 434, 1061, 1327
BsmI GAATGC 1 cut(s) 826
BsnI GGCC 4 cut(s) 222, 634, 836, 988
Bso31I GGTCTC 3 cut(s) 56, 243, 329
BsoBI CYCGRG 1 cut(s) 856
Bsp119I TTCGAA 1 cut(s) 903
Bsp1286I GDGCHC 3 cut(s) 205, 1113, 1295
Bsp143I GATC 4 cut(s) 496, 712, 1234, 1252
Bsp19I CCATGG 1 cut(s) 196
BspACI CCGC 9 cut(s) 77, 231, 243, 246, 332, 725, 837, 853, 881
BspANI GGCC 4 cut(s) 222, 634, 836, 988
BspCNI CTCAG 3 cut(s) 529, 674, 1118
BspHI TCATGA 2 cut(s) 640, 829
BspLI GGNNCC 4 cut(s) 305, 633, 1230, 1281
BspT104I TTCGAA 1 cut(s) 903
BspT107I GGYRCC 1 cut(s) 1279
BspTNI GGTCTC 3 cut(s) 56, 243, 329
BsrFI RCCGGY 1 cut(s) 1282
BsrI ACTGG 3 cut(s) 28, 35, 339
BssAI RCCGGY 1 cut(s) 1282
BssECI CCNNGG 9 cut(s) 196, 234, 288, 481, 550, 728, 891, 989, 1264
BssMI GATC 4 cut(s) 496, 712, 1234, 1252
BssNI GRCGYC 1 cut(s) 1334
BssT1I CCWWGG 3 cut(s) 196, 550, 728
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 3 cut(s) 541, 1272, 1321
Bst6I CTCTTC 1 cut(s) 457
BstACI GRCGYC 1 cut(s) 1334
BstBI TTCGAA 1 cut(s) 903
BstC8I GCNNGC 4 cut(s) 81, 260, 557, 1017
BstDEI CTNAG 6 cut(s) 516, 661, 752, 1105, 1224, 1256
BstDSI CCRYGG 3 cut(s) 196, 234, 891
BstF5I GGATG 1 cut(s) 119
BstKTI GATC 4 cut(s) 499, 715, 1237, 1255
BstMAI GTCTC 4 cut(s) 56, 243, 329, 441
BstMBI GATC 4 cut(s) 496, 712, 1234, 1252
BstMWI GCNNNNNNNGC 2 cut(s) 105, 724
BstNI CCWGG 1 cut(s) 290
BstSCI CCNGG 6 cut(s) 53, 65, 161, 288, 480, 1299
BstV1I GCAGC 4 cut(s) 599, 664, 889, 1177
BstV2I GAAGAC 2 cut(s) 141, 184
BstX2I RGATCY 1 cut(s) 1252
BstYI RGATCY 1 cut(s) 1252
BsuI GTATCC 1 cut(s) 897
BsuRI GGCC 4 cut(s) 222, 634, 836, 988
BtgI CCRYGG 3 cut(s) 196, 234, 891
BtrI CACGTC 1 cut(s) 546
BtsCI GGATG 1 cut(s) 119
BtsI GCAGTG 2 cut(s) 954, 1056
BtsIMutI CAGTG 4 cut(s) 21, 954, 1056, 1113
Cac8I GCNNGC 4 cut(s) 81, 260, 557, 1017
CciI TCATGA 2 cut(s) 640, 829
Cfr10I RCCGGY 1 cut(s) 1282
Cfr13I GGNCC 4 cut(s) 221, 632, 1228, 1241
CseI GACGC 1 cut(s) 1342
Csp6I GTAC 3 cut(s) 177, 520, 1280
CspAI ACCGGT 1 cut(s) 1282
CviAII CATG 9 cut(s) 127, 197, 308, 367, 641, 830, 841, 1177, 1310
CviQI GTAC 3 cut(s) 177, 520, 1280
DdeI CTNAG 6 cut(s) 516, 661, 752, 1105, 1224, 1256
DpnI GATC 4 cut(s) 498, 714, 1236, 1254
DpnII GATC 4 cut(s) 496, 712, 1234, 1252
Eam1104I CTCTTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 457
EciI GGCGGA 4 cut(s) 220, 261, 347, 842
Eco130I CCWWGG 3 cut(s) 196, 550, 728
Eco147I AGGCCT 1 cut(s) 988
Eco31I GGTCTC 3 cut(s) 56, 243, 329
Eco47I GGWCC 2 cut(s) 1228, 1241
Eco57I CTGAAG 2 cut(s) 948, 1137
Eco88I CYCGRG 1 cut(s) 856
