AT3G20680

Domain of unknown function (DUF1995)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015382
Physical Location & Seq
Reverse (-)
7230068 .. 7231194
1127 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G20680.1

Sequence Viewer

Length: 1017 bp
ATGGCTTCTTCGACTCTCTTCAAACTCAATTCACAGACATTCAAAGCTCTAAACCCATCTCCTCCTTCGTTATCTCCTCCCAATTCCAGAATTTTCCATCTTCATTTCTCCAAATCACTCTCACAACAGCATTCAAAGCTCAACCACAAATCAACCACTACTCGTTTATTCGCTCCTCTCTGTTCCTCTCTTCCTTCACCTTCTTCTTCTTCTCCTCCCCTTTCCAAAGAAGAAGCCATTAATCAAGCCAAAACTTGTCTCCTTTCATGTCTCATCAAACCCTTAAACAACCCAAAACTCGCTTCCCCAAAACTCAGGAAGCTCAAACAACCAAGATTCCGTCTTGAAATCCCAATCCTTGACGATGATTCTCCTTCGTCACTCTCTCAGCTCGCTTTCTCGATCTTTCATGACTTACCCATCTCGAGAAGAGGCTCTAATGTCAAGCTTCTCTTCCTCTGGCCTAACCCTTCATTCATCGATCCCGCCGTTAAAGCTTTCCGGTCAGACTCTATCCACCACATTGCCATGTCTCCGGTCTCAGACTCTCTTAAAACAGCTCTGAGATCTGCTGACGTGGCGATCTTCATGGCTCCGGAGAAATCGCAGCTGGAGGATGTTAAGACCGCGAGTGAAGCTTTTTCTACAAAACCTGTAGTAATGATCAATCCGAGATGGTTGTTTGAAGAAGAGAAAAGCTTTGGAGATGGCTTTATTGGTTCCTTTGAAGTGATTTATGCGTTCACTGGCTTAGAAGTGAGAGGAGTGTTTAGTAAGAGAAAAGGAGTGATCTTTAAGTGTGTAAGAGACGGTGTTGTGAGTGGAGAAAGATGGAATGTTCTCGTTGAAGAAGAAGAAGGTAATGGTACTTTGAAAGTTGTTTCACAATTCAATTCTCGACCATCAATCGAAGAAGTTGAGCTTGTTCTGTATAACTTGATGGCTATGAATTCTCCTATTACCAAATCAGCTAAGTTTCTTAGTGATTTGGTTTCAAATATCACTGGGAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1995

Protein Analysis

338

Amino Acids

37.44

Weight (kDa)

9.5

Isoelectric Point (pI)

