pycom11g20430

transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
23412629 .. 23415042
2414 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g20430.4

Sequence Viewer

Length: 1368 bp
ATGGCAGATGAATTTCAGACACCTGGGAACTGGTGGGACTCATCGTCAAGAACCAGGTTCGAGACGGGGGCATCGCCCTCGTCTTCGAGCCTGAATACCTTGGGAAGCTTTGGATGGCAACCTGACATAGTTGACATCAAGGCTAGGTCTTCTATGGATTCCGGGTCGGTCTCAGGTACTTCATCTATGGTATTTCATGATACTCACAAGCTGCAAGAAGGGACTGATTCCGCGGGCGGCGGCAGCGACCCCAACTTGCATATGATGGGTTTAGGGCTTTCCTCTCAGGCCACAGATTGGAACCAAGCTTTATTTCGCGGTGAGAAGGAGACTAGTTTTCGATCGATCCTACAAGAAAACATGAACTCCAATACTGCTAACTTTCAGCAAGAAAGTGACCAACAGCTCCAATGGAGGGATAAGTTGTTTGCTGGTGGTTGTGGGGATTCTTCTAACAACGAGTTTAAGCAAATGACCCGGGGATTTTCTTTAGATCAAACACAGTTTAGTCCTCGGTACAGCTCCGGTGAAAGCACGGTGACATGTCAAGGATTGCCTTCTGGTTTTCAAATGGATTCAGCATCAGCAGCTCTGTATGGAAGCCCATCTACAATATTGCAAGGACTATTGGGACCTCATCATGATAATCAACCTCAGCAGCCTAGTTCAGCAATCATCAATTTTCCTTATCAAGGAAATTATGGAATTAATAACTCTAGTGAGCTATTGCCGTCTTGGTCTAAAGTACCCCAGTTTCTAAGAACATCACCTCCCAAACAACCTCCTCAGAGCCATTTACAATTTTCTAATGATGCTCCCTTTTGGAATGCACCTCATGAGGCCGCCATGAAAGACGTCCGGCCAAGCTTTTTCCCCTCGTTGCAGCCACAATTTCCCACGGCACGATTTGATGAAAAACCGAAGAATATATCGGAAGTTCAGGAATCGGGTGCAGTGGGCAAGAAAAGTGGGAGTGAAGCAGCATCCAAAAGGCCTCGGAATGAAACCTCATCACCTTTGCCAGCTTTTAAGGTGAGGAAAGAGAAGATGGGGGACAGAATCACTGCCCTCCAACAATTAGTTTCACCTTTCGGAAAGACTGATACAGCCTCGGTACTCTCTGAAGCCATCGAATATATCAAGTTCCTCCATGAACAAGTTAATGTTTTAAGCACCCCATACATGAAGAGTGGAGCTGTCATACAACACCAGCAGCAGAATTCTGATAAAGTTAAGGACCCCGATGGTCCAAAGCAAGATCTTAGAAGCAGAGGGCTGTGTTTAGTACCGGTTTCAAGCACATTCCCGGTGACACATGAGACAACAGTTGATTTTTGGACACCTACATTTGGAGGGACTTTCAGATAG

Protein Analysis

456

Amino Acids

49.94

Weight (kDa)

5.96

Isoelectric Point (pI)

