Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010446

Physical Location & Seq

Genomic Coordinates Reverse (-)

14715012 .. 14717907

Gene Structure 2896 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0158100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGAGAAGCTACCATCACAAGAAGCCACAGTCAAAGTCTCATCAATCTTCATATATCCAGTTAAATCATGTCGTGGGATTTCGGTCTCTGAAGCACCTATCACTCCTACTGGATTTCAATGGGATCGACAATGGTTAGTTATAAACGAAAAAAGGAGAGCATATACTCAAAGAGTTGAACCAAAGCTTGCTTGTGTTGAGGTACAGCTACCAAACGAGGCATTCCTAGAGGGTTGGGAACATACTAGCAGCTCTTATCTGGTATTAAAAGCACCTGGCATGGATGTACTGAAGATTTCTTTGAGTCCACCACAAGAAATAGCAGATGGAGTTTCAATATGGGAATGGTCTGGTGCTGCCTTAGATGAGGGAGCTGATGCATCAAAATGGTTTTCGGACTATCTTGGGAAACCTAGTCGACTTGTTCGCTTTAATGCAGCTTCAGAAACTAGACCTGTGAAACCTACCTTTTGGTCTCATAAACATGTGGAACCTGAATATGCTGGGGGGAAGCAAATCATGTTCTCCGACCTTTTTCCATACTTGATAGCGTCTCAGGCATCATTGGATACACTAAATGAGCATCTGAAGGACCCTGTACCAATTAACCGTTTCAGACCCAACATTCTTGTTGACGGTTGTGAACCATTTTCGGAAGATTTATGGACAGATGTCAGAATAAACAAGTTCACATTTCAATGCTGCATGCTGTGCTACCGCTGTAAGATACCTACGGTGAATCAAGAGACTGGCATTCAAGGAACCGAGCCAAATGAAACTCTCAAGAAATTTCGATCGGATGCAACTGTGTATCCATCTCGGAAACAGCAGGGAAGGGTCTACTTCGGGCAGTATCTAGTTTGCAAAGACTCTCTGATTGCTGGCGTGAAGGGAAATGTCATAAAGGTTGGAGATCTTCTTCATGTCCTCAACATGGTTTCCTCTGCTGATGAAGTTCCGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

321

Amino Acids

36.18

Weight (kDa)