63.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1995 PF09353 73 - 307 7.7e-35 Domain of unknown function (DUF1995)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20680
fragaria_vesca FvH4_3g21740
malus_domestica MD03G1212500.v1.1 MD11G1227700.v1.1
prunus_persica Prupe.4G201600_v2.0.a1
pyrus_communis pycom03g16120
rosa_chinensis RchiOBHm_Chr5g0037211
rosa_laevigata RLG00000033765
rosa_multiflora Rmu_co8240257.1_g000001 Rmu_sc0006633.1_g000004
rosa_roxburghii Rroxscaffold_1G00043760
rosa_rugosa Rorug05G0163800
rosa_samantha Rh5BG255400 Rh5CG288100 Rh5DG263700
rosa_wichuraiana Rw5G023400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 629
AccIII TCCGGA 1 cut(s) 595
AciI CCGC 2 cut(s) 486, 627
AclWI GGATC 1 cut(s) 476
AcsI RAATTY 2 cut(s) 90, 949
AfaI GTAC 1 cut(s) 868
AjiI CACGTC 1 cut(s) 577
AjuI GAANNNNNNNTTGG 2 cut(s) 286, 318
Alw26I GTCTC 5 cut(s) 263, 275, 537, 544, 801
AlwI GGATC 1 cut(s) 476
Ama87I CYCGRG 1 cut(s) 424
Aor13HI TCCGGA 1 cut(s) 595
AoxI GGCC 1 cut(s) 461
ApeKI GCWGC 1 cut(s) 607
ApoI RAATTY 2 cut(s) 90, 949
AseI ATTAAT 1 cut(s) 240
AsuHPI GGTGA 1 cut(s) 189
AvaI CYCGRG 1 cut(s) 424
BbvI GCAGC 1 cut(s) 619
BccI CCATC 8 cut(s) 64, 105, 428, 669, 701, 825, 910, 934
BceAI ACGGC 1 cut(s) 473
BclI TGATCA 1 cut(s) 663
BcoDI GTCTC 5 cut(s) 263, 275, 537, 544, 801
BfmI CTRYAG 1 cut(s) 654
BglII AGATCT 1 cut(s) 566
BisI GCNGC 1 cut(s) 608
BlsI GCNGC 1 cut(s) 609
BmeT110I CYCGRG 1 cut(s) 424
BmgBI CACGTC 1 cut(s) 577
BmiI GGNNCC 2 cut(s) 594, 721
BmrI ACTGGG 1 cut(s) 1014
BmuI ACTGGG 1 cut(s) 1014
BpmI CTGGAG 1 cut(s) 632
Bsa29I ATCGAT 1 cut(s) 480
BsaI GGTCTC 1 cut(s) 544
BsaWI WCCGGW 3 cut(s) 501, 535, 595
Bse1I ACTGG 2 cut(s) 751, 1009
Bse3DI GCAATG 1 cut(s) 522
BseAI TCCGGA 1 cut(s) 595
BseCI ATCGAT 1 cut(s) 480
BseGI GGATG 1 cut(s) 622
BseMI GCAATG 1 cut(s) 522
BseMII CTCAG 4 cut(s) 328, 401, 554, 555
BseNI ACTGG 2 cut(s) 751, 1009
BseRI GAGGAG 5 cut(s) 51, 66, 165, 204, 777
BseXI GCAGC 1 cut(s) 619
Bsh1236I CGCG 1 cut(s) 629
BshFI GGCC 1 cut(s) 463
BshVI ATCGAT 1 cut(s) 480
BsiHKCI CYCGRG 1 cut(s) 424
BsiSI CCGG 3 cut(s) 502, 536, 596
BsmAI GTCTC 5 cut(s) 263, 275, 537, 544, 801
BsmBI CGTCTC 1 cut(s) 801
BsmI GAATGC 1 cut(s) 130
BsnI GGCC 1 cut(s) 463
Bso31I GGTCTC 1 cut(s) 544
BsoBI CYCGRG 1 cut(s) 424
Bsp13I TCCGGA 1 cut(s) 595
Bsp143I GATC 6 cut(s) 402, 481, 566, 582, 663, 789
BspACI CCGC 2 cut(s) 486, 627
BspANI GGCC 1 cut(s) 463
BspCNI CTCAG 4 cut(s) 327, 400, 554, 555