56.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010446)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 858
AccB7I CCANNNNNTGG 1 cut(s) 297
AccII CGCG 2 cut(s) 233, 318
AciI CCGC 6 cut(s) 231, 233, 237, 240, 318, 843
AclWI GGATC 1 cut(s) 340
AcoI YGGCCR 1 cut(s) 860
AcsI RAATTY 2 cut(s) 11, 1219
AcuI CTGAAG 1 cut(s) 1143
AcyI GRCGYC 1 cut(s) 855
AfaI GTAC 5 cut(s) 178, 518, 747, 1116, 1287
AfiI CCNNNNNNNGG 4 cut(s) 297, 415, 692, 1349
AflIII ACRYGT 1 cut(s) 542
AgeI ACCGGT 1 cut(s) 1288
AgsI TTSAA 2 cut(s) 569, 1296
AhdI GACNNNNNGTC 1 cut(s) 43
AhlI ACTAGT 1 cut(s) 332
AjnI CCWGG 2 cut(s) 22, 53
AjuI GAANNNNNNNTTGG 2 cut(s) 297, 329
AloI GAACNNNNNNTCC 2 cut(s) 754, 786
Alw26I GTCTC 4 cut(s) 56, 175, 323, 1313
AlwI GGATC 1 cut(s) 340
Ama87I CYCGRG 1 cut(s) 477
AoxI GGCC 4 cut(s) 288, 840, 860, 992
ApeKI GCWGC 7 cut(s) 211, 243, 587, 658, 883, 980, 1213
ApoI RAATTY 2 cut(s) 11, 1219
AseI ATTAAT 1 cut(s) 708
AsiGI ACCGGT 1 cut(s) 1288
AspS9I GGNCC 3 cut(s) 632, 1237, 1247
AsuC2I CCSGG 4 cut(s) 163, 478, 479, 1307
AsuHPI GGTGA 8 cut(s) 332, 539, 550, 759, 1005, 1045, 1077, 1321
AvaI CYCGRG 1 cut(s) 477
AvaII GGWCC 3 cut(s) 632, 1237, 1247
BarI GAAGNNNNNNTAC 2 cut(s) 592, 624
BbsI GAAGAC 2 cut(s) 75, 141
BbvCI CCTCAGC 1 cut(s) 654
BbvI GCAGC 7 cut(s) 198, 255, 599, 670, 895, 992, 1225
BccI CCATC 6 cut(s) 108, 259, 613, 1042, 1136, 1238
BceAI ACGGC 2 cut(s) 715, 915
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BciT130I CCWGG 2 cut(s) 24, 55
BcnI CCSGG 4 cut(s) 163, 478, 479, 1307
BcoDI GTCTC 4 cut(s) 56, 175, 323, 1313
BcuI ACTAGT 1 cut(s) 332
BfaI CTAG 4 cut(s) 144, 333, 663, 717
BglII AGATCT 1 cut(s) 1258
Bme1390I CCNGG 6 cut(s) 24, 55, 163, 478, 479, 1307
Bme18I GGWCC 3 cut(s) 632, 1237, 1247
BmeRI GACNNNNNGTC 1 cut(s) 43
BmeT110I CYCGRG 1 cut(s) 477
BmgT120I GGNCC 3 cut(s) 632, 1237, 1247
BmiI GGNNCC 3 cut(s) 302, 633, 1239
BmrFI CCNGG 6 cut(s) 24, 55, 163, 478, 479, 1307
BmrI ACTGGG 1 cut(s) 745
BmsI GCATC 4 cut(s) 80, 590, 802, 992
BmuI ACTGGG 1 cut(s) 745
BpiI GAAGAC 2 cut(s) 75, 141
Bpu10I CCTNAGC 1 cut(s) 654
BpuMI CCSGG 4 cut(s) 163, 478, 479, 1307
Bsa29I ATCGAT 1 cut(s) 344
BsaHI GRCGYC 1 cut(s) 855
BsaI GGTCTC 1 cut(s) 175
BsaJI CCNNGG 9 cut(s) 23, 99, 231, 477, 478, 512, 897, 995, 1110
BsaWI WCCGGW 2 cut(s) 524, 1288
BsaXI ACNNNNNCTCC 4 cut(s) 350, 380, 754, 784
Bsc4I CCNNNNNNNGG 4 cut(s) 297, 415, 692, 1349
Bse118I RCCGGY 1 cut(s) 1288
Bse1I ACTGG 2 cut(s) 35, 751
BseBI CCWGG 2 cut(s) 24, 55
BseCI ATCGAT 1 cut(s) 344
BseDI CCNNGG 9 cut(s) 23, 99, 231, 477, 478, 512, 897, 995, 1110
BseGI GGATG 2 cut(s) 119, 983
BseLI CCNNNNNNNGG 4 cut(s) 297, 415, 692, 1349
BseMII CTCAG 4 cut(s) 186, 299, 668, 800
BseNI ACTGG 2 cut(s) 35, 751
BseRI GAGGAG 1 cut(s) 774
BseXI GCAGC 7 cut(s) 198, 255, 599, 670, 895, 992, 1225
