Rmu_co8240257.1_g000001

Domain of unknown function (DUF1995)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8240257.1
OG0015382
Physical Location & Seq
Forward (+)
1 .. 729
729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8240257.1_g000001.1.cds

Sequence Viewer

Length: 729 bp
ctcagactcaccagcaagctcaagaagctcaaacagccccgattccgtatcgaaatcccggtcgccgacgactcccccgagtccctatcccaactcgccctccaattcttccgagacctccccatcaaaagaaaaggctccccagtcaacaccgtaatcctatggcccgatatcacctccacagaatcggcacttaaggccttcaagtcctccccctcaagcgcagtagagcatttagacattcccgcagtcgccaacggtaataccagaatttcaaacaacgctgacgtggcggtgtttttggcgccagaaccatcccaagtggcggttatgaaaaccgttgtggatttgttgtacccgaggccggtggttattttcaaccccaagtgggggtttgaggaagaggccgagtttggtgagctgagtggatttgtgggttcgtttgaggtcattttttcgtttatgggtttggaggtgaaagggcttttgagtaaaagaaatggggtggttttcaagtgtgtgagaaatggggttgtgagcggtgagaagtgggcggttcttgttgcagaagaacaaggggaattgaaggtggtttcgacgtttaagtcgaggccttcgattgctgaagttgagtatgtgttgtataatttgatggccatgaattcgcctgtaacgaaatccgtgaagttctttaaggatttggtgtcaaatgtaaccggaaagaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1995

Protein Analysis

242

Amino Acids

26.72

Weight (kDa)

