Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010446

Physical Location & Seq

Genomic Coordinates Reverse (-)

14526064 .. 14529322

Gene Structure 3259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g21440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGCAGATGAATATCAGAATACTGGGAACTGGTGGGACTCAACATCAAGAAACAGGTTTGAAACCGGCTCATCGCCACCGTCTTCAAGCCTCAACAGCTTGGGAAGCTTTGGATGGCAACCAGACATGATTGAAATGAAGTCAAGGTCTTCTATGGATTCCGGGTCGGTCTCTGGTACTTCTTCCATAGTCTTCCATGATCCCCAGAAGCTGCAAGGGTCTGATTCTTCGAGTGGAGGCGATCCTAGCTTGCACATGATGGGTTTAGGGCTTAACTCTCAGGCGACAGATTGGAACCAAGCCATATTTCGTGGTGAGAAGGCCGAGACCAGTTTTCGTTCAATATTACAAGACAACATGAACTCCAACGCTAACTTTCAGCAAGAAACACACGATCAGCAACAACTCCAGTGGAGAGACAAGTTGTTTACTGGCAGCTCCGGCGAAATGAGCCGGGGTTTTTCTTTAGACCAAACGCAGTTTAGTCCTCAATATAGCTCCGGCGAAAGCACGGTGACATGTCAAGGCTTGTCCACTAGTTTTCAAATGGATTCAGCAGCTTTATACGGGACTAGTCCATCAACCATATTACAAGGACTACTGGGATCACCTCATGATCATAATCAGCCACAACCGCCTTCACCTTCTATCGTTTTTCCATATCAAGCAAGTTATGGCATTAACTCGACCGAGCTATTGCCTTCTTGGTCTAATAAGGTCCCTCAGTTTCTAAGAACATCACCTCCAAAACACCCTTCTAACAGTCCTCATAGCCATTTACAGTTTTCTAATAACGCTGCCTTTTGGAATGCACCTCACGAGGCAGCCATGAAAGATGTCCGGCCGACCTTTTTCCCGTCATTGCAACCACAATTTCCCACGGCACGCTTCGATGAGAAGCCAAAGAATATATCTGAAGTTCATCAGGATTCTGGTGCGGTGGTGAAGAAAAGCGGAAGTGAAGCATCCAAAAGGCCTCGAAATGAAACGTCATCAACTTTGCCAGCTTTCAAGGTGAGGAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCGCCTTTCGGAAAGACTGATACAGCCTCAGTGCTCTCTGAAGCCATTGAATATATCAAGTTCCTCCATGAACAAGTTTCTGTTTTAAGTAACCCATACATGAAAAGTGGAGCTGCCATACAACATCAGCAGAAATCTGATAAATCGAAAGACCCTGAAGGTCCCAAACATGACCTAAGAGGCCGTGGACTATGTTTGGTTCCAGTTTCGAGCACCTTCCCGGCCGCACATGAGACAACAGTTGATTTTTGGACGCCTACGTTTGGAGGAACATTCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

449

Amino Acids

49.29

Weight (kDa)

6.4

Isoelectric Point (pI)

