Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003863

Physical Location & Seq

Genomic Coordinates Forward (+)

7306180 .. 7308434

Gene Structure 2255 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G20860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGACGATTATGAGGTCGTGGAACAGATCGGACGAGGCGCTTTTGGTTCTGCTTTTCTTGTAATTCACAAGTCCGAGAGACGAAAGTATGTGGTTAAGAAGATTCGTTTGGCTAAACAAACAGAGAGATGCAAGCTTGCTGCAATCCAAGAGATGAGTTTGATATCAAAGCTTAAGAGTCCTTATATTGTGGAGTACAAAGATTCTTGGGTTGAAAAGGATTGTGTATGCATTGTAACTAGTTATTGTGAGGGTGGAGACATGACTCAAATGATAAAGAAATCAAGAGGAGTATTCGCGTCCGAAGAAAAACTCTGTAGATGGATGGTGCAGCTACTGTTGGCTATAGATTACCTCCATAACAATCGAGTTCTTCACCGTGACCTTAAGTGCTCCAACATATTCCTCACTAAAGAGAACGAGGTTCGGTTAGGTGACTTTGGCCTAGCAAAACTTCTAGGCAAAGATGATCTTGCTTCCTCGATGGTAGGAACACCAAACTACATGTGCCCTGAACTTCTTGCAGATATACCTTATGGCTACAAATCTGATATTTGGTCTTTAGGTTGTTGTATGTTTGAAGTAGCTGCTCATCAACCGGCCTTCAAGGCTCCTGACATGGCAGCACTCATCAACAAGATTAACCGCTCTTCGCTTTCTCCTCTCCCAGTCATGTATTCCTCTTCATTAAAAAGACTGATCAAAAGTATGTTGCGCAAGAACCCTGAACATAGACCAACTGCTGCAGAATTGCTAAGACATCCACACTTACAGCCATATCTTGCACAATGCCAAAATCTGTCCCCAGTTTTCAAACCGGTTGTGTCCAAATCAGAACACAACACCAACGAAAACAGAACAGGTCTCCCCCCGAAGACCAAATCCGCAAAAACACCCATCAAACACAATCAAGAATCAGAGGAAACAGAGAAGAAAAATAAGGATACGAGCTCTAGTTCAAAAGACAAGGAGAGACCAGCAAAGAGCCAAGAGATGTCAGTGATTAGCACATTAACGTTGCTACGCGAGTTTCAGAAGAAAAGCCCGAAAAGCGAGGAGAGAGCAGAAGCATTGGAATCTTTGTTGGAGCTTTGTGCAGGTTTACTTAGGCAAGAGAAGTTTGATGAGCTTGAAGGAGTCTTGAAACCTTTTGGAGATGAAACAGTTTCATCAAGAGAAACCGCTATTTGGCTTACGAAGAGTCTCATGAATGTAAAGAGAAAGCAAAACGATGATGAAACCAATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006521 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007017 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0010364 GO:0010366 GO:0010565 GO:0010817 GO:0016043 GO:0016310 GO:0019222 GO:0019538 GO:0022622 GO:0030865 GO:0031122 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031335 GO:0031336 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0033238 GO:0033239 GO:0036211 GO:0042762 GO:0043170 GO:0043412 GO:0043622 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045763 GO:0046885 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051175 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0097435 GO:0099402 GO:1900908 GO:1900909 GO:1900911 GO:1900912 GO:1901564 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

416

Amino Acids

47.25

Weight (kDa)

8.91

Isoelectric Point (pI)

