FvH4_3g21740

Domain of unknown function (DUF1995)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015382
Physical Location & Seq
Forward (+)
14782768 .. 14783739
972 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g21740.t1

Sequence Viewer

Length: 972 bp
ATGGCTTCCAATCTTCTCAGACTTCATACAAAAACCATCACAACACCAAACCCAGCATCCCCATTTTCACACACCAAAACCCTTTCCTCCTCTTCTCTTCCATTTCCCTCAACTTTCCTCAACAAAACCAAAACCCTCTCTCTATCCCCACTCTGCTCCCTCACCCCACCAAACTCAAAAGAAGCAGCCATCCAGCAAGCCAAGACATGTCTCACAACCACCTTAGAGAAGCCCCTCAACAACCTCAGACTCACCAGCAAGCTCAAGAAGCTCAAACAACCCCGGTTTCGTATCGAAATCCCGGTCGCTGACGACTCCCCGGAGTCCCTATCCCAGCTCGCCCTCCACTTCTTCAAAGACCTCCCCATCAAAAGAAAAGGCTCCCCAGTCAACATCCTAGTTCTATGGCCCGACATTACCTCCGCAGAATCCGCAGTCAAAGCCTTCATGTCCTCCCCGGCAAGCCCAGTTGAGCATTTGGACATTCCCTCAGTCGCCAACGGTAATACCAGAATTTCAAACACAGCTGACGTGGCAGTGTTTTTAGCGCCAGAACCGTCCCAAGTGGCGGTTATGAAAACCGTTGCGGAGTTGCTGTACCCGAGGCCGGTGGTTATGTTCAACCCAAAGTGGGGGTTTGAGGAAGAAGCAGAGTTTGGTGAGCTGAGTGGGTTTGTGGGTTCGTTTGAGGTGATCTTTTCGTTTATGGGTTTGGAAGTGAAGGGGCTTTTGAGTAAGAGAAATGGTGTGGTTTTCAAGTGTGTGAGAAATGGAGTTGTGAGTGGTGAGAAGTGGGCTGTTCTTGTTGAGGAAGAGCAAGGGGAGTTGAAGCTGGTTTCGGCGTTTAAGACTAGGCCTTCCATTTCTGAAGTTGAGTATGTTTTGTATAATTTGATGGCCATGAATTCGACTGTAACGAAATCCGTCAAGTTCTTTAGGGATTTGGTGTCAAATGTAACAGGAAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1995

Protein Analysis

324

Amino Acids

35.49

Weight (kDa)