6.04

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MOSC_N	PF03476	12 - 138	2.2e-32	MOSC N-terminal beta barrel domain
MOSC	PF03473	172 - 305	2.9e-22	MOSC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20640 AT3G20640 AT3G20640 AT3G20640
fragaria_vesca	FvH4_3g21440
malus_domestica	MD03G1216400.v1.1 MD11G1230700.v1.1
prunus_persica	Prupe.4G196600_v2.0.a1 Prupe.4G196600_v2.0.a1
pyrus_communis	pycom03g16440 pycom11g20430
rosa_chinensis	RchiOBHm_Chr5g0036871
rosa_laevigata	RLG00000033729
rosa_multiflora	Rmu_sc0000399.1_g000019
rosa_roxburghii	Rroxscaffold_1G00044130
rosa_rugosa	Rorug05G0158100
rosa_samantha	Rh5AG250700 Rh5BG252300 Rh5CG284300 Rh5DG260800
rosa_wichuraiana	Rw5G023060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	143
AccI	GTMKAC	2 cut(s)	418, 840
AccIII	TCCGGA	1 cut(s)	958
AciI	CCGC	1 cut(s)	718
AclWI	GGATC	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	788
AcuI	CTGAAG	4 cut(s)	111, 311, 426, 608
AfaI	GTAC	3 cut(s)	204, 288, 600
AfiI	CCNNNNNNNGG	1 cut(s)	934
AflIII	ACRYGT	1 cut(s)	484
AgsI	TTSAA	5 cut(s)	119, 179, 336, 698, 758
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	6 cut(s)	10, 187, 208, 252, 374, 440
AluI	AGCT	6 cut(s)	10, 187, 208, 252, 374, 440
Alw26I	GTCTC	5 cut(s)	43, 91, 480, 558, 740
AlwI	GGATC	1 cut(s)	132
Aor13HI	TCCGGA	1 cut(s)	958
ApeKI	GCWGC	4 cut(s)	249, 356, 437, 702
ApoI	RAATTY	1 cut(s)	788
AspS9I	GGNCC	1 cut(s)	592
AsuHPI	GGTGA	1 cut(s)	748
AvaII	GGWCC	1 cut(s)	592
BbvI	GCAGC	4 cut(s)	261, 343, 449, 689
BccI	CCATC	3 cut(s)	22, 320, 823
BciT130I	CCWGG	1 cut(s)	276
BciVI	GTATCC	2 cut(s)	562, 822
BcoDI	GTCTC	5 cut(s)	43, 91, 480, 558, 740
BfaI	CTAG	5 cut(s)	227, 246, 414, 450, 857
BfuI	GTATCC	2 cut(s)	562, 822
BglII	AGATCT	1 cut(s)	913
BisI	GCNGC	4 cut(s)	250, 357, 438, 703
BlsI	GCNGC	4 cut(s)	251, 358, 439, 704
Bme1390I	CCNGG	1 cut(s)	276
Bme18I	GGWCC	1 cut(s)	592
BmgT120I	GGNCC	1 cut(s)	592
BmiI	GGNNCC	3 cut(s)	492, 594, 763
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	5 cut(s)	367, 389, 569, 592, 790
BoxI	GACNNNNGTC	1 cut(s)	671
BpuEI	CTTGAG	1 cut(s)	767
BsaI	GGTCTC	2 cut(s)	91, 480
BsaWI	WCCGGW	1 cut(s)	958
Bsc4I	CCNNNNNNNGG	1 cut(s)	934
Bse1I	ACTGG	3 cut(s)	59, 115, 754
BseAI	TCCGGA	1 cut(s)	958
BseBI	CCWGG	1 cut(s)	276
BseGI	GGATG	2 cut(s)	289, 805
BseLI	CCNNNNNNNGG	1 cut(s)	934
BseMII	CTCAG	1 cut(s)	569
BseNI	ACTGG	3 cut(s)	59, 115, 754
BseXI	GCAGC	4 cut(s)	261, 343, 449, 689
BseYI	CCCAGC	1 cut(s)	503
Bsh1285I	CGRYCG	1 cut(s)	797
BsiEI	CGRYCG	1 cut(s)	797
BsiSI	CCGG	1 cut(s)	959
BslI	CCNNNNNNNGG	1 cut(s)	934
BsmAI	GTCTC	5 cut(s)	43, 91, 480, 558, 740
BsmBI	CGTCTC	1 cut(s)	558
BsmI	GAATGC	2 cut(s)	221, 753
Bso31I	GGTCTC	2 cut(s)	91, 480
Bsp13I	TCCGGA	1 cut(s)	958