48.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 256	1.6e-68	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 253	1.9e-42	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20860
fragaria_vesca	FvH4_6g23080 FvH4_6g23080 FvH4_6g23080 FvH4_6g23080 FvH4_6g23080 FvH4_6g23080 FvH4_6g23080 FvH4_6g23080 FvH4_6g23080 FvH4_6g23080 FvH4_6g23080 FvH4_6g23080 FvH4_6g23080 FvH4_6g23080
malus_domestica	MD12G1065800.v1.1 MD14G1065800.v1.1
prunus_persica	Prupe.7G068700_v2.0.a1
pyrus_communis	pycom12g05710 pycom14g05320
rosa_chinensis	RchiOBHm_Chr3g0480931
rosa_laevigata	RLG00000023440
rosa_multiflora	Rmu_sc0006028.1_g000015 Rmu_sc0006048.1_g000005
rosa_roxburghii	Rroxscaffold_6G00400870
rosa_rugosa	Rorug03G0187700 Rorug03G0187800 Rorug03G0187900 Rorug03G0188000
rosa_samantha	Rh3AG239200 Rh3BG273400 Rh3CG269000 Rh3DG265000
rosa_wichuraiana	Rw3G021400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	716
Acc36I	ACCTGC	1 cut(s)	1088
AccBSI	CCGCTC	1 cut(s)	648
AccII	CGCG	2 cut(s)	299, 1026
AciI	CCGC	3 cut(s)	646, 885, 1182
AclI	AACGTT	1 cut(s)	1016
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	1188
AflII	CTTAAG	2 cut(s)	173, 386
AflIII	ACRYGT	1 cut(s)	504
AgeI	ACCGGT	1 cut(s)	817
AgsI	TTSAA	7 cut(s)	215, 581, 607, 814, 960, 1133, 1144
AhlI	ACTAGT	1 cut(s)	239
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	7 cut(s)	136, 172, 334, 587, 951, 1090, 1129
AluI	AGCT	7 cut(s)	136, 172, 334, 587, 951, 1090, 1129
Alw21I	GWGCWC	2 cut(s)	395, 953
Alw26I	GTCTC	5 cut(s)	73, 252, 869, 967, 1208
AlwNI	CAGNNNCTG	1 cut(s)	337
AoxI	GGCC	2 cut(s)	442, 600
ApeKI	GCWGC	5 cut(s)	140, 331, 587, 623, 743
AsiGI	ACCGGT	1 cut(s)	817
AspLEI	GCGC	2 cut(s)	41, 717
AsuHPI	GGTGA	2 cut(s)	368, 446
BaeGI	GKGCMC	1 cut(s)	512
BanII	GRGCYC	1 cut(s)	953
BbsI	GAAGAC	1 cut(s)	881
Bbv12I	GWGCWC	2 cut(s)	395, 953
BbvI	GCAGC	5 cut(s)	127, 343, 574, 635, 730
BccI	CCATC	4 cut(s)	315, 319, 478, 905
BciVI	GTATCC	1 cut(s)	937
BclI	TGATCA	1 cut(s)	699
BcoDI	GTCTC	5 cut(s)	73, 252, 869, 967, 1208
BcuI	ACTAGT	1 cut(s)	239
BfaI	CTAG	4 cut(s)	240, 446, 458, 954
BfmI	CTRYAG	3 cut(s)	316, 345, 744
BfoI	RGCGCY	1 cut(s)	42
BfrI	CTTAAG	2 cut(s)	173, 386
BfuAI	ACCTGC	1 cut(s)	1088
BfuI	GTATCC	1 cut(s)	937
BglI	GCCNNNNNGGC	1 cut(s)	608
BisI	GCNGC	5 cut(s)	141, 332, 588, 624, 744
BlsI	GCNGC	5 cut(s)	142, 333, 589, 625, 745
BmiI	GGNNCC	1 cut(s)	612
