Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010446

Physical Location & Seq

Genomic Coordinates Reverse (-)

31300974 .. 31304621

Gene Structure 3648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG252300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCAGATGAATTTCAGAATACTGGGAACTGGTGGGACTCATCCTCGACCTCAAGAAACAGGTTTGAAGCCGGTGCATCGCCACCATCTTCAGGCCTCAATAGCTTGGGAAGCTTTGGATGGCAACCAGACATGATTGAAATCAAGGCAAGGTCTTCTATGGATTCCGGGTCGGTCTCCGGTACTTCTTCAATGGTCTTCCATGATCCTCAGAAGCTGCAAGGGTCTGATTCTTCCAGTGGAGGCGACCCTAGCTTGCACATGATGGGTTTAGGGCTTAACTCTCAGGCAACAGATTGGAACCAAGCCATATTTCGGGGTGAGAAGGCCGAGACCAGTTTTCGTTCAATATTACAAGACAACATGAACTCCAACGCAAACTTTCAGCAAGAAACACACGATCAGCAACAACTCCAGTGGAGAGACAAGTTGTTTACTGGCAGCTCCGGCGAAATGAGCCGGGGTTTTTCTTTAGACCAAACGCAGTTTAGTCCTCAATATAGCTCCGGCGAAAGCACAGTGACATGTCAAGGCTTGCCCACTAGTTTTCAAATGGATTCAGCAGCTTTATACGGGACCAGTCCAACAACCATATTACAAGGACTGCTGGGATCACCTCATGATCATAATCAGCCACAACCGCCTTCACCCTCTATCATTTTTCCATATCAAGCAAGTTATGGCATTAACTCGACTGAGCTATTGCCTTCTTGGTCTAACAAAGTCCCTCAGTTTCTAAGAACATCACCTCCAAAACACCCTTCTAACAGTCCTCATAGCCATTTGCAATTTTCTAATAACGCTCCCTTTTGGAATGCACCTCACGAGGCAGCCATGAAAGATGTCCGGCCGACCTTTTTCCCGTCATTGCAACCACAATTTCCCACGGCACGGTTCGATGAGAAACCAAAGAATATATCTGAAGTTCATCAGGATTCTGGTGCGGTGGTGAAGAAAAGTGGGAGTGAAGCAGCATCCAAAAGGCCTCGAAATGAAACGTCATCAACTTTGCCAGCTTTTAAGGTGAGGAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCGCCTTTCGGAAAGGTAAGTTTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

367

Amino Acids

40.18

Weight (kDa)

6.36

Isoelectric Point (pI)