BspDI ATCGAT 1 cut(s) 480
BspEI TCCGGA 1 cut(s) 595
BspFNI CGCG 1 cut(s) 629
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 2 cut(s) 594, 721
BspPI GGATC 1 cut(s) 476
BspTNI GGTCTC 1 cut(s) 544
BsrDI GCAATG 1 cut(s) 522
BsrI ACTGG 2 cut(s) 751, 1009
BssMI GATC 6 cut(s) 402, 481, 566, 582, 663, 789
Bst4CI ACNGT 1 cut(s) 812
Bst6I CTCTTC 5 cut(s) 23, 195, 424, 458, 684
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 7 cut(s) 314, 387, 541, 563, 751, 972, 980
BstF5I GGATG 1 cut(s) 622
BstFNI CGCG 1 cut(s) 629
BstKTI GATC 6 cut(s) 405, 484, 569, 585, 666, 792
BstMAI GTCTC 5 cut(s) 263, 275, 537, 544, 801
BstMBI GATC 6 cut(s) 402, 481, 566, 582, 663, 789
BstMWI GCNNNNNNNGC 4 cut(s) 136, 494, 578, 635
BstSFI CTRYAG 1 cut(s) 654
BstUI CGCG 1 cut(s) 629
BstV1I GCAGC 1 cut(s) 619
BstX2I RGATCY 1 cut(s) 566
BstYI RGATCY 1 cut(s) 566
Bsu15I ATCGAT 1 cut(s) 480
BsuRI GGCC 1 cut(s) 463
BsuTUI ATCGAT 1 cut(s) 480
BtrI CACGTC 1 cut(s) 577
BtsCI GGATG 1 cut(s) 622
BtsIMutI CAGTG 2 cut(s) 744, 1002
Cac8I GCNNGC 1 cut(s) 393
CciI TCATGA 1 cut(s) 409
ClaI ATCGAT 1 cut(s) 480
Csp6I GTAC 1 cut(s) 867
CviAII CATG 4 cut(s) 267, 410, 529, 589
CviQI GTAC 1 cut(s) 867
DdeI CTNAG 7 cut(s) 314, 387, 541, 563, 751, 972, 980
DpnI GATC 6 cut(s) 404, 483, 568, 584, 665, 791
DpnII GATC 6 cut(s) 402, 481, 566, 582, 663, 789
Eam1104I CTCTTC 5 cut(s) 23, 195, 424, 458, 684
EarI CTCTTC 5 cut(s) 23, 195, 424, 458, 684
Eco31I GGTCTC 1 cut(s) 544
Eco88I CYCGRG 1 cut(s) 424
EcoRI GAATTC 1 cut(s) 949
Esp3I CGTCTC 1 cut(s) 801
FaeI CATG 4 cut(s) 270, 413, 532, 592
FaiI YATR 7 cut(s) 268, 411, 530, 590, 738, 933, 947
FalI AAGNNNNNCTT 4 cut(s) 437, 469, 906, 938
FatI CATG 4 cut(s) 266, 409, 528, 588
FauI CCCGC 1 cut(s) 493
FbaI TGATCA 1 cut(s) 663
Fnu4HI GCNGC 1 cut(s) 608
FokI GGATG 1 cut(s) 629
Fsp4HI GCNGC 1 cut(s) 608
GluI GCNGC 1 cut(s) 608
GsuI CTGGAG 1 cut(s) 632
HaeIII GGCC 1 cut(s) 463
HapII CCGG 3 cut(s) 502, 536, 596
Hin1II CATG 4 cut(s) 270, 413, 532, 592
HindIII AAGCTT 4 cut(s) 446, 495, 636, 697
HinfI GANTC 5 cut(s) 13, 336, 368, 509, 545
HpaII CCGG 3 cut(s) 502, 536, 596
HphI GGTGA 1 cut(s) 189
Hpy166II GTNNAC 1 cut(s) 744
Hpy188I TCNGA 4 cut(s) 508, 544, 564, 672
Hpy188III TCNNGA 9 cut(s) 87, 316, 344, 400, 410, 424, 426, 596, 897
Hpy8I GTNNAC 1 cut(s) 744
HpyAV CCTTC 6 cut(s) 75, 204, 210, 384, 480, 851
HpyCH4III ACNGT 1 cut(s) 812
HpyCH4IV ACGT 1 cut(s) 576
HpyF10VI GCNNNNNNNGC 4 cut(s) 136, 494, 578, 635