EcoO109I RGGNCCY 3 cut(s) 221, 632, 1228
EcoRI GAATTC 2 cut(s) 370, 1210
EcoRII CCWGG 1 cut(s) 288
EcoT14I CCWWGG 3 cut(s) 196, 550, 728
ErhI CCWWGG 3 cut(s) 196, 550, 728
FaeI CATG 9 cut(s) 130, 200, 311, 370, 644, 833, 844, 1180, 1313
FaqI GGGAC 4 cut(s) 82, 434, 1061, 1327
FatI CATG 9 cut(s) 126, 196, 307, 366, 640, 829, 840, 1176, 1309
FauNDI CATATG 1 cut(s) 264
FbaI TGATCA 1 cut(s) 712
Fnu4HI GCNGC 8 cut(s) 244, 588, 653, 725, 837, 878, 881, 1191
FokI GGATG 1 cut(s) 126
Fsp4HI GCNGC 8 cut(s) 244, 588, 653, 725, 837, 878, 881, 1191
FspBI CTAG 2 cut(s) 564, 708
GluI GCNGC 8 cut(s) 244, 588, 653, 725, 837, 878, 881, 1191
GsaI CCCAGC 1 cut(s) 258
HaeIII GGCC 4 cut(s) 222, 634, 836, 988
HapII CCGG 7 cut(s) 55, 66, 162, 481, 528, 1283, 1301
HgaI GACGC 1 cut(s) 1342
Hin1I GRCGYC 1 cut(s) 1334
Hin1II CATG 9 cut(s) 130, 200, 311, 370, 644, 833, 844, 1180, 1313
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HindIII AAGCTT 1 cut(s) 106
HinfI GANTC 8 cut(s) 38, 158, 227, 449, 578, 900, 938, 1053
HpaII CCGG 7 cut(s) 55, 66, 162, 481, 528, 1283, 1301
HphI GGTGA 6 cut(s) 66, 553, 753, 999, 1039, 1071
Hpy166II GTNNAC 2 cut(s) 133, 703
Hpy188I TCNGA 9 cut(s) 18, 573, 928, 993, 1088, 1117, 1216, 1245, 1358
Hpy188III TCNNGA 8 cut(s) 48, 61, 392, 582, 641, 817, 830, 935
Hpy8I GTNNAC 2 cut(s) 133, 703
HpyAV CCTTC 4 cut(s) 212, 322, 570, 823
HpyCH4III ACNGT 3 cut(s) 541, 1272, 1321
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 5 cut(s) 262, 619, 824, 877, 947
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 724
HpyF3I CTNAG 6 cut(s) 516, 661, 752, 1105, 1224, 1256
HpySE526I ACGT 1 cut(s) 545
Hsp92I GRCGYC 1 cut(s) 1334
Hsp92II CATG 9 cut(s) 130, 200, 311, 370, 644, 833, 844, 1180, 1313
KpnI GGTACC 1 cut(s) 1283
Ksp22I TGATCA 1 cut(s) 712
Kzo9I GATC 4 cut(s) 496, 712, 1234, 1252
LmnI GCTCC 4 cut(s) 414, 530, 584, 1187
Lsp1109I GCAGC 4 cut(s) 599, 664, 889, 1177
MaeI CTAG 2 cut(s) 564, 708
MaeII ACGT 1 cut(s) 545
MaeIII GTNAC 2 cut(s) 541, 1303
MalI GATC 4 cut(s) 498, 714, 1236, 1254
MboI GATC 4 cut(s) 496, 712, 1234, 1252
MboII GAAGA 8 cut(s) 141, 174, 184, 227, 444, 917, 967, 1051
MfeI CAATTG 1 cut(s) 1070
MflI RGATCY 1 cut(s) 1252
MhlI GDGCHC 3 cut(s) 205, 1113, 1295
MluCI AATT 8 cut(s) 11, 370, 673, 691, 746, 794, 1070, 1210
MlyI GAGTC 2 cut(s) 221, 443
MmeI TCCRAC 1 cut(s) 1090
MseI TTAA 4 cut(s) 468, 1023, 1155, 1163
MspI CCGG 7 cut(s) 55, 66, 162, 481, 528, 1283, 1301
MspR9I CCNGG 6 cut(s) 55, 67, 163, 290, 482, 1301
MunI CAATTG 1 cut(s) 1070
Mva1269I GAATGC 1 cut(s) 826