9.21

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20680
fragaria_vesca FvH4_3g21740
malus_domestica MD03G1212500.v1.1 MD11G1227700.v1.1
prunus_persica Prupe.4G201600_v2.0.a1
pyrus_communis pycom03g16120
rosa_chinensis RchiOBHm_Chr5g0037211
rosa_laevigata RLG00000033765
rosa_multiflora Rmu_co8240257.1_g000001 Rmu_sc0006633.1_g000004
rosa_roxburghii Rroxscaffold_1G00043760
rosa_rugosa Rorug05G0163800
rosa_samantha Rh5BG255400 Rh5CG288100 Rh5DG263700
rosa_wichuraiana Rw5G023400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 604
AccB1I GGYRCC 1 cut(s) 304
AccBSI CCGCTC 1 cut(s) 540
AciI CCGC 5 cut(s) 246, 293, 326, 540, 554
AcoI YGGCCR 1 cut(s) 654
AcsI RAATTY 2 cut(s) 270, 661
AcuI CTGAAG 1 cut(s) 645
AcyI GRCGYC 1 cut(s) 305
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 5 cut(s) 325, 364, 388, 389, 390
AflII CTTAAG 1 cut(s) 194
AgsI TTSAA 5 cut(s) 205, 276, 379, 514, 586
AjiI CACGTC 1 cut(s) 289
AluBI AGCT 3 cut(s) 19, 28, 421
AluI AGCT 3 cut(s) 19, 28, 421
Alw26I GTCTC 1 cut(s) 108
Ama87I CYCGRG 2 cut(s) 77, 358
AoxI GGCC 6 cut(s) 164, 198, 362, 405, 611, 654
ApoI RAATTY 2 cut(s) 270, 661
ArsI GACNNNNNNTTYG 2 cut(s) 45, 77
AspLEI GCGC 2 cut(s) 224, 307
AspS9I GGNCC 1 cut(s) 165
AsuC2I CCSGG 1 cut(s) 59
AsuHPI GGTGA 4 cut(s) 166, 428, 487, 554
AvaI CYCGRG 2 cut(s) 77, 358
BalI TGGCCA 1 cut(s) 656
BanI GGYRCC 1 cut(s) 304
BccI CCATC 3 cut(s) 131, 322, 646
BcnI CCSGG 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 108
BfoI RGCGCY 1 cut(s) 308
BfrI CTTAAG 1 cut(s) 194
Bme1390I CCNGG 1 cut(s) 59
BmeT110I CYCGRG 2 cut(s) 77, 358
BmgBI CACGTC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 165
BmiI GGNNCC 2 cut(s) 139, 306
BmrFI CCNGG 1 cut(s) 59
BmrI ACTGGG 1 cut(s) 137
BmuI ACTGGG 1 cut(s) 137
BpuEI CTTGAG 2 cut(s) 5, 202
BpuMI CCSGG 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 305
BsaI GGTCTC 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 359
BsaWI WCCGGW 1 cut(s) 716
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 5 cut(s) 325, 364, 388, 389, 390
Bse118I RCCGGY 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 359
BseGI GGATG 1 cut(s) 314
BseLI CCNNNNNNNGG 5 cut(s) 325, 364, 388, 389, 390
BseMII CTCAG 2 cut(s) 16, 413
BseNI ACTGG 1 cut(s) 143
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 6 cut(s) 166, 200, 364, 407, 613, 656
BshNI GGYRCC 1 cut(s) 304
BsiEI CGRYCG 1 cut(s) 63
BsiHKCI CYCGRG 2 cut(s) 77, 358
BsiSI CCGG 3 cut(s) 59, 365, 717
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 5 cut(s) 325, 364, 388, 389, 390
BsmAI GTCTC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 6 cut(s) 166, 200, 364, 407, 613, 656
Bso31I GGTCTC 1 cut(s) 108
BsoBI CYCGRG 2 cut(s) 77, 358
BspACI CCGC 5 cut(s) 246, 293, 326, 540, 554
BspANI GGCC 6 cut(s) 166, 200, 364, 407, 613, 656
BspCNI CTCAG 2 cut(s) 15, 414
BspLI GGNNCC 2 cut(s) 139, 306
BspT107I GGYRCC 1 cut(s) 304
BspTI CTTAAG 1 cut(s) 194
BspTNI GGTCTC 1 cut(s) 108
BsrBI CCGCTC 1 cut(s) 540
BsrFI RCCGGY 1 cut(s) 364
BsrI ACTGG 1 cut(s) 143
BssAI RCCGGY 1 cut(s) 364
BssECI CCNNGG 1 cut(s) 359
BssNI GRCGYC 1 cut(s) 305
Bst4CI ACNGT 3 cut(s) 154, 260, 340
Bst6I CTCTTC 1 cut(s) 396
BstACI GRCGYC 1 cut(s) 305
BstAFI CTTAAG 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 17
BstDEI CTNAG 2 cut(s) 2, 422
BstF5I GGATG 1 cut(s) 314
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 2 cut(s) 224, 307
BstMAI GTCTC 1 cut(s) 108
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 4 cut(s) 25, 34, 197, 290
BstSCI CCNGG 1 cut(s) 57
BsuRI GGCC 6 cut(s) 166, 200, 364, 407, 613, 656
BtrI CACGTC 1 cut(s) 289
BtsCI GGATG 1 cut(s) 314