62.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010446)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20640 AT3G20640 AT3G20640 AT3G20640
fragaria_vesca	FvH4_3g21440
malus_domestica	MD03G1216400.v1.1 MD11G1230700.v1.1
prunus_persica	Prupe.4G196600_v2.0.a1 Prupe.4G196600_v2.0.a1
pyrus_communis	pycom03g16440 pycom11g20430
rosa_chinensis	RchiOBHm_Chr5g0036871
rosa_laevigata	RLG00000033729
rosa_multiflora	Rmu_sc0000399.1_g000019
rosa_roxburghii	Rroxscaffold_1G00044130
rosa_rugosa	Rorug05G0158100
rosa_samantha	Rh5AG250700 Rh5BG252300 Rh5CG284300 Rh5DG260800
rosa_wichuraiana	Rw5G023060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1069
AciI	CCGC	2 cut(s)	641, 944
AclWI	GGATC	2 cut(s)	200, 619
AcoI	YGGCCR	1 cut(s)	848
AcsI	RAATTY	1 cut(s)	11
AcuI	CTGAAG	2 cut(s)	75, 942
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	4 cut(s)	92, 315, 891, 1069
AflIII	ACRYGT	1 cut(s)	524
AgsI	TTSAA	5 cut(s)	68, 140, 192, 348, 551
AhlI	ACTAGT	1 cut(s)	542
AjuI	GAANNNNNNNTTGG	4 cut(s)	297, 329, 745, 777
AloI	GAACNNNNNNTCC	2 cut(s)	733, 765
Alw26I	GTCTC	3 cut(s)	181, 326, 417
AlwI	GGATC	2 cut(s)	200, 619
AlwNI	CAGNNNCTG	1 cut(s)	217
AoxI	GGCC	4 cut(s)	94, 327, 848, 983
ApeKI	GCWGC	5 cut(s)	217, 441, 563, 830, 971
ApoI	RAATTY	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	576
AsuC2I	CCSGG	2 cut(s)	169, 461
AsuHPI	GGTGA	6 cut(s)	332, 606, 639, 738, 961, 1036
AvaII	GGWCC	1 cut(s)	576
BauI	CACGAG	1 cut(s)	824
BbsI	GAAGAC	2 cut(s)	147, 190
BbvI	GCAGC	5 cut(s)	204, 453, 575, 842, 983
BccI	CCATC	4 cut(s)	94, 114, 259, 1033
BceAI	ACGGC	1 cut(s)	903
BclI	TGATCA	1 cut(s)	622
BcnI	CCSGG	2 cut(s)	169, 461
BcoDI	GTCTC	3 cut(s)	181, 326, 417
BcuI	ACTAGT	1 cut(s)	542
BfaI	CTAG	2 cut(s)	252, 543
BisI	GCNGC	5 cut(s)	218, 442, 564, 831, 972
BlsI	GCNGC	5 cut(s)	219, 443, 565, 832, 973
Bme1390I	CCNGG	2 cut(s)	169, 461
Bme18I	GGWCC	1 cut(s)	576
BmgT120I	GGNCC	1 cut(s)	576
BmiI	GGNNCC	2 cut(s)	302, 577
BmrFI	CCNGG	2 cut(s)	169, 461
BmrI	ACTGGG	1 cut(s)	33
BmsI	GCATC	2 cut(s)	86, 983
BmuI	ACTGGG	1 cut(s)	33
BpiI	GAAGAC	2 cut(s)	147, 190
BpmI	CTGGAG	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	37
BpuMI	CCSGG	2 cut(s)	169, 461
BsaBI	GATNNNNATC	2 cut(s)	140, 627
BsaI	GGTCTC	2 cut(s)	181, 326
BsaJI	CCNNGG	2 cut(s)	460, 885
BsaWI	WCCGGW	1 cut(s)	179
BsaXI	ACNNNNNCTCC	4 cut(s)	353, 383, 733, 763
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 315, 891, 1069
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	7 cut(s)	28, 35, 237, 336, 415, 442, 579
Bse3DI	GCAATG	1 cut(s)	866
Bse8I	GATNNNNATC	2 cut(s)	140, 627
BseDI	CCNNGG	2 cut(s)	460, 885
BseGI	GGATG	3 cut(s)	41, 125, 974
BseJI	GATNNNNATC	2 cut(s)	140, 627
BseLI	CCNNNNNNNGG	4 cut(s)	92, 315, 891, 1069
BseMI	GCAATG	1 cut(s)	866
BseMII	CTCAG	4 cut(s)	224, 299, 687, 743
BseNI	ACTGG	7 cut(s)	28, 35, 237, 336, 415, 442, 579
BseX3I	CGGCCG	1 cut(s)	848
BseXI	GCAGC	5 cut(s)	204, 453, 575, 842, 983
BseYI	CCCAGC	1 cut(s)	607
BsgI	GTGCAG	1 cut(s)	1041
Bsh1285I	CGRYCG	1 cut(s)	851
BshFI	GGCC	4 cut(s)	96, 329, 850, 985
BsiEI	CGRYCG	1 cut(s)	851
BsiSI	CCGG	7 cut(s)	72, 168, 180, 447, 460, 507, 847
BslFI	GGGAC	4 cut(s)	50, 589, 710, 1058