MvaI CCWGG 1 cut(s) 290
MwoI GCNNNNNNNGC 2 cut(s) 105, 724
NciI CCSGG 5 cut(s) 55, 67, 163, 482, 1301
NcoI CCATGG 1 cut(s) 196
NdeI CATATG 1 cut(s) 264
NdeII GATC 4 cut(s) 496, 712, 1234, 1252
NlaIII CATG 9 cut(s) 130, 200, 311, 370, 644, 833, 844, 1180, 1313
NlaIV GGNNCC 4 cut(s) 305, 633, 1230, 1281
NmeAIII GCCGAG 1 cut(s) 1289
NmuCI GTSAC 2 cut(s) 541, 1303
NspV TTCGAA 1 cut(s) 903
PagI TCATGA 2 cut(s) 640, 829
PceI AGGCCT 1 cut(s) 988
PctI GAATGC 1 cut(s) 826
PfeI GAWTC 6 cut(s) 38, 158, 578, 900, 938, 1053
PflMI CCANNNNNTGG 1 cut(s) 1072
PinAI ACCGGT 1 cut(s) 1282
PkrI GCNGC 8 cut(s) 245, 589, 654, 726, 838, 879, 882, 1192
PleI GAGTC 2 cut(s) 221, 443
PpsI GAGTC 2 cut(s) 221, 443
PpuMI RGGWCCY 1 cut(s) 1228
Psp5II RGGWCCY 1 cut(s) 1228
Psp6I CCWGG 1 cut(s) 288
PspFI CCCAGC 1 cut(s) 254
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 4 cut(s) 305, 633, 1230, 1281
PspPI GGNCC 4 cut(s) 221, 632, 1228, 1241
PspPPI RGGWCCY 1 cut(s) 1228
PsuI RGATCY 1 cut(s) 1252
RsaI GTAC 3 cut(s) 178, 521, 1281
RsaNI GTAC 3 cut(s) 177, 520, 1280
SaqAI TTAA 4 cut(s) 468, 1023, 1155, 1163
SatI GCNGC 8 cut(s) 244, 588, 653, 725, 837, 878, 881, 1191
Sau3AI GATC 4 cut(s) 496, 712, 1234, 1252
Sau96I GGNCC 4 cut(s) 221, 632, 1228, 1241
SchI GAGTC 2 cut(s) 221, 443
ScrFI CCNGG 6 cut(s) 55, 67, 163, 290, 482, 1301
SduI GDGCHC 3 cut(s) 205, 1113, 1295
SfuI TTCGAA 1 cut(s) 903
SinI GGWCC 2 cut(s) 1228, 1241
Sse9I AATT 8 cut(s) 11, 370, 673, 691, 746, 794, 1070, 1210
SseBI AGGCCT 1 cut(s) 988
SsiI CCGC 9 cut(s) 77, 231, 243, 246, 332, 725, 837, 853, 881
SspMI CTAG 2 cut(s) 564, 708
StuI AGGCCT 1 cut(s) 988
StyD4I CCNGG 6 cut(s) 53, 65, 161, 288, 480, 1299
StyI CCWWGG 3 cut(s) 196, 550, 728
TaaI ACNGT 3 cut(s) 541, 1272, 1321
TaiI ACGT 1 cut(s) 548
TaqI TCGA 3 cut(s) 60, 903, 1289
TasI AATT 8 cut(s) 11, 370, 673, 691, 746, 794, 1070, 1210
TatI WGTACW 1 cut(s) 519
TauI GCSGC 4 cut(s) 246, 727, 839, 883
TfiI GAWTC 6 cut(s) 38, 158, 578, 900, 938, 1053
Tru1I TTAA 4 cut(s) 468, 1023, 1155, 1163
Tru9I TTAA 4 cut(s) 468, 1023, 1155, 1163
TscAI CASTG 4 cut(s) 28, 954, 1063, 1113
TseFI GTSAC 2 cut(s) 541, 1303
TseI GCWGC 4 cut(s) 587, 652, 877, 1190
Tsp45I GTSAC 2 cut(s) 541, 1303
TspDTI ATGAA 9 cut(s) 24, 30, 377, 383, 491, 686, 857, 1011, 1193
TspGWI ACGGA 1 cut(s) 335
TspRI CASTG 4 cut(s) 28, 954, 1063, 1113
Van91I CCANNNNNTGG 1 cut(s) 1072
VpaK11BI GGWCC 2 cut(s) 1228, 1241
XapI RAATTY 4 cut(s) 11, 370, 673, 1210
XspI CTAG 2 cut(s) 564, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.