57.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20640 AT3G20640 AT3G20640 AT3G20640
fragaria_vesca	FvH4_3g21440
malus_domestica	MD03G1216400.v1.1 MD11G1230700.v1.1
prunus_persica	Prupe.4G196600_v2.0.a1 Prupe.4G196600_v2.0.a1
pyrus_communis	pycom03g16440 pycom11g20430
rosa_chinensis	RchiOBHm_Chr5g0036871
rosa_laevigata	RLG00000033729
rosa_multiflora	Rmu_sc0000399.1_g000019
rosa_roxburghii	Rroxscaffold_1G00044130
rosa_rugosa	Rorug05G0158100
rosa_samantha	Rh5AG250700 Rh5BG252300 Rh5CG284300 Rh5DG260800
rosa_wichuraiana	Rw5G023060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1060
AciI	CCGC	4 cut(s)	635, 938, 954, 1290
AclWI	GGATC	3 cut(s)	194, 236, 613
AcoI	YGGCCR	2 cut(s)	842, 1287
AcuI	CTGAAG	3 cut(s)	936, 1125, 1242
AcyI	GRCGYC	1 cut(s)	1319
AfaI	GTAC	1 cut(s)	178
AfiI	CCNNNNNNNGG	2 cut(s)	1060, 1328
AflIII	ACRYGT	1 cut(s)	518
AgsI	TTSAA	7 cut(s)	62, 87, 134, 342, 545, 1012, 1115
AhlI	ACTAGT	2 cut(s)	536, 572
AjuI	GAANNNNNNNTTGG	4 cut(s)	291, 323, 739, 771
AloI	GAACNNNNNNTCC	2 cut(s)	727, 759
Alw21I	GWGCWC	2 cut(s)	1101, 1280
Alw26I	GTCTC	4 cut(s)	175, 320, 411, 1292
AlwI	GGATC	3 cut(s)	194, 236, 613
AlwNI	CAGNNNCTG	1 cut(s)	211
AoxI	GGCC	5 cut(s)	321, 842, 974, 1246, 1287
ApeKI	GCWGC	6 cut(s)	211, 435, 557, 797, 824, 1178
AspS9I	GGNCC	2 cut(s)	718, 1226
AsuC2I	CCSGG	3 cut(s)	163, 455, 1286
AsuHPI	GGTGA	7 cut(s)	326, 526, 600, 633, 732, 955, 1027
AvaII	GGWCC	2 cut(s)	718, 1226
BauI	CACGAG	1 cut(s)	818
BbsI	GAAGAC	3 cut(s)	75, 141, 184
Bbv12I	GWGCWC	2 cut(s)	1101, 1280
BbvI	GCAGC	6 cut(s)	198, 447, 569, 784, 836, 1165
BccI	CCATC	4 cut(s)	108, 253, 586, 1024
BceAI	ACGGC	2 cut(s)	897, 1233
BclI	TGATCA	1 cut(s)	616
BcnI	CCSGG	3 cut(s)	163, 455, 1286
BcoDI	GTCTC	4 cut(s)	175, 320, 411, 1292
BcuI	ACTAGT	2 cut(s)	536, 572
BfaI	CTAG	3 cut(s)	246, 537, 573
BisI	GCNGC	7 cut(s)	212, 436, 558, 798, 825, 1179, 1290
BlsI	GCNGC	7 cut(s)	213, 437, 559, 799, 826, 1180, 1291
Bme1390I	CCNGG	3 cut(s)	163, 455, 1286
Bme18I	GGWCC	2 cut(s)	718, 1226
BmgT120I	GGNCC	2 cut(s)	718, 1226
BmiI	GGNNCC	4 cut(s)	296, 720, 1228, 1266
BmrFI	CCNGG	3 cut(s)	163, 455, 1286
BmrI	ACTGGG	2 cut(s)	33, 611
BmsI	GCATC	1 cut(s)	974
BmuI	ACTGGG	2 cut(s)	33, 611
BpiI	GAAGAC	3 cut(s)	75, 141, 184
BpmI	CTGGAG	1 cut(s)	392
BpuMI	CCSGG	3 cut(s)	163, 455, 1286
BsaBI	GATNNNNATC	2 cut(s)	12, 621
BsaHI	GRCGYC	1 cut(s)	1319
BsaI	GGTCTC	2 cut(s)	175, 320
BsaJI	CCNNGG	3 cut(s)	454, 879, 1249
BsaXI	ACNNNNNCTCC	4 cut(s)	347, 377, 727, 757
Bsc4I	CCNNNNNNNGG	2 cut(s)	1060, 1328