BslI	CCNNNNNNNGG	4 cut(s)	92, 315, 891, 1069
BsmAI	GTCTC	3 cut(s)	181, 326, 417
BsmFI	GGGAC	4 cut(s)	50, 589, 710, 1058
BsmI	GAATGC	1 cut(s)	820
BsnI	GGCC	4 cut(s)	96, 329, 850, 985
Bso31I	GGTCTC	2 cut(s)	181, 326
Bsp143I	GATC	4 cut(s)	205, 400, 611, 622
BspACI	CCGC	2 cut(s)	641, 944
BspANI	GGCC	4 cut(s)	96, 329, 850, 985
BspCNI	CTCAG	4 cut(s)	223, 298, 688, 742
BspHI	TCATGA	1 cut(s)	619
BspLI	GGNNCC	2 cut(s)	302, 577
BspPI	GGATC	2 cut(s)	200, 619
BspTNI	GGTCTC	2 cut(s)	181, 326
BsrDI	GCAATG	1 cut(s)	866
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	7 cut(s)	28, 35, 237, 336, 415, 442, 579
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	2 cut(s)	460, 885
BssMI	GATC	4 cut(s)	205, 400, 611, 622
BssSI	CACGAG	1 cut(s)	824
Bst2BI	CACGAG	1 cut(s)	824
Bst4CI	ACNGT	3 cut(s)	520, 770, 894
BstC8I	GCNNGC	3 cut(s)	257, 536, 1014
BstDEI	CTNAG	6 cut(s)	210, 285, 696, 729, 737, 1101
BstDSI	CCRYGG	1 cut(s)	885
BstF5I	GGATG	3 cut(s)	41, 125, 974
BstKTI	GATC	4 cut(s)	208, 403, 614, 625
BstMAI	GTCTC	3 cut(s)	181, 326, 417
BstMBI	GATC	4 cut(s)	205, 400, 611, 622
BstMCI	CGRYCG	1 cut(s)	851
BstMWI	GCNNNNNNNGC	6 cut(s)	102, 111, 252, 447, 456, 640
BstNSI	RCATGY	1 cut(s)	528
BstSCI	CCNGG	2 cut(s)	167, 459
BstV1I	GCAGC	5 cut(s)	204, 453, 575, 842, 983
BstV2I	GAAGAC	2 cut(s)	147, 190
BstZI	CGGCCG	1 cut(s)	848
BsuRI	GGCC	4 cut(s)	96, 329, 850, 985
BtgI	CCRYGG	1 cut(s)	885
BtgZI	GCGATG	1 cut(s)	63
BtsCI	GGATG	3 cut(s)	41, 125, 974
BtsI	GCAGTG	1 cut(s)	1053
BtsIMutI	CAGTG	4 cut(s)	244, 422, 525, 1053
Cac8I	GCNNGC	3 cut(s)	257, 536, 1014
CaiI	CAGNNNCTG	1 cut(s)	217
CciI	TCATGA	1 cut(s)	619
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	576
Csp6I	GTAC	1 cut(s)	183
CspCI	CAANNNNNGTGG	2 cut(s)	398, 433
CviAII	CATG	7 cut(s)	133, 203, 262, 364, 525, 620, 835
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	6 cut(s)	210, 285, 696, 729, 737, 1101
DpnI	GATC	4 cut(s)	207, 402, 613, 624
DpnII	GATC	4 cut(s)	205, 400, 611, 622
EaeI	YGGCCR	1 cut(s)	848
EagI	CGGCCG	1 cut(s)	848
EclXI	CGGCCG	1 cut(s)	848
Eco147I	AGGCCT	2 cut(s)	96, 985
Eco31I	GGTCTC	2 cut(s)	181, 326
Eco47I	GGWCC	1 cut(s)	576
Eco52I	CGGCCG	1 cut(s)	848
Eco57I	CTGAAG	2 cut(s)	75, 942
FaeI	CATG	7 cut(s)	136, 206, 265, 367, 528, 623, 838
FalI	AAGNNNNNCTT	1 cut(s)	1084
FaqI	GGGAC	4 cut(s)	50, 589, 710, 1058
FatI	CATG	7 cut(s)	132, 202, 261, 363, 524, 619, 834
FbaI	TGATCA	1 cut(s)	622
Fnu4HI	GCNGC	5 cut(s)	218, 442, 564, 831, 972
FokI	GGATG	3 cut(s)	28, 132, 961
Fsp4HI	GCNGC	5 cut(s)	218, 442, 564, 831, 972
FspBI	CTAG	2 cut(s)	252, 543
GluI	GCNGC	5 cut(s)	218, 442, 564, 831, 972
GsaI	CCCAGC	1 cut(s)	611
GsuI	CTGGAG	1 cut(s)	398
HaeIII	GGCC	4 cut(s)	96, 329, 850, 985
HapII	CCGG	7 cut(s)	72, 168, 180, 447, 460, 507, 847
Hin1II	CATG	7 cut(s)	136, 206, 265, 367, 528, 623, 838
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	6 cut(s)	38, 164, 230, 557, 935, 1050
HpaII	CCGG	7 cut(s)	72, 168, 180, 447, 460, 507, 847
HphI	GGTGA	6 cut(s)	332, 606, 639, 738, 961, 1036
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	5 cut(s)	18, 213, 229, 922, 1085
Hpy188III	TCNNGA	4 cut(s)	54, 620, 824, 932
Hpy8I	GTNNAC	1 cut(s)	435