Bsp143I	GATC	3 cut(s)	124, 794, 913
BspACI	CCGC	1 cut(s)	718
BspCNI	CTCAG	1 cut(s)	568
BspEI	TCCGGA	1 cut(s)	958
BspLI	GGNNCC	3 cut(s)	492, 594, 763
BspPI	GGATC	1 cut(s)	132
BspTNI	GGTCTC	2 cut(s)	91, 480
BsrI	ACTGG	3 cut(s)	59, 115, 754
BssMI	GATC	3 cut(s)	124, 794, 913
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	5 cut(s)	31, 611, 638, 736, 808
BstAPI	GCANNNNNTGC	1 cut(s)	711
BstC8I	GCNNGC	3 cut(s)	189, 707, 883
BstDEI	CTNAG	2 cut(s)	361, 555
BstF5I	GGATG	2 cut(s)	289, 805
BstKTI	GATC	3 cut(s)	127, 797, 916
BstMAI	GTCTC	5 cut(s)	43, 91, 480, 558, 740
BstMBI	GATC	3 cut(s)	124, 794, 913
BstMCI	CGRYCG	1 cut(s)	797
BstMWI	GCNNNNNNNGC	2 cut(s)	557, 711
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	2 cut(s)	488, 709
BstPAI	GACNNNNGTC	1 cut(s)	671
BstSCI	CCNGG	1 cut(s)	274
BstV1I	GCAGC	4 cut(s)	261, 343, 449, 689
BstX2I	RGATCY	1 cut(s)	913
BstYI	RGATCY	1 cut(s)	913
BsuI	GTATCC	2 cut(s)	562, 822
BtsCI	GGATG	2 cut(s)	289, 805
Cac8I	GCNNGC	3 cut(s)	189, 707, 883
Cfr13I	GGNCC	1 cut(s)	592
CseI	GACGC	1 cut(s)	540
Csp6I	GTAC	3 cut(s)	203, 287, 599
CviAII	CATG	7 cut(s)	69, 280, 485, 520, 706, 923, 934
CviJI	RGCY	8 cut(s)	10, 26, 187, 208, 252, 374, 440, 769
CviKI_1	RGCY	8 cut(s)	10, 26, 187, 208, 252, 374, 440, 769
CviQI	GTAC	3 cut(s)	203, 287, 599
DdeI	CTNAG	2 cut(s)	361, 555
DpnI	GATC	3 cut(s)	126, 796, 915
DpnII	GATC	3 cut(s)	124, 794, 913
Eco31I	GGTCTC	2 cut(s)	91, 480
Eco47I	GGWCC	1 cut(s)	592
Eco57I	CTGAAG	4 cut(s)	111, 311, 426, 608
EcoO109I	RGGNCCY	1 cut(s)	592
EcoRII	CCWGG	1 cut(s)	274
EcoT22I	ATGCAT	1 cut(s)	382
Esp3I	CGTCTC	1 cut(s)	558
FaeI	CATG	7 cut(s)	72, 283, 488, 523, 709, 926, 937
FatI	CATG	7 cut(s)	68, 279, 484, 519, 705, 922, 933
FblI	GTMKAC	2 cut(s)	418, 840
Fnu4HI	GCNGC	4 cut(s)	250, 357, 438, 703
FokI	GGATG	2 cut(s)	296, 812
Fsp4HI	GCNGC	4 cut(s)	250, 357, 438, 703
FspBI	CTAG	5 cut(s)	227, 246, 414, 450, 857
GluI	GCNGC	4 cut(s)	250, 357, 438, 703
GsaI	CCCAGC	1 cut(s)	507
HapII	CCGG	1 cut(s)	959
HgaI	GACGC	1 cut(s)	540
Hin1II	CATG	7 cut(s)	72, 283, 488, 523, 709, 926, 937
HincII	GTYRAC	2 cut(s)	419, 634
HindII	GTYRAC	2 cut(s)	419, 634
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	3 cut(s)	304, 739, 869
HpaII	CCGG	1 cut(s)	959
HphI	GGTGA	1 cut(s)	748
Hpy166II	GTNNAC	6 cut(s)	308, 419, 634, 644, 690, 841
Hpy188III	TCNNGA	3 cut(s)	743, 784, 959
Hpy8I	GTNNAC	6 cut(s)	308, 419, 634, 644, 690, 841
HpyAV	CCTTC	3 cut(s)	583, 828, 883
HpyCH4III	ACNGT	5 cut(s)	31, 611, 638, 736, 808
HpyCH4V	TGCA	5 cut(s)	380, 437, 705, 803, 864
HpyF10VI	GCNNNNNNNGC	2 cut(s)	557, 711
HpyF3I	CTNAG	2 cut(s)	361, 555
Hsp92II	CATG	7 cut(s)	72, 283, 488, 523, 709, 926, 937
Kpn2I	TCCGGA	1 cut(s)	958
Kzo9I	GATC	3 cut(s)	124, 794, 913