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	7 cut(s)	28, 35, 330, 409, 436, 606, 1268
Bse3DI	GCAATG	1 cut(s)	860
Bse8I	GATNNNNATC	2 cut(s)	12, 621
BseDI	CCNNGG	3 cut(s)	454, 879, 1249
BseGI	GGATG	2 cut(s)	119, 965
BseJI	GATNNNNATC	2 cut(s)	12, 621
BseLI	CCNNNNNNNGG	2 cut(s)	1060, 1328
BseMI	GCAATG	1 cut(s)	860
BseMII	CTCAG	3 cut(s)	293, 737, 1107
BseNI	ACTGG	7 cut(s)	28, 35, 330, 409, 436, 606, 1268
BseX3I	CGGCCG	2 cut(s)	842, 1287
BseXI	GCAGC	6 cut(s)	198, 447, 569, 784, 836, 1165
BsgI	GTGCAG	1 cut(s)	1032
Bsh1285I	CGRYCG	3 cut(s)	690, 845, 1290
BshFI	GGCC	5 cut(s)	323, 844, 976, 1248, 1289
BsiEI	CGRYCG	3 cut(s)	690, 845, 1290
BsiHKAI	GWGCWC	2 cut(s)	1101, 1280
BsiSI	CCGG	7 cut(s)	66, 162, 441, 454, 501, 841, 1286
BslFI	GGGAC	5 cut(s)	50, 583, 704, 1049, 1212
BslI	CCNNNNNNNGG	2 cut(s)	1060, 1328
BsmAI	GTCTC	4 cut(s)	175, 320, 411, 1292
BsmFI	GGGAC	5 cut(s)	50, 583, 704, 1049, 1212
BsmI	GAATGC	1 cut(s)	814
BsnI	GGCC	5 cut(s)	323, 844, 976, 1248, 1289
Bso31I	GGTCTC	2 cut(s)	175, 320
Bsp1286I	GDGCHC	2 cut(s)	1101, 1280
Bsp143I	GATC	5 cut(s)	199, 241, 394, 605, 616
BspACI	CCGC	4 cut(s)	635, 938, 954, 1290
BspANI	GGCC	5 cut(s)	323, 844, 976, 1248, 1289
BspCNI	CTCAG	3 cut(s)	292, 736, 1106
BspHI	TCATGA	1 cut(s)	613
BspLI	GGNNCC	4 cut(s)	296, 720, 1228, 1266
BspPI	GGATC	3 cut(s)	194, 236, 613
BspTNI	GGTCTC	2 cut(s)	175, 320
BsrDI	GCAATG	1 cut(s)	860
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	7 cut(s)	28, 35, 330, 409, 436, 606, 1268
BssAI	RCCGGY	1 cut(s)	65
BssECI	CCNNGG	3 cut(s)	454, 879, 1249
BssMI	GATC	5 cut(s)	199, 241, 394, 605, 616
BssNI	GRCGYC	1 cut(s)	1319
BssSI	CACGAG	1 cut(s)	818
Bst2BI	CACGAG	1 cut(s)	818
Bst4CI	ACNGT	5 cut(s)	81, 514, 764, 783, 1306
BstACI	GRCGYC	1 cut(s)	1319
BstC8I	GCNNGC	3 cut(s)	251, 886, 1005
BstDEI	CTNAG	5 cut(s)	279, 723, 731, 1093, 1241
BstDSI	CCRYGG	2 cut(s)	879, 1249
BstF5I	GGATG	2 cut(s)	119, 965
BstKTI	GATC	5 cut(s)	202, 244, 397, 608, 619
BstMAI	GTCTC	4 cut(s)	175, 320, 411, 1292
BstMBI	GATC	5 cut(s)	199, 241, 394, 605, 616
BstMCI	CGRYCG	3 cut(s)	690, 845, 1290
BstMWI	GCNNNNNNNGC	6 cut(s)	96, 105, 246, 441, 450, 634
BstNSI	RCATGY	1 cut(s)	522
BstSCI	CCNGG	3 cut(s)	161, 453, 1284
BstV1I	GCAGC	6 cut(s)	198, 447, 569, 784, 836, 1165
BstV2I	GAAGAC	3 cut(s)	75, 141, 184
BstZI	CGGCCG	2 cut(s)	842, 1287
BsuRI	GGCC	5 cut(s)	323, 844, 976, 1248, 1289
BtgI	CCRYGG	2 cut(s)	879, 1249
BtgZI	GCGATG	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	119, 965