BsgI GTGCAG 1 cut(s) 972
Bsh1236I CGCG 2 cut(s) 233, 318
Bsh1285I CGRYCG 1 cut(s) 344
BshFI GGCC 4 cut(s) 290, 842, 862, 994
BshTI ACCGGT 1 cut(s) 1288
BshVI ATCGAT 1 cut(s) 344
BsiEI CGRYCG 1 cut(s) 344
BsiHKCI CYCGRG 1 cut(s) 477
BsiSI CCGG 6 cut(s) 162, 478, 525, 859, 1289, 1307
BslFI GGGAC 4 cut(s) 50, 235, 645, 1067
BslI CCNNNNNNNGG 4 cut(s) 297, 415, 692, 1349
BsmAI GTCTC 4 cut(s) 56, 175, 323, 1313
BsmBI CGTCTC 1 cut(s) 56
BsmFI GGGAC 4 cut(s) 50, 235, 645, 1067
BsmI GAATGC 1 cut(s) 832
BsnI GGCC 4 cut(s) 290, 842, 862, 994
Bso31I GGTCTC 1 cut(s) 175
BsoBI CYCGRG 1 cut(s) 477
Bsp143I GATC 4 cut(s) 341, 345, 493, 1258
BspACI CCGC 6 cut(s) 231, 233, 237, 240, 318, 843
BspANI GGCC 4 cut(s) 290, 842, 862, 994
BspCNI CTCAG 4 cut(s) 185, 298, 667, 799
BspDI ATCGAT 1 cut(s) 344
BspFNI CGCG 2 cut(s) 233, 318
BspHI TCATGA 3 cut(s) 196, 640, 835
BspLI GGNNCC 3 cut(s) 302, 633, 1239
BspPI GGATC 1 cut(s) 340
BspTNI GGTCTC 1 cut(s) 175
BsrFI RCCGGY 1 cut(s) 1288
BsrI ACTGG 2 cut(s) 35, 751
BssAI RCCGGY 1 cut(s) 1288
BssECI CCNNGG 9 cut(s) 23, 99, 231, 477, 478, 512, 897, 995, 1110
BssMI GATC 4 cut(s) 341, 345, 493, 1258
BssNI GRCGYC 1 cut(s) 855
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 2 cut(s) 24, 55
Bst4CI ACNGT 3 cut(s) 504, 538, 1327
Bst6I CTCTTC 1 cut(s) 1181
BstACI GRCGYC 1 cut(s) 855
BstC8I GCNNGC 2 cut(s) 235, 1023
BstDEI CTNAG 6 cut(s) 172, 285, 654, 758, 786, 1262
BstDSI CCRYGG 2 cut(s) 231, 897
BstENI CCTNNNNNAGG 1 cut(s) 690
BstF5I GGATG 2 cut(s) 119, 983
BstFNI CGCG 2 cut(s) 233, 318
BstKTI GATC 4 cut(s) 344, 348, 496, 1261
BstMAI GTCTC 4 cut(s) 56, 175, 323, 1313
BstMBI GATC 4 cut(s) 341, 345, 493, 1258
BstMCI CGRYCG 1 cut(s) 344
BstMWI GCNNNNNNNGC 2 cut(s) 243, 587
BstNI CCWGG 2 cut(s) 24, 55
BstNSI RCATGY 1 cut(s) 546
BstSCI CCNGG 6 cut(s) 22, 53, 161, 476, 477, 1305
BstUI CGCG 2 cut(s) 233, 318
BstV1I GCAGC 7 cut(s) 198, 255, 599, 670, 895, 992, 1225
BstV2I GAAGAC 2 cut(s) 75, 141
BstX2I RGATCY 1 cut(s) 1258
BstYI RGATCY 1 cut(s) 1258
Bsu15I ATCGAT 1 cut(s) 344
BsuRI GGCC 4 cut(s) 290, 842, 862, 994
BsuTUI ATCGAT 1 cut(s) 344
BtgI CCRYGG 2 cut(s) 231, 897
BtgZI GCGATG 1 cut(s) 57
BtsCI GGATG 2 cut(s) 119, 983
BtsI GCAGTG 2 cut(s) 960, 1062
BtsIMutI CAGTG 2 cut(s) 960, 1062
Cac8I GCNNGC 2 cut(s) 235, 1023
CciI TCATGA 3 cut(s) 196, 640, 835
Cfr10I RCCGGY 1 cut(s) 1288
Cfr13I GGNCC 3 cut(s) 632, 1237, 1247
Cfr42I CCGCGG 1 cut(s) 234
Cfr9I CCCGGG 1 cut(s) 477
ClaI ATCGAT 1 cut(s) 344
CsiI ACCWGGT 1 cut(s) 53
Csp6I GTAC 5 cut(s) 177, 517, 746, 1115, 1286
CspAI ACCGGT 1 cut(s) 1288
CspCI CAANNNNNGTGG 2 cut(s) 949, 984
CviAII CATG 9 cut(s) 197, 361, 543, 641, 836, 847, 1151, 1183, 1316
CviQI GTAC 5 cut(s) 177, 517, 746, 1115, 1286
DdeI CTNAG 6 cut(s) 172, 285, 654, 758, 786, 1262