BmrI	ACTGGG	2 cut(s)	662, 800
BmsI	GCATC	1 cut(s)	119
BmuI	ACTGGG	2 cut(s)	662, 800
BpiI	GAAGAC	1 cut(s)	881
BsaI	GGTCTC	2 cut(s)	869, 967
BsaWI	WCCGGW	1 cut(s)	817
Bsc4I	CCNNNNNNNGG	1 cut(s)	1188
Bse118I	RCCGGY	2 cut(s)	598, 817
Bse1I	ACTGG	2 cut(s)	668, 806
BseGI	GGATG	2 cut(s)	330, 760
BseLI	CCNNNNNNNGG	1 cut(s)	1188
BseNI	ACTGG	2 cut(s)	668, 806
BseRI	GAGGAG	3 cut(s)	303, 651, 1070
BseSI	GKGCMC	1 cut(s)	512
BseXI	GCAGC	5 cut(s)	127, 343, 574, 635, 730
BsgI	GTGCAG	2 cut(s)	350, 1116
Bsh1236I	CGCG	2 cut(s)	299, 1026
BshFI	GGCC	2 cut(s)	444, 602
BshTI	ACCGGT	1 cut(s)	817
BsiHKAI	GWGCWC	2 cut(s)	395, 953
BsiSI	CCGG	2 cut(s)	599, 818
BslFI	GGGAC	1 cut(s)	787
BslI	CCNNNNNNNGG	1 cut(s)	1188
BsmAI	GTCTC	5 cut(s)	73, 252, 869, 967, 1208
BsmBI	CGTCTC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	787
BsnI	GGCC	2 cut(s)	444, 602
Bso31I	GGTCTC	2 cut(s)	869, 967
Bsp1286I	GDGCHC	3 cut(s)	395, 512, 953
Bsp143I	GATC	3 cut(s)	27, 469, 699
BspACI	CCGC	3 cut(s)	646, 885, 1182
BspANI	GGCC	2 cut(s)	444, 602
BspFNI	CGCG	2 cut(s)	299, 1026
BspHI	TCATGA	1 cut(s)	1206
BspLI	GGNNCC	1 cut(s)	612
BspMAI	CTGCAG	1 cut(s)	748
BspMI	ACCTGC	1 cut(s)	1088
BspQI	GCTCTTC	1 cut(s)	655
BspTI	CTTAAG	2 cut(s)	173, 386
BspTNI	GGTCTC	2 cut(s)	869, 967
BsrBI	CCGCTC	1 cut(s)	648
BsrFI	RCCGGY	2 cut(s)	598, 817
BsrI	ACTGG	2 cut(s)	668, 806
BssAI	RCCGGY	2 cut(s)	598, 817
BssMI	GATC	3 cut(s)	27, 469, 699
Bst4CI	ACNGT	3 cut(s)	339, 380, 1165
Bst6I	CTCTTC	3 cut(s)	655, 688, 1193
BstAFI	CTTAAG	2 cut(s)	173, 386
BstC8I	GCNNGC	2 cut(s)	134, 138
BstDEI	CTNAG	2 cut(s)	755, 1106
BstF5I	GGATG	2 cut(s)	330, 760
BstFNI	CGCG	2 cut(s)	299, 1026
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	2 cut(s)	41, 717
BstKTI	GATC	3 cut(s)	30, 472, 702
BstMAI	GTCTC	5 cut(s)	73, 252, 869, 967, 1208
BstMBI	GATC	3 cut(s)	27, 469, 699
BstMWI	GCNNNNNNNGC	2 cut(s)	608, 1050
BstNSI	RCATGY	1 cut(s)	508
BstSFI	CTRYAG	3 cut(s)	316, 345, 744
BstSLI	GKGCMC	1 cut(s)	512
BstUI	CGCG	2 cut(s)	299, 1026
BstV1I	GCAGC	5 cut(s)	127, 343, 574, 635, 730
BstV2I	GAAGAC	1 cut(s)	881
BsuI	GTATCC	1 cut(s)	937
BsuRI	GGCC	2 cut(s)	444, 602
BtsCI	GGATG	2 cut(s)	330, 760
BtsIMutI	CAGTG	1 cut(s)	1005
BveI	ACCTGC	1 cut(s)	1088
Cac8I	GCNNGC	2 cut(s)	134, 138
CaiI	CAGNNNCTG	1 cut(s)	337
CciI	TCATGA	1 cut(s)	1206
CfoI	GCGC	2 cut(s)	41, 717
Cfr10I	RCCGGY	2 cut(s)	598, 817
CseI	GACGC	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	196