BtsI	GCAGTG	1 cut(s)	1044
BtsIMutI	CAGTG	3 cut(s)	416, 1044, 1101
Cac8I	GCNNGC	3 cut(s)	251, 886, 1005
CaiI	CAGNNNCTG	1 cut(s)	211
CciI	TCATGA	1 cut(s)	613
Cfr10I	RCCGGY	1 cut(s)	65
Cfr13I	GGNCC	2 cut(s)	718, 1226
CseI	GACGC	1 cut(s)	1327
Csp6I	GTAC	1 cut(s)	177
CspCI	CAANNNNNGTGG	2 cut(s)	392, 427
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	5 cut(s)	279, 723, 731, 1093, 1241
DpnI	GATC	5 cut(s)	201, 243, 396, 607, 618
DpnII	GATC	5 cut(s)	199, 241, 394, 605, 616
EaeI	YGGCCR	2 cut(s)	842, 1287
EagI	CGGCCG	2 cut(s)	842, 1287
EclXI	CGGCCG	2 cut(s)	842, 1287
Eco147I	AGGCCT	1 cut(s)	976
Eco31I	GGTCTC	2 cut(s)	175, 320
Eco47I	GGWCC	2 cut(s)	718, 1226
Eco52I	CGGCCG	2 cut(s)	842, 1287
Eco57I	CTGAAG	3 cut(s)	936, 1125, 1242
EcoO109I	RGGNCCY	2 cut(s)	718, 1226
FaqI	GGGAC	5 cut(s)	50, 583, 704, 1049, 1212
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	7 cut(s)	212, 436, 558, 798, 825, 1179, 1290
FokI	GGATG	2 cut(s)	126, 952
Fsp4HI	GCNGC	7 cut(s)	212, 436, 558, 798, 825, 1179, 1290
FspBI	CTAG	3 cut(s)	246, 537, 573
GluI	GCNGC	7 cut(s)	212, 436, 558, 798, 825, 1179, 1290
GsuI	CTGGAG	1 cut(s)	392
HaeIII	GGCC	5 cut(s)	323, 844, 976, 1248, 1289
HapII	CCGG	7 cut(s)	66, 162, 441, 454, 501, 841, 1286
HgaI	GACGC	1 cut(s)	1327
Hin1I	GRCGYC	1 cut(s)	1319
HindIII	AAGCTT	1 cut(s)	106
HinfI	GANTC	6 cut(s)	38, 158, 224, 551, 929, 1041
HpaII	CCGG	7 cut(s)	66, 162, 441, 454, 501, 841, 1286
HphI	GGTGA	7 cut(s)	326, 526, 600, 633, 732, 955, 1027
Hpy166II	GTNNAC	3 cut(s)	429, 534, 1253
Hpy188I	TCNGA	7 cut(s)	18, 223, 916, 1076, 1105, 1204, 1343
Hpy188III	TCNNGA	4 cut(s)	48, 614, 818, 926
Hpy8I	GTNNAC	3 cut(s)	429, 534, 1253
HpyAV	CCTTC	7 cut(s)	313, 648, 654, 711, 765, 1217, 1291
HpyCH4III	ACNGT	5 cut(s)	81, 514, 764, 783, 1306
HpyCH4IV	ACGT	2 cut(s)	989, 1325
HpyCH4V	TGCA	5 cut(s)	214, 253, 812, 865, 1049
HpyF10VI	GCNNNNNNNGC	6 cut(s)	96, 105, 246, 441, 450, 634
HpyF3I	CTNAG	5 cut(s)	279, 723, 731, 1093, 1241
HpySE526I	ACGT	2 cut(s)	989, 1325
Hsp92I	GRCGYC	1 cut(s)	1319
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	5 cut(s)	199, 241, 394, 605, 616
LmnI	GCTCC	3 cut(s)	443, 503, 1175
Lsp1109I	GCAGC	6 cut(s)	198, 447, 569, 784, 836, 1165
LweI	GCATC	1 cut(s)	974
MaeI	CTAG	3 cut(s)	246, 537, 573
MaeII	ACGT	2 cut(s)	989, 1325
MaeIII	GTNAC	2 cut(s)	514, 1154
MalI	GATC	5 cut(s)	201, 243, 396, 607, 618
MboI	GATC	5 cut(s)	199, 241, 394, 605, 616
MboII	GAAGA	7 cut(s)	75, 141, 174, 184, 219, 958, 1039
MfeI	CAATTG	1 cut(s)	1058