DpnI GATC 4 cut(s) 343, 347, 495, 1260
DpnII GATC 4 cut(s) 341, 345, 493, 1258
DriI GACNNNNNGTC 1 cut(s) 43
EaeI YGGCCR 1 cut(s) 860
Eam1104I CTCTTC 1 cut(s) 1181
Eam1105I GACNNNNNGTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 1181
Eco130I CCWWGG 1 cut(s) 99
Eco147I AGGCCT 1 cut(s) 994
Eco31I GGTCTC 1 cut(s) 175
Eco47I GGWCC 3 cut(s) 632, 1237, 1247
Eco57I CTGAAG 1 cut(s) 1143
Eco88I CYCGRG 1 cut(s) 477
EcoNI CCTNNNNNAGG 1 cut(s) 690
EcoO109I RGGNCCY 2 cut(s) 632, 1237
EcoRI GAATTC 1 cut(s) 1219
EcoRII CCWGG 2 cut(s) 22, 53
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 9 cut(s) 200, 364, 546, 644, 839, 850, 1154, 1186, 1319
FaqI GGGAC 4 cut(s) 50, 235, 645, 1067
FatI CATG 9 cut(s) 196, 360, 542, 640, 835, 846, 1150, 1182, 1315
FauI CCCGC 1 cut(s) 226
FauNDI CATATG 1 cut(s) 261
FokI GGATG 2 cut(s) 126, 970
FspBI CTAG 4 cut(s) 144, 333, 663, 717
HaeIII GGCC 4 cut(s) 290, 842, 862, 994
HapII CCGG 6 cut(s) 162, 478, 525, 859, 1289, 1307
Hin1I GRCGYC 1 cut(s) 855
Hin1II CATG 9 cut(s) 200, 364, 546, 644, 839, 850, 1154, 1186, 1319
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HindIII AAGCTT 3 cut(s) 106, 306, 865
HinfI GANTC 7 cut(s) 38, 158, 227, 446, 575, 944, 1059
HpaII CCGG 6 cut(s) 162, 478, 525, 859, 1289, 1307
HphI GGTGA 8 cut(s) 332, 539, 550, 759, 1005, 1045, 1077, 1321
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 8 cut(s) 18, 789, 934, 999, 1094, 1123, 1225, 1364
Hpy188III TCNNGA 6 cut(s) 48, 61, 197, 641, 836, 941
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 3 cut(s) 212, 319, 567
HpyCH4III ACNGT 3 cut(s) 504, 538, 1327
HpyCH4IV ACGT 1 cut(s) 855
HpyCH4V TGCA 6 cut(s) 214, 259, 619, 830, 883, 953
HpyF10VI GCNNNNNNNGC 2 cut(s) 243, 587
HpyF3I CTNAG 6 cut(s) 172, 285, 654, 758, 786, 1262
HpySE526I ACGT 1 cut(s) 855
Hsp92I GRCGYC 1 cut(s) 855
Hsp92II CATG 9 cut(s) 200, 364, 546, 644, 839, 850, 1154, 1186, 1319
KspI CCGCGG 1 cut(s) 234
Kzo9I GATC 4 cut(s) 341, 345, 493, 1258
LmnI GCTCC 4 cut(s) 411, 527, 820, 1193
Lsp1109I GCAGC 7 cut(s) 198, 255, 599, 670, 895, 992, 1225
LweI GCATC 4 cut(s) 80, 590, 802, 992
MabI ACCWGGT 1 cut(s) 53
MaeI CTAG 4 cut(s) 144, 333, 663, 717
MaeII ACGT 1 cut(s) 855
MaeIII GTNAC 3 cut(s) 395, 538, 1309
MalI GATC 4 cut(s) 343, 347, 495, 1260
MboI GATC 4 cut(s) 341, 345, 493, 1258
MboII GAAGA 6 cut(s) 75, 141, 441, 934, 1057, 1198
MflI RGATCY 1 cut(s) 1258
MluCI AATT 8 cut(s) 11, 679, 697, 705, 800, 890, 1076, 1219
MlyI GAGTC 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 1096
MseI TTAA 6 cut(s) 465, 708, 1029, 1161, 1169, 1233
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 6 cut(s) 162, 478, 525, 859, 1289, 1307
MspR9I CCNGG 6 cut(s) 24, 55, 163, 478, 479, 1307
Mva1269I GAATGC 1 cut(s) 832
MvaI CCWGG 2 cut(s) 24, 55
MvnI CGCG 2 cut(s) 233, 318