CspAI	ACCGGT	1 cut(s)	817
CviAII	CATG	5 cut(s)	262, 505, 619, 673, 1207
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	2 cut(s)	755, 1106
DpnI	GATC	3 cut(s)	29, 471, 701
DpnII	GATC	3 cut(s)	27, 469, 699
Eam1104I	CTCTTC	3 cut(s)	655, 688, 1193
EarI	CTCTTC	3 cut(s)	655, 688, 1193
Ecl136II	GAGCTC	1 cut(s)	951
Eco24I	GRGCYC	1 cut(s)	953
Eco31I	GGTCTC	2 cut(s)	869, 967
Eco32I	GATATC	1 cut(s)	165
Eco53kI	GAGCTC	1 cut(s)	951
EcoICRI	GAGCTC	1 cut(s)	951
EcoRV	GATATC	1 cut(s)	165
EcoT22I	ATGCAT	1 cut(s)	233
EcoT38I	GRGCYC	1 cut(s)	953
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	5 cut(s)	265, 508, 622, 676, 1210
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FaqI	GGGAC	1 cut(s)	787
FatI	CATG	5 cut(s)	261, 504, 618, 672, 1206
FbaI	TGATCA	1 cut(s)	699
Fnu4HI	GCNGC	5 cut(s)	141, 332, 588, 624, 744
FokI	GGATG	2 cut(s)	337, 747
FriOI	GRGCYC	1 cut(s)	953
Fsp4HI	GCNGC	5 cut(s)	141, 332, 588, 624, 744
FspBI	CTAG	4 cut(s)	240, 446, 458, 954
FspI	TGCGCA	1 cut(s)	716
GlaI	GCGC	2 cut(s)	40, 716
GluI	GCNGC	5 cut(s)	141, 332, 588, 624, 744
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	444, 602
HapII	CCGG	2 cut(s)	599, 818
HgaI	GACGC	1 cut(s)	288
HhaI	GCGC	2 cut(s)	41, 717
Hin1II	CATG	5 cut(s)	265, 508, 622, 676, 1210
Hin6I	GCGC	2 cut(s)	39, 715
HinP1I	GCGC	2 cut(s)	39, 715
HindIII	AAGCTT	2 cut(s)	134, 170
HinfI	GANTC	8 cut(s)	103, 178, 203, 265, 914, 1076, 1137, 1201
HpaII	CCGG	2 cut(s)	599, 818
HphI	GGTGA	2 cut(s)	368, 446
Hpy166II	GTNNAC	1 cut(s)	1103
Hpy188I	TCNGA	7 cut(s)	32, 76, 304, 550, 835, 919, 1035
Hpy188III	TCNNGA	6 cut(s)	285, 614, 911, 1141, 1173, 1207
Hpy8I	GTNNAC	1 cut(s)	1103
HpyAV	CCTTC	2 cut(s)	613, 1127
HpyCH4III	ACNGT	3 cut(s)	339, 380, 1165
HpyCH4IV	ACGT	1 cut(s)	1016
HpyCH4V	TGCA	8 cut(s)	132, 143, 231, 331, 524, 746, 785, 1097
HpyF10VI	GCNNNNNNNGC	2 cut(s)	608, 1050
HpyF3I	CTNAG	2 cut(s)	755, 1106
HpySE526I	ACGT	1 cut(s)	1016
Hsp92II	CATG	5 cut(s)	265, 508, 622, 676, 1210
HspAI	GCGC	2 cut(s)	39, 715
Ksp22I	TGATCA	1 cut(s)	699
Kzo9I	GATC	3 cut(s)	27, 469, 699
LguI	GCTCTTC	1 cut(s)	655
LmnI	GCTCC	3 cut(s)	398, 616, 1087
Lsp1109I	GCAGC	5 cut(s)	127, 343, 574, 635, 730
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	4 cut(s)	240, 446, 458, 954
MaeII	ACGT	1 cut(s)	1016
MaeIII	GTNAC	3 cut(s)	235, 380, 434
MalI	GATC	3 cut(s)	29, 471, 701
MbiI	CCGCTC	1 cut(s)	648