MhlI	GDGCHC	2 cut(s)	1101, 1280
MluCI	AATT	2 cut(s)	872, 1058
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	2 cut(s)	390, 1078
MseI	TTAA	3 cut(s)	273, 681, 1151
MspI	CCGG	7 cut(s)	66, 162, 441, 454, 501, 841, 1286
MspR9I	CCNGG	3 cut(s)	163, 455, 1286
MunI	CAATTG	1 cut(s)	1058
Mva1269I	GAATGC	1 cut(s)	814
MwoI	GCNNNNNNNGC	6 cut(s)	96, 105, 246, 441, 450, 634
NciI	CCSGG	3 cut(s)	163, 455, 1286
NdeII	GATC	5 cut(s)	199, 241, 394, 605, 616
NlaIV	GGNNCC	4 cut(s)	296, 720, 1228, 1266
NmeAIII	GCCGAG	1 cut(s)	349
NmuCI	GTSAC	1 cut(s)	514
NspI	RCATGY	1 cut(s)	522
PagI	TCATGA	1 cut(s)	613
PceI	AGGCCT	1 cut(s)	976
PciI	ACATGT	1 cut(s)	518
PctI	GAATGC	1 cut(s)	814
PfeI	GAWTC	5 cut(s)	158, 224, 551, 929, 1041
PflMI	CCANNNNNTGG	1 cut(s)	1060
PkrI	GCNGC	7 cut(s)	213, 437, 559, 799, 826, 1180, 1291
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PpuMI	RGGWCCY	2 cut(s)	718, 1226
PscI	ACATGT	1 cut(s)	518
Psp5II	RGGWCCY	2 cut(s)	718, 1226
PspN4I	GGNNCC	4 cut(s)	296, 720, 1228, 1266
PspPI	GGNCC	2 cut(s)	718, 1226
PspPPI	RGGWCCY	2 cut(s)	718, 1226
PstNI	CAGNNNCTG	1 cut(s)	211
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	273, 681, 1151
SatI	GCNGC	7 cut(s)	212, 436, 558, 798, 825, 1179, 1290
Sau3AI	GATC	5 cut(s)	199, 241, 394, 605, 616
Sau96I	GGNCC	2 cut(s)	718, 1226
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	3 cut(s)	163, 455, 1286
SduI	GDGCHC	2 cut(s)	1101, 1280
SfaNI	GCATC	1 cut(s)	974
SinI	GGWCC	2 cut(s)	718, 1226
SpeI	ACTAGT	2 cut(s)	536, 572
Sse9I	AATT	2 cut(s)	872, 1058
SseBI	AGGCCT	1 cut(s)	976
SsiI	CCGC	4 cut(s)	635, 938, 954, 1290
SspI	AATATT	1 cut(s)	345
SspMI	CTAG	3 cut(s)	246, 537, 573
StuI	AGGCCT	1 cut(s)	976
StyD4I	CCNGG	3 cut(s)	161, 453, 1284
TaaI	ACNGT	5 cut(s)	81, 514, 764, 783, 1306
TaiI	ACGT	2 cut(s)	992, 1328
TaqI	TCGA	6 cut(s)	230, 686, 891, 979, 1211, 1274
TaqII	GACCGA	2 cut(s)	157, 704
TasI	AATT	2 cut(s)	872, 1058
TauI	GCSGC	1 cut(s)	1292
TfiI	GAWTC	5 cut(s)	158, 224, 551, 929, 1041
Tru1I	TTAA	3 cut(s)	273, 681, 1151
Tru9I	TTAA	3 cut(s)	273, 681, 1151
TscAI	CASTG	3 cut(s)	416, 1051, 1101
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	6 cut(s)	211, 435, 557, 797, 824, 1178
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	8 cut(s)	24, 152, 374, 845, 911, 999, 1149, 1181
TspRI	CASTG	3 cut(s)	416, 1051, 1101
Van91I	CCANNNNNTGG	1 cut(s)	1060
VpaK11BI	GGWCC	2 cut(s)	718, 1226
XceI	RCATGY	1 cut(s)	522
XspI	CTAG	3 cut(s)	246, 537, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.