LmnI	GCTCC	1 cut(s)	371
Lsp1109I	GCAGC	4 cut(s)	261, 343, 449, 689
LweI	GCATC	5 cut(s)	367, 389, 569, 592, 790
MaeI	CTAG	5 cut(s)	227, 246, 414, 450, 857
MalI	GATC	3 cut(s)	126, 796, 915
MboI	GATC	3 cut(s)	124, 794, 913
MboII	GAAGA	5 cut(s)	40, 304, 668, 908, 911
MflI	RGATCY	1 cut(s)	913
MluCI	AATT	2 cut(s)	603, 788
MlyI	GAGTC	2 cut(s)	313, 863
MmeI	TCCRAC	2 cut(s)	552, 889
MnlI	CCTC	6 cut(s)	193, 211, 223, 361, 938, 952
Mph1103I	ATGCAT	1 cut(s)	382
MroI	TCCGGA	1 cut(s)	958
MseI	TTAA	4 cut(s)	63, 266, 432, 606
MslI	CAYNNNNRTG	3 cut(s)	385, 483, 697
MspA1I	CMGCKG	1 cut(s)	720
MspI	CCGG	1 cut(s)	959
MspR9I	CCNGG	1 cut(s)	276
Mva1269I	GAATGC	2 cut(s)	221, 753
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	2 cut(s)	557, 711
NdeII	GATC	3 cut(s)	124, 794, 913
NlaIII	CATG	7 cut(s)	72, 283, 488, 523, 709, 926, 937
NlaIV	GGNNCC	3 cut(s)	492, 594, 763
NsiI	ATGCAT	1 cut(s)	382
NspI	RCATGY	2 cut(s)	488, 709
PaeI	GCATGC	1 cut(s)	709
PciI	ACATGT	1 cut(s)	484
PctI	GAATGC	2 cut(s)	221, 753
PfeI	GAWTC	1 cut(s)	739
PkrI	GCNGC	4 cut(s)	251, 358, 439, 704
Ple19I	CGATCG	1 cut(s)	797
PleI	GAGTC	2 cut(s)	312, 863
PpsI	GAGTC	2 cut(s)	312, 863
PpuMI	RGGWCCY	1 cut(s)	592
PscI	ACATGT	1 cut(s)	484
PshAI	GACNNNNGTC	1 cut(s)	671
PsiI	TTATAA	1 cut(s)	143
Psp5II	RGGWCCY	1 cut(s)	592
Psp6I	CCWGG	1 cut(s)	274
PspFI	CCCAGC	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	3 cut(s)	492, 594, 763
PspPI	GGNCC	1 cut(s)	592
PspPPI	RGGWCCY	1 cut(s)	592
PsuI	RGATCY	1 cut(s)	913
PvuI	CGATCG	1 cut(s)	797
RsaI	GTAC	3 cut(s)	204, 288, 600
RsaNI	GTAC	3 cut(s)	203, 287, 599
RseI	CAYNNNNRTG	3 cut(s)	385, 483, 697
SalI	GTCGAC	1 cut(s)	417
SaqAI	TTAA	4 cut(s)	63, 266, 432, 606
SatI	GCNGC	4 cut(s)	250, 357, 438, 703
Sau3AI	GATC	3 cut(s)	124, 794, 913
Sau96I	GGNCC	1 cut(s)	592
SchI	GAGTC	2 cut(s)	313, 863
ScrFI	CCNGG	1 cut(s)	276
SfaNI	GCATC	5 cut(s)	367, 389, 569, 592, 790
SinI	GGWCC	1 cut(s)	592
SmiMI	CAYNNNNRTG	3 cut(s)	385, 483, 697
SmlI	CTYRAG	1 cut(s)	782
SmoI	CTYRAG	1 cut(s)	782
SphI	GCATGC	1 cut(s)	709
Sse9I	AATT	2 cut(s)	603, 788
SsiI	CCGC	1 cut(s)	718
SspMI	CTAG	5 cut(s)	227, 246, 414, 450, 857
StyD4I	CCNGG	1 cut(s)	274
TaaI	ACNGT	5 cut(s)	31, 611, 638, 736, 808
TaqI	TCGA	3 cut(s)	127, 418, 793
TaqII	GACCGA	1 cut(s)	73
TasI	AATT	2 cut(s)	603, 788
TatI	WGTACW	1 cut(s)	286
TfiI	GAWTC	1 cut(s)	739
Tru1I	TTAA	4 cut(s)	63, 266, 432, 606
Tru9I	TTAA	4 cut(s)	63, 266, 432, 606
TseI	GCWGC	4 cut(s)	249, 356, 437, 702
TspDTI	ATGAA	4 cut(s)	40, 789, 911, 966
VpaK11BI	GGWCC	1 cut(s)	592
XapI	RAATTY	1 cut(s)	788
XceI	RCATGY	2 cut(s)	488, 709
XmiI	GTMKAC	2 cut(s)	418, 840
XspI	CTAG	5 cut(s)	227, 246, 414, 450, 857
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.