MboI	GATC	3 cut(s)	27, 469, 699
MboII	GAAGA	9 cut(s)	112, 317, 365, 642, 675, 886, 943, 1048, 1210
MhlI	GDGCHC	3 cut(s)	395, 512, 953
MluCI	AATT	2 cut(s)	63, 749
MlyI	GAGTC	4 cut(s)	187, 259, 1146, 1210
MmeI	TCCRAC	2 cut(s)	420, 1065
Mph1103I	ATGCAT	1 cut(s)	233
MseI	TTAA	7 cut(s)	96, 174, 387, 642, 689, 1013, 1249
MspCI	CTTAAG	2 cut(s)	173, 386
MspI	CCGG	2 cut(s)	599, 818
MvnI	CGCG	2 cut(s)	299, 1026
MwoI	GCNNNNNNNGC	2 cut(s)	608, 1050
NdeII	GATC	3 cut(s)	27, 469, 699
NlaIII	CATG	5 cut(s)	265, 508, 622, 676, 1210
NlaIV	GGNNCC	1 cut(s)	612
NmuCI	GTSAC	2 cut(s)	380, 434
NsbI	TGCGCA	1 cut(s)	716
NsiI	ATGCAT	1 cut(s)	233
NspI	RCATGY	1 cut(s)	508
PagI	TCATGA	1 cut(s)	1206
PciI	ACATGT	1 cut(s)	504
PciSI	GCTCTTC	1 cut(s)	655
PfeI	GAWTC	4 cut(s)	103, 203, 914, 1076
PinAI	ACCGGT	1 cut(s)	817
PkrI	GCNGC	5 cut(s)	142, 333, 589, 625, 745
PleI	GAGTC	4 cut(s)	186, 259, 1145, 1209
PpsI	GAGTC	4 cut(s)	186, 259, 1145, 1209
PscI	ACATGT	1 cut(s)	504
Psp124BI	GAGCTC	1 cut(s)	953
Psp1406I	AACGTT	1 cut(s)	1016
PspN4I	GGNNCC	1 cut(s)	612
PstI	CTGCAG	1 cut(s)	748
PstNI	CAGNNNCTG	1 cut(s)	337
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SacI	GAGCTC	1 cut(s)	953
SapI	GCTCTTC	1 cut(s)	655
SaqAI	TTAA	7 cut(s)	96, 174, 387, 642, 689, 1013, 1249
SatI	GCNGC	5 cut(s)	141, 332, 588, 624, 744
Sau3AI	GATC	3 cut(s)	27, 469, 699
SchI	GAGTC	4 cut(s)	187, 259, 1146, 1210
SduI	GDGCHC	3 cut(s)	395, 512, 953
SfaNI	GCATC	1 cut(s)	119
SfcI	CTRYAG	3 cut(s)	316, 345, 744
SmlI	CTYRAG	2 cut(s)	173, 386
SmoI	CTYRAG	2 cut(s)	173, 386
SpeI	ACTAGT	1 cut(s)	239
Sse9I	AATT	2 cut(s)	63, 749
SsiI	CCGC	3 cut(s)	646, 885, 1182
SspI	AATATT	1 cut(s)	1246
SspMI	CTAG	4 cut(s)	240, 446, 458, 954
SstI	GAGCTC	1 cut(s)	953
TaaI	ACNGT	3 cut(s)	339, 380, 1165
TaiI	ACGT	1 cut(s)	1019
TaqI	TCGA	2 cut(s)	367, 482
TasI	AATT	2 cut(s)	63, 749
TatI	WGTACW	1 cut(s)	195
TfiI	GAWTC	4 cut(s)	103, 203, 914, 1076
Tru1I	TTAA	7 cut(s)	96, 174, 387, 642, 689, 1013, 1249
Tru9I	TTAA	7 cut(s)	96, 174, 387, 642, 689, 1013, 1249
TscAI	CASTG	1 cut(s)	1005
TseFI	GTSAC	2 cut(s)	380, 434
TseI	GCWGC	5 cut(s)	140, 331, 587, 623, 743
Tsp45I	GTSAC	2 cut(s)	380, 434
TspDTI	ATGAA	5 cut(s)	675, 1158, 1173, 1223, 1251
TspRI	CASTG	1 cut(s)	1005
Vha464I	CTTAAG	2 cut(s)	173, 386
XceI	RCATGY	1 cut(s)	508
XspI	CTAG	4 cut(s)	240, 446, 458, 954
Zsp2I	ATGCAT	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.