HpyAV	CCTTC	4 cut(s)	319, 654, 717, 771
HpyCH4III	ACNGT	3 cut(s)	520, 770, 894
HpyCH4IV	ACGT	1 cut(s)	998
HpyCH4V	TGCA	7 cut(s)	77, 220, 259, 787, 818, 871, 1058
HpyF10VI	GCNNNNNNNGC	6 cut(s)	102, 111, 252, 447, 456, 640
HpyF3I	CTNAG	6 cut(s)	210, 285, 696, 729, 737, 1101
HpySE526I	ACGT	1 cut(s)	998
Hsp92II	CATG	7 cut(s)	136, 206, 265, 367, 528, 623, 838
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	4 cut(s)	205, 400, 611, 622
LmnI	GCTCC	3 cut(s)	449, 509, 808
Lsp1109I	GCAGC	5 cut(s)	204, 453, 575, 842, 983
LweI	GCATC	2 cut(s)	86, 983
MaeI	CTAG	2 cut(s)	252, 543
MaeII	ACGT	1 cut(s)	998
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	4 cut(s)	207, 402, 613, 624
MboI	GATC	4 cut(s)	205, 400, 611, 622
MboII	GAAGA	7 cut(s)	81, 147, 180, 190, 225, 964, 1048
MfeI	CAATTG	1 cut(s)	1067
MluCI	AATT	4 cut(s)	11, 788, 878, 1067
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	3 cut(s)	396, 608, 1087
MseI	TTAA	3 cut(s)	279, 687, 1020
MspI	CCGG	7 cut(s)	72, 168, 180, 447, 460, 507, 847
MspR9I	CCNGG	2 cut(s)	169, 461
MunI	CAATTG	1 cut(s)	1067
Mva1269I	GAATGC	1 cut(s)	820
MwoI	GCNNNNNNNGC	6 cut(s)	102, 111, 252, 447, 456, 640
NciI	CCSGG	2 cut(s)	169, 461
NdeII	GATC	4 cut(s)	205, 400, 611, 622
NlaIII	CATG	7 cut(s)	136, 206, 265, 367, 528, 623, 838
NlaIV	GGNNCC	2 cut(s)	302, 577
NmeAIII	GCCGAG	1 cut(s)	355
NmuCI	GTSAC	1 cut(s)	520
NspI	RCATGY	1 cut(s)	528
PagI	TCATGA	1 cut(s)	619
PceI	AGGCCT	2 cut(s)	96, 985
PciI	ACATGT	1 cut(s)	524
PctI	GAATGC	1 cut(s)	820
PfeI	GAWTC	5 cut(s)	164, 230, 557, 935, 1050
PflMI	CCANNNNNTGG	1 cut(s)	1069
PkrI	GCNGC	5 cut(s)	219, 443, 565, 832, 973
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PscI	ACATGT	1 cut(s)	524
PspFI	CCCAGC	1 cut(s)	607
PspN4I	GGNNCC	2 cut(s)	302, 577
PspPI	GGNCC	1 cut(s)	576
PstNI	CAGNNNCTG	1 cut(s)	217
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
SaqAI	TTAA	3 cut(s)	279, 687, 1020
SatI	GCNGC	5 cut(s)	218, 442, 564, 831, 972
Sau3AI	GATC	4 cut(s)	205, 400, 611, 622
Sau96I	GGNCC	1 cut(s)	576
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	2 cut(s)	169, 461
SfaNI	GCATC	2 cut(s)	86, 983
SinI	GGWCC	1 cut(s)	576
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
SpeI	ACTAGT	1 cut(s)	542
Sse9I	AATT	4 cut(s)	11, 788, 878, 1067
SseBI	AGGCCT	2 cut(s)	96, 985
SsiI	CCGC	2 cut(s)	641, 944
SspI	AATATT	1 cut(s)	351
SspMI	CTAG	2 cut(s)	252, 543
StuI	AGGCCT	2 cut(s)	96, 985
StyD4I	CCNGG	2 cut(s)	167, 459
TaaI	ACNGT	3 cut(s)	520, 770, 894
TaiI	ACGT	1 cut(s)	1001
TaqI	TCGA	4 cut(s)	47, 692, 897, 988
TaqII	GACCGA	1 cut(s)	163
TasI	AATT	4 cut(s)	11, 788, 878, 1067
TfiI	GAWTC	5 cut(s)	164, 230, 557, 935, 1050
Tru1I	TTAA	3 cut(s)	279, 687, 1020
Tru9I	TTAA	3 cut(s)	279, 687, 1020
TscAI	CASTG	4 cut(s)	244, 422, 525, 1060
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	5 cut(s)	217, 441, 563, 830, 971
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	5 cut(s)	24, 380, 851, 917, 1008
TspRI	CASTG	4 cut(s)	244, 422, 525, 1060
Van91I	CCANNNNNTGG	1 cut(s)	1069
VpaK11BI	GGWCC	1 cut(s)	576
XapI	RAATTY	1 cut(s)	11
XceI	RCATGY	1 cut(s)	528
XspI	CTAG	2 cut(s)	252, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.