9.38

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1995 PF09353 57 - 292 9e-39 Domain of unknown function (DUF1995)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015382)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20680
fragaria_vesca FvH4_3g21740
malus_domestica MD03G1212500.v1.1 MD11G1227700.v1.1
prunus_persica Prupe.4G201600_v2.0.a1
pyrus_communis pycom03g16120
rosa_chinensis RchiOBHm_Chr5g0037211
rosa_laevigata RLG00000033765
rosa_multiflora Rmu_co8240257.1_g000001 Rmu_sc0006633.1_g000004
rosa_roxburghii Rroxscaffold_1G00043760
rosa_rugosa Rorug05G0163800
rosa_samantha Rh5BG255400 Rh5CG288100 Rh5DG263700
rosa_wichuraiana Rw5G023400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 423, 432, 569, 587
AcoI YGGCCR 1 cut(s) 897
AcsI RAATTY 2 cut(s) 513, 904
AcuI CTGAAG 1 cut(s) 888
AfaI GTAC 1 cut(s) 599
AfiI CCNNNNNNNGG 4 cut(s) 568, 607, 631, 632
AflIII ACRYGT 1 cut(s) 206
AgsI TTSAA 5 cut(s) 355, 519, 622, 757, 829
AjiI CACGTC 1 cut(s) 532
AjuI GAANNNNNNNTTGG 2 cut(s) 639, 671
AluBI AGCT 6 cut(s) 262, 271, 337, 527, 664, 832
AluI AGCT 6 cut(s) 262, 271, 337, 527, 664, 832
Alw26I GTCTC 1 cut(s) 215
Ama87I CYCGRG 1 cut(s) 601
AoxI GGCC 4 cut(s) 407, 605, 854, 897
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 2 cut(s) 513, 904
ArsI GACNNNNNNTTYG 2 cut(s) 288, 320
AspLEI GCGC 1 cut(s) 550
AspS9I GGNCC 1 cut(s) 408
AsuC2I CCSGG 4 cut(s) 283, 302, 320, 458
AsuHPI GGTGA 5 cut(s) 154, 244, 671, 703, 797
AvaI CYCGRG 1 cut(s) 601
BalI TGGCCA 1 cut(s) 899
BbvI GCAGC 1 cut(s) 197
BccI CCATC 4 cut(s) 44, 197, 374, 889
BcnI CCSGG 4 cut(s) 283, 302, 320, 458
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 2 cut(s) 398, 852
BfoI RGCGCY 1 cut(s) 551
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 4 cut(s) 283, 302, 320, 458
BmeT110I CYCGRG 1 cut(s) 601
BmgBI CACGTC 1 cut(s) 532
BmgT120I GGNCC 1 cut(s) 408
BmiI GGNNCC 1 cut(s) 382
BmrFI CCNGG 4 cut(s) 283, 302, 320, 458
BmrI ACTGGG 2 cut(s) 380, 461
BmsI GCATC 1 cut(s) 65
BmuI ACTGGG 2 cut(s) 380, 461
BpuEI CTTGAG 1 cut(s) 248
BpuMI CCSGG 4 cut(s) 283, 302, 320, 458
BsaJI CCNNGG 4 cut(s) 281, 318, 456, 602
BsaXI ACNNNNNCTCC 4 cut(s) 404, 434, 581, 611
Bsc4I CCNNNNNNNGG 4 cut(s) 568, 607, 631, 632
Bse118I RCCGGY 1 cut(s) 607
Bse1I ACTGG 2 cut(s) 386, 467
BseDI CCNNGG 4 cut(s) 281, 318, 456, 602
BseGI GGATG 3 cut(s) 56, 189, 393
BseLI CCNNNNNNNGG 4 cut(s) 568, 607, 631, 632
BseMII CTCAG 4 cut(s) 31, 259, 504, 656
BseNI ACTGG 2 cut(s) 386, 467
BseRI GAGGAG 1 cut(s) 79
BseXI GCAGC 1 cut(s) 197
BseYI CCCAGC 2 cut(s) 52, 333
Bsh1285I CGRYCG 1 cut(s) 306
BshFI GGCC 4 cut(s) 409, 607, 856, 899
BsiEI CGRYCG 1 cut(s) 306
BsiHKCI CYCGRG 1 cut(s) 601
BsiSI CCGG 5 cut(s) 283, 302, 320, 458, 608
BslFI GGGAC 2 cut(s) 310, 544
BslI CCNNNNNNNGG 4 cut(s) 568, 607, 631, 632
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 2 cut(s) 310, 544
BsnI GGCC 4 cut(s) 409, 607, 856, 899
BsoBI CYCGRG 1 cut(s) 601
Bsp143I GATC 1 cut(s) 693
BspACI CCGC 4 cut(s) 423, 432, 569, 587
BspANI GGCC 4 cut(s) 409, 607, 856, 899
BspCNI CTCAG 4 cut(s) 30, 258, 503, 657
BspLI GGNNCC 1 cut(s) 382
BspQI GCTCTTC 1 cut(s) 807
BsrFI RCCGGY 1 cut(s) 607
BsrI ACTGG 2 cut(s) 386, 467
BssAI RCCGGY 1 cut(s) 607
BssECI CCNNGG 4 cut(s) 281, 318, 456, 602
BssMI GATC 1 cut(s) 693
Bst4CI ACNGT 4 cut(s) 503, 558, 583, 913
Bst6I CTCTTC 3 cut(s) 97, 102, 807
BstC8I GCNNGC 4 cut(s) 198, 260, 339, 463
BstDEI CTNAG 5 cut(s) 17, 223, 245, 490, 665
BstF5I GGATG 3 cut(s) 56, 189, 393
BstH2I RGCGCY 1 cut(s) 551
BstHHI GCGC 1 cut(s) 550
BstKTI GATC 1 cut(s) 696
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 693
BstMCI CGRYCG 1 cut(s) 306
BstMWI GCNNNNNNNGC 4 cut(s) 268, 431, 440, 533
BstNSI RCATGY 1 cut(s) 210
BstSCI CCNGG 4 cut(s) 281, 300, 318, 456
BstV1I GCAGC 1 cut(s) 197
BsuRI GGCC 4 cut(s) 409, 607, 856, 899
BtrI CACGTC 1 cut(s) 532
BtsCI GGATG 3 cut(s) 56, 189, 393