HpyF3I CTNAG 7 cut(s) 314, 387, 541, 563, 751, 972, 980
HpySE526I ACGT 1 cut(s) 576
Hsp92II CATG 4 cut(s) 270, 413, 532, 592
Kpn2I TCCGGA 1 cut(s) 595
Ksp22I TGATCA 1 cut(s) 663
Kzo9I GATC 6 cut(s) 402, 481, 566, 582, 663, 789
LmnI GCTCC 2 cut(s) 178, 598
Lsp1109I GCAGC 1 cut(s) 619
MaeII ACGT 1 cut(s) 576
MaeIII GTNAC 1 cut(s) 378
MalI GATC 6 cut(s) 404, 483, 568, 584, 665, 791
MboI GATC 6 cut(s) 402, 481, 566, 582, 663, 789
MflI RGATCY 1 cut(s) 566
MluCI AATT 6 cut(s) 28, 82, 90, 887, 892, 949
MlyI GAGTC 3 cut(s) 7, 503, 539
MnlI CCTC 9 cut(s) 72, 87, 186, 196, 225, 425, 467, 607, 755
MroI TCCGGA 1 cut(s) 595
MseI TTAA 6 cut(s) 240, 284, 492, 552, 621, 795
MslI CAYNNNNRTG 1 cut(s) 527
MspA1I CMGCKG 1 cut(s) 610
MspI CCGG 3 cut(s) 502, 536, 596
Mva1269I GAATGC 1 cut(s) 130
MvnI CGCG 1 cut(s) 629
MwoI GCNNNNNNNGC 4 cut(s) 136, 494, 578, 635
NdeII GATC 6 cut(s) 402, 481, 566, 582, 663, 789
NlaIII CATG 4 cut(s) 270, 413, 532, 592
NlaIV GGNNCC 2 cut(s) 594, 721
NmuCI GTSAC 1 cut(s) 378
PaeR7I CTCGAG 1 cut(s) 424
PagI TCATGA 1 cut(s) 409
PcsI WCGNNNNNNNCGW 1 cut(s) 486
PctI GAATGC 1 cut(s) 130
PfeI GAWTC 2 cut(s) 336, 368
PkrI GCNGC 1 cut(s) 609
PleI GAGTC 3 cut(s) 7, 503, 539
PpsI GAGTC 3 cut(s) 7, 503, 539
PshBI ATTAAT 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 594, 721
PsuI RGATCY 1 cut(s) 566
PvuII CAGCTG 1 cut(s) 610
RsaI GTAC 1 cut(s) 868
RsaNI GTAC 1 cut(s) 867
RseI CAYNNNNRTG 1 cut(s) 527
SaqAI TTAA 6 cut(s) 240, 284, 492, 552, 621, 795
SatI GCNGC 1 cut(s) 608
Sau3AI GATC 6 cut(s) 402, 481, 566, 582, 663, 789
SchI GAGTC 3 cut(s) 7, 503, 539
SfcI CTRYAG 1 cut(s) 654
Sfr274I CTCGAG 1 cut(s) 424
SlaI CTCGAG 1 cut(s) 424
SmiMI CAYNNNNRTG 1 cut(s) 527
SmlI CTYRAG 1 cut(s) 424
SmoI CTYRAG 1 cut(s) 424
Sse9I AATT 6 cut(s) 28, 82, 90, 887, 892, 949
SsiI CCGC 2 cut(s) 486, 627
TaaI ACNGT 1 cut(s) 812
TaiI ACGT 1 cut(s) 579
TaqI TCGA 6 cut(s) 11, 401, 425, 480, 898, 909
TasI AATT 6 cut(s) 28, 82, 90, 887, 892, 949
TfiI GAWTC 2 cut(s) 336, 368
Tru1I TTAA 6 cut(s) 240, 284, 492, 552, 621, 795
Tru9I TTAA 6 cut(s) 240, 284, 492, 552, 621, 795
TscAI CASTG 2 cut(s) 751, 1009
TseFI GTSAC 1 cut(s) 378
TseI GCWGC 1 cut(s) 607
Tsp45I GTSAC 1 cut(s) 378
TspDTI ATGAA 7 cut(s) 92, 255, 398, 462, 466, 577, 962
TspGWI ACGGA 1 cut(s) 329
TspRI CASTG 2 cut(s) 751, 1009
VspI ATTAAT 1 cut(s) 240
XapI RAATTY 2 cut(s) 90, 949
XhoI CTCGAG 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.