Cac8I GCNNGC 1 cut(s) 17
CfoI GCGC 2 cut(s) 224, 307
Cfr10I RCCGGY 1 cut(s) 364
Cfr13I GGNCC 1 cut(s) 165
Csp6I GTAC 1 cut(s) 355
CviAII CATG 1 cut(s) 658
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 2 cut(s) 2, 422
DinI GGCGCC 1 cut(s) 306
DrdI GACNNNNNNGTC 1 cut(s) 604
DseDI GACNNNNNNGTC 1 cut(s) 604
EaeI YGGCCR 1 cut(s) 654
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Eco147I AGGCCT 2 cut(s) 200, 613
Eco31I GGTCTC 1 cut(s) 108
Eco32I GATATC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 645
Eco88I CYCGRG 2 cut(s) 77, 358
EcoRI GAATTC 1 cut(s) 661
EcoRV GATATC 1 cut(s) 172
EgeI GGCGCC 1 cut(s) 306
EheI GGCGCC 1 cut(s) 306
FaeI CATG 1 cut(s) 661
FaiI YATR 6 cut(s) 163, 332, 464, 636, 645, 659
FaqI GGGAC 1 cut(s) 67
FatI CATG 1 cut(s) 657
FauI CCCGC 1 cut(s) 253
FokI GGATG 1 cut(s) 301
GlaI GCGC 2 cut(s) 223, 306
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 6 cut(s) 166, 200, 364, 407, 613, 656
HapII CCGG 3 cut(s) 59, 365, 717
HhaI GCGC 2 cut(s) 224, 307
Hin1I GRCGYC 1 cut(s) 305
Hin1II CATG 1 cut(s) 661
Hin6I GCGC 2 cut(s) 222, 305
HinP1I GCGC 2 cut(s) 222, 305
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 5 cut(s) 6, 42, 71, 80, 185
HpaII CCGG 3 cut(s) 59, 365, 717
HphI GGTGA 4 cut(s) 166, 428, 487, 554
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 2 cut(s) 5, 113
Hpy188III TCNNGA 1 cut(s) 22
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 2 cut(s) 71, 601
HpyAV CCTTC 3 cut(s) 211, 580, 624
HpyCH4III ACNGT 3 cut(s) 154, 260, 340
HpyCH4IV ACGT 2 cut(s) 288, 599
HpyCH4V TGCA 1 cut(s) 566
HpyF10VI GCNNNNNNNGC 4 cut(s) 25, 34, 197, 290
HpyF3I CTNAG 2 cut(s) 2, 422
HpySE526I ACGT 2 cut(s) 288, 599
Hsp92I GRCGYC 1 cut(s) 305
Hsp92II CATG 1 cut(s) 661
HspAI GCGC 2 cut(s) 222, 305
KasI GGCGCC 1 cut(s) 304
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 7 cut(s) 25, 72, 156, 280, 321, 378, 681
MaeII ACGT 2 cut(s) 288, 599
MaeIII GTNAC 2 cut(s) 670, 712
MbiI CCGCTC 1 cut(s) 540
MboII GAAGA 3 cut(s) 100, 413, 581
MlsI TGGCCA 1 cut(s) 656
MluCI AATT 5 cut(s) 104, 270, 581, 646, 661
MluNI TGGCCA 1 cut(s) 656
Mly113I GGCGCC 1 cut(s) 305
MlyI GAGTC 2 cut(s) 65, 89
Mox20I TGGCCA 1 cut(s) 656
MscI TGGCCA 1 cut(s) 656
MseI TTAA 3 cut(s) 195, 603, 693
Msp20I TGGCCA 1 cut(s) 656
MspCI CTTAAG 1 cut(s) 194
MspI CCGG 3 cut(s) 59, 365, 717
MspR9I CCNGG 1 cut(s) 59
MwoI GCNNNNNNNGC 4 cut(s) 25, 34, 197, 290
NarI GGCGCC 1 cut(s) 305
NciI CCSGG 1 cut(s) 59
NlaIII CATG 1 cut(s) 661
NlaIV GGNNCC 2 cut(s) 139, 306
NmeAIII GCCGAG 1 cut(s) 433
PceI AGGCCT 2 cut(s) 200, 613
PcsI WCGNNNNNNNCGW 4 cut(s) 75, 605, 614, 671
PfeI GAWTC 2 cut(s) 42, 185
PleI GAGTC 2 cut(s) 65, 88
PluTI GGCGCC 1 cut(s) 308
PpsI GAGTC 2 cut(s) 65, 88
PspN4I GGNNCC 2 cut(s) 139, 306
PspPI GGNCC 1 cut(s) 165
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
SaqAI TTAA 3 cut(s) 195, 603, 693
Sau96I GGNCC 1 cut(s) 165
SchI GAGTC 2 cut(s) 65, 89
ScrFI CCNGG 1 cut(s) 59
SfoI GGCGCC 1 cut(s) 306
SmlI CTYRAG 3 cut(s) 20, 194, 217
SmoI CTYRAG 3 cut(s) 20, 194, 217
Sse9I AATT 5 cut(s) 104, 270, 581, 646, 661
SseBI AGGCCT 2 cut(s) 200, 613
SsiI CCGC 5 cut(s) 246, 293, 326, 540, 554
SspDI GGCGCC 1 cut(s) 304
StuI AGGCCT 2 cut(s) 200, 613
StyD4I CCNGG 1 cut(s) 57
TaaI ACNGT 3 cut(s) 154, 260, 340
TaiI ACGT 2 cut(s) 291, 602
TaqI TCGA 4 cut(s) 51, 596, 608, 617
TasI AATT 5 cut(s) 104, 270, 581, 646, 661
TfiI GAWTC 2 cut(s) 42, 185
Tru1I TTAA 3 cut(s) 195, 603, 693
Tru9I TTAA 3 cut(s) 195, 603, 693
TspDTI ATGAA 2 cut(s) 347, 674
TspGWI ACGGA 2 cut(s) 35, 670
Vha464I CTTAAG 1 cut(s) 194
XapI RAATTY 2 cut(s) 270, 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.