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 1 cut(s) 543
Cac8I GCNNGC 4 cut(s) 198, 260, 339, 463
CfoI GCGC 1 cut(s) 550
Cfr10I RCCGGY 1 cut(s) 607
Cfr13I GGNCC 1 cut(s) 408
Csp6I GTAC 1 cut(s) 598
CviAII CATG 3 cut(s) 207, 448, 901
CviQI GTAC 1 cut(s) 598
DdeI CTNAG 5 cut(s) 17, 223, 245, 490, 665
DpnI GATC 1 cut(s) 695
DpnII GATC 1 cut(s) 693
EaeI YGGCCR 1 cut(s) 897
Eam1104I CTCTTC 3 cut(s) 97, 102, 807
EarI CTCTTC 3 cut(s) 97, 102, 807
Eco147I AGGCCT 1 cut(s) 856
Eco57I CTGAAG 1 cut(s) 888
Eco88I CYCGRG 1 cut(s) 601
EcoRI GAATTC 1 cut(s) 904
FaeI CATG 3 cut(s) 210, 451, 904
FaqI GGGAC 2 cut(s) 310, 544
FatI CATG 3 cut(s) 206, 447, 900
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 3 cut(s) 43, 176, 380
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 2 cut(s) 398, 852
GlaI GCGC 1 cut(s) 549
GluI GCNGC 1 cut(s) 186
GsaI CCCAGC 2 cut(s) 56, 337
HaeII RGCGCY 1 cut(s) 551
HaeIII GGCC 4 cut(s) 409, 607, 856, 899
HapII CCGG 5 cut(s) 283, 302, 320, 458, 608
HhaI GCGC 1 cut(s) 550
Hin1II CATG 3 cut(s) 210, 451, 904
Hin6I GCGC 1 cut(s) 548
HinP1I GCGC 1 cut(s) 548
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 4 cut(s) 249, 314, 323, 428
HpaII CCGG 5 cut(s) 283, 302, 320, 458, 608
HphI GGTGA 5 cut(s) 154, 244, 671, 703, 797
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 3 cut(s) 20, 248, 868
Hpy188III TCNNGA 1 cut(s) 265
Hpy8I GTNNAC 1 cut(s) 391
HpyAV CCTTC 3 cut(s) 454, 715, 867
HpyCH4III ACNGT 4 cut(s) 503, 558, 583, 913
HpyCH4IV ACGT 1 cut(s) 531
HpyF10VI GCNNNNNNNGC 4 cut(s) 268, 431, 440, 533
HpyF3I CTNAG 5 cut(s) 17, 223, 245, 490, 665
HpySE526I ACGT 1 cut(s) 531
Hsp92II CATG 3 cut(s) 210, 451, 904
HspAI GCGC 1 cut(s) 548
Kzo9I GATC 1 cut(s) 693
LguI GCTCTTC 1 cut(s) 807
LmnI GCTCC 2 cut(s) 161, 386
Lsp1109I GCAGC 1 cut(s) 197
LweI GCATC 1 cut(s) 65
MaeI CTAG 2 cut(s) 398, 852
MaeII ACGT 1 cut(s) 531
MaeIII GTNAC 2 cut(s) 913, 955
MalI GATC 1 cut(s) 695
MboI GATC 1 cut(s) 693
MboII GAAGA 6 cut(s) 5, 84, 89, 343, 656, 824
MlsI TGGCCA 1 cut(s) 899
MluCI AATT 3 cut(s) 513, 889, 904
MluNI TGGCCA 1 cut(s) 899
MlyI GAGTC 3 cut(s) 243, 308, 332
Mox20I TGGCCA 1 cut(s) 899
MscI TGGCCA 1 cut(s) 899
MseI TTAA 1 cut(s) 846
Msp20I TGGCCA 1 cut(s) 899
MspA1I CMGCKG 1 cut(s) 527
MspI CCGG 5 cut(s) 283, 302, 320, 458, 608
MspR9I CCNGG 4 cut(s) 283, 302, 320, 458
MwoI GCNNNNNNNGC 4 cut(s) 268, 431, 440, 533
NciI CCSGG 4 cut(s) 283, 302, 320, 458
NdeII GATC 1 cut(s) 693
NlaIII CATG 3 cut(s) 210, 451, 904
NlaIV GGNNCC 1 cut(s) 382
NspI RCATGY 1 cut(s) 210
PceI AGGCCT 1 cut(s) 856
PciI ACATGT 1 cut(s) 206
PciSI GCTCTTC 1 cut(s) 807
PcsI WCGNNNNNNNCGW 1 cut(s) 914
PfeI GAWTC 1 cut(s) 428
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 3 cut(s) 243, 308, 331
PpsI GAGTC 3 cut(s) 243, 308, 331
PscI ACATGT 1 cut(s) 206
PspFI CCCAGC 2 cut(s) 52, 333
PspN4I GGNNCC 1 cut(s) 382
PspPI GGNCC 1 cut(s) 408
PvuII CAGCTG 1 cut(s) 527
RsaI GTAC 1 cut(s) 599
RsaNI GTAC 1 cut(s) 598
SapI GCTCTTC 1 cut(s) 807
SaqAI TTAA 1 cut(s) 846
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 1 cut(s) 693
Sau96I GGNCC 1 cut(s) 408
SchI GAGTC 3 cut(s) 243, 308, 332
ScrFI CCNGG 4 cut(s) 283, 302, 320, 458
SfaNI GCATC 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 3 cut(s) 513, 889, 904
SseBI AGGCCT 1 cut(s) 856
SsiI CCGC 4 cut(s) 423, 432, 569, 587
SspMI CTAG 2 cut(s) 398, 852
StuI AGGCCT 1 cut(s) 856
StyD4I CCNGG 4 cut(s) 281, 300, 318, 456
TaaI ACNGT 4 cut(s) 503, 558, 583, 913
TaiI ACGT 1 cut(s) 534
TaqI TCGA 2 cut(s) 294, 908
TasI AATT 3 cut(s) 513, 889, 904
TfiI GAWTC 1 cut(s) 428
Tru1I TTAA 1 cut(s) 846
Tru9I TTAA 1 cut(s) 846
TscAI CASTG 1 cut(s) 543
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 4 cut(s) 14, 436, 590, 917
TspGWI ACGGA 1 cut(s) 913
TspRI CASTG 1 cut(s) 543
XapI RAATTY 2 cut(s) 513, 904
XceI RCATGY 1 cut(s) 210
XspI CTAG 2 cut(s) 398, 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.