MwoI GCNNNNNNNGC 2 cut(s) 243, 587
NciI CCSGG 4 cut(s) 163, 478, 479, 1307
NdeI CATATG 1 cut(s) 261
NdeII GATC 4 cut(s) 341, 345, 493, 1258
NlaIII CATG 9 cut(s) 200, 364, 546, 644, 839, 850, 1154, 1186, 1319
NlaIV GGNNCC 3 cut(s) 302, 633, 1239
NmuCI GTSAC 3 cut(s) 395, 538, 1309
NspI RCATGY 1 cut(s) 546
PagI TCATGA 3 cut(s) 196, 640, 835
PceI AGGCCT 1 cut(s) 994
PciI ACATGT 1 cut(s) 542
PctI GAATGC 1 cut(s) 832
PfeI GAWTC 6 cut(s) 158, 227, 446, 575, 944, 1059
PflMI CCANNNNNTGG 1 cut(s) 297
PinAI ACCGGT 1 cut(s) 1288
Ple19I CGATCG 1 cut(s) 344
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
PpuMI RGGWCCY 2 cut(s) 632, 1237
PscI ACATGT 1 cut(s) 542
PshBI ATTAAT 1 cut(s) 708
Psp5II RGGWCCY 2 cut(s) 632, 1237
Psp6I CCWGG 2 cut(s) 22, 53
PspGI CCWGG 2 cut(s) 22, 53
PspN4I GGNNCC 3 cut(s) 302, 633, 1239
PspPI GGNCC 3 cut(s) 632, 1237, 1247
PspPPI RGGWCCY 2 cut(s) 632, 1237
PsuI RGATCY 1 cut(s) 1258
PvuI CGATCG 1 cut(s) 344
RsaI GTAC 5 cut(s) 178, 518, 747, 1116, 1287
RsaNI GTAC 5 cut(s) 177, 517, 746, 1115, 1286
SacII CCGCGG 1 cut(s) 234
SaqAI TTAA 6 cut(s) 465, 708, 1029, 1161, 1169, 1233
Sau3AI GATC 4 cut(s) 341, 345, 493, 1258
Sau96I GGNCC 3 cut(s) 632, 1237, 1247
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 6 cut(s) 24, 55, 163, 478, 479, 1307
SexAI ACCWGGT 1 cut(s) 53
SfaNI GCATC 4 cut(s) 80, 590, 802, 992
Sfr303I CCGCGG 1 cut(s) 234
SgrBI CCGCGG 1 cut(s) 234
SinI GGWCC 3 cut(s) 632, 1237, 1247
SmaI CCCGGG 1 cut(s) 479
SpeI ACTAGT 1 cut(s) 332
Sse9I AATT 8 cut(s) 11, 679, 697, 705, 800, 890, 1076, 1219
SseBI AGGCCT 1 cut(s) 994
SsiI CCGC 6 cut(s) 231, 233, 237, 240, 318, 843
SspI AATATT 1 cut(s) 615
SspMI CTAG 4 cut(s) 144, 333, 663, 717
StuI AGGCCT 1 cut(s) 994
StyD4I CCNGG 6 cut(s) 22, 53, 161, 476, 477, 1305
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 3 cut(s) 504, 538, 1327
TaiI ACGT 1 cut(s) 858
TaqI TCGA 5 cut(s) 60, 86, 340, 344, 1131
TaqII GACCGA 1 cut(s) 157
TasI AATT 8 cut(s) 11, 679, 697, 705, 800, 890, 1076, 1219
TauI GCSGC 3 cut(s) 240, 243, 845
TfiI GAWTC 6 cut(s) 158, 227, 446, 575, 944, 1059
Tru1I TTAA 6 cut(s) 465, 708, 1029, 1161, 1169, 1233
Tru9I TTAA 6 cut(s) 465, 708, 1029, 1161, 1169, 1233
TscAI CASTG 2 cut(s) 960, 1069
TseFI GTSAC 3 cut(s) 395, 538, 1309
TseI GCWGC 7 cut(s) 211, 243, 587, 658, 883, 980, 1213
Tsp45I GTSAC 3 cut(s) 395, 538, 1309
TspDTI ATGAA 9 cut(s) 24, 171, 185, 377, 863, 927, 1017, 1167, 1199
TspMI CCCGGG 1 cut(s) 477
TspRI CASTG 2 cut(s) 960, 1069
Van91I CCANNNNNTGG 1 cut(s) 297
VpaK11BI GGWCC 3 cut(s) 632, 1237, 1247
VspI ATTAAT 1 cut(s) 708
XagI CCTNNNNNAGG 1 cut(s) 690
XapI RAATTY 2 cut(s) 11, 1219
XceI RCATGY 1 cut(s) 546
XmaI CCCGGG 1 cut(s) 477
XspI CTAG 4 cut(s) 144, 333, 663, 717
ZraI GACGTC 1 cut(s) 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.