Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003863

Physical Location & Seq

Genomic Coordinates Forward (+)

5089158 .. 5093987

Gene Structure 4830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g05320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGGAGGATTATGAAGTAATAGAGCAGATTGGTAGAGGGGCTTTTGGAGCCGCTTTTCTTGTTCTTCATAAGACTCAGAAAAAGAAGTATGTGTTGAAAAAAATTCGTTTGGCTAAGCAATCAGAGAAGTTCAAACGCACAGCTCACCAAGAGATGAATTTAATTGCAAAGTTAAATCATCCATATATTGTGGATTATAAAGATGCTTGGGTGGACAAGGGAGACTGCATATGCATTGTAACGGGCTATTGTGAAGGAGGTGACATGGTTGATATGATAAAGAAGGCCAGAGGACAATTTTTTCCAGAGGAGAAGCTCTGCAAATGGCTGACTCAGTTGTTGCTAGCTGTGGACTACTTGCACTCCAATCGTGTACTTCATAGGGATCTCAAGTGCTCTAATATATTCCTTACTAAGGACAATGACATCCGACTTGGTGACTTTGGGCTTGCAAAACTACTCAACACAGAAGATCTTACTTCTTCGGTTGTTGGAACTCCAAACTACATGTGTCCTGAGCTCCTCGCAGATATACCTTATGGCTATAAATCTGATATATGGTCCCTTGGTTGCTGTATGTTTGAGATTGCTGCACATCAACCTGCATTTAGAGCGCCTGACATGGCTGGACTTATCAACAAAATAAACAGATCCATCATTTCTCCTCTTCCAATTGTGTATTCTTCCACACTGAAACAAATCATCAAGAGCATGCTCAGGAAAAGTCCAGAACACAGACCAACAGCTGTAGAGTTAATAAGGCATCCACACTTACAACCATACATCCTTCAATGCCGCAATGCATCATCTGTTTTTCTTCCGGTATATCCACTACCCAACTTAAAAGATAAAACTCCAAGAAAATCACCACCTAGCAAGCGCAGCAGTGGCAAAGACAACAAAGACAAAGAGGCTGAAAAAACGAACCACGTGGAAAAGGTCCAACCATTTGGGAGCAGTGCTGATCTGACGCATAGATATGTAACAGACATTGATAACCCTGTATTCACATCTAGTGCAGAAGAGCTTGAAACCAAGAGAGTCGATCCTAGTAGCTGTTCTGTGGAATTATCCAATGCCACCGATGGTTCAAAAGATGGACCGACTGATTCAGAAGCATCTATTTGTGATAAGCAAGCTGATACTATCAGTATAACGGAAAAGGAAAATACTGAACCTGACATTGAGGTTACTTTAGAAAGCGTATCAAATTCTCAGCATGAAGGACTAGAAGAACCAACTGCCTCAAATTTCAAACAACTGCAAGAGGTTGATGCCAAGACTCCAAACAGTGAGGATGGAAAGGCATATGAAAATCAACAAGTTCTTGAAGGAGCTAAAGCAAGAGAGGGGGCAATTGAAGAAAATTGCAGGTTATTGTCAGCGTCCAGTGTAGGTGGCACCGAAAAGGTTGGGTCGATTGATGATAAATTTGATCCTAGTAGCTTTGCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

486

Amino Acids

54.06

Weight (kDa)

5.83

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 257	8.8e-68	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 254	4.2e-41	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003863)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20860
fragaria_vesca	FvH4_6g23080 FvH4_6g23080 FvH4_6g23080 FvH4_6g23080 FvH4_6g23080 FvH4_6g23080 FvH4_6g23080 FvH4_6g23080 FvH4_6g23080 FvH4_6g23080 FvH4_6g23080 FvH4_6g23080 FvH4_6g23080 FvH4_6g23080
malus_domestica	MD12G1065800.v1.1 MD14G1065800.v1.1
prunus_persica	Prupe.7G068700_v2.0.a1
pyrus_communis	pycom12g05710 pycom14g05320
rosa_chinensis	RchiOBHm_Chr3g0480931
rosa_laevigata	RLG00000023440
rosa_multiflora	Rmu_sc0006028.1_g000015 Rmu_sc0006048.1_g000005
rosa_roxburghii	Rroxscaffold_6G00400870
rosa_rugosa	Rorug03G0187700 Rorug03G0187800 Rorug03G0187900 Rorug03G0188000
rosa_samantha	Rh3AG239200 Rh3BG273400 Rh3CG269000 Rh3DG265000
rosa_wichuraiana	Rw3G021400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	198
Acc36I	ACCTGC	2 cut(s)	610, 1362
AccB1I	GGYRCC	1 cut(s)	1400
AciI	CCGC	2 cut(s)	51, 796
AclWI	GGATC	4 cut(s)	393, 645, 1040, 1430
AcsI	RAATTY	5 cut(s)	102, 157, 1210, 1249, 1430
AcvI	CACGTG	1 cut(s)	931
AfaI	GTAC	1 cut(s)	375
AfiI	CCNNNNNNNGG	1 cut(s)	415
AflIII	ACRYGT	1 cut(s)	507
AgsI	TTSAA	8 cut(s)	97, 133, 791, 1031, 1092, 1255, 1331, 1361
AjuI	GAANNNNNNNTTGG	2 cut(s)	664, 696
Alw21I	GWGCWC	2 cut(s)	398, 522
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	4 cut(s)	393, 645, 1040, 1430
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	2 cut(s)	590, 882
ApoI	RAATTY	5 cut(s)	102, 157, 1210, 1249, 1430
AspLEI	GCGC	2 cut(s)	616, 882
AspS9I	GGNCC	3 cut(s)	561, 940, 1100
AsuHPI	GGTGA	4 cut(s)	137, 272, 449, 858
AsuNHI	GCTAGC	1 cut(s)	343
AvaII	GGWCC	3 cut(s)	561, 940, 1100
BanI	GGYRCC	1 cut(s)	1400
BanII	GRGCYC	1 cut(s)	522
BbrPI	CACGTG	1 cut(s)	931
Bbv12I	GWGCWC	2 cut(s)	398, 522
BbvI	GCAGC	2 cut(s)	577, 894
BccI	CCATC	4 cut(s)	662, 1079, 1091, 1292
BcgI	CGANNNNNNTGC	2 cut(s)	350, 384
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	6 cut(s)	344, 873, 1014, 1050, 1229, 1440
BfmI	CTRYAG	1 cut(s)	747
BfoI	RGCGCY	1 cut(s)	617
BfuAI	ACCTGC	2 cut(s)	610, 1362
BglII	AGATCT	1 cut(s)	472
BisI	GCNGC	4 cut(s)	51, 591, 796, 883
BlpI	GCTNAGC	1 cut(s)	114
BlsI	GCNGC	4 cut(s)	52, 592, 797, 884
Bme18I	GGWCC	3 cut(s)	561, 940, 1100
BmgT120I	GGNCC	3 cut(s)	561, 940, 1100
BmiI	GGNNCC	3 cut(s)	49, 563, 1402
BmsI	GCATC	5 cut(s)	193, 772, 812, 1127, 1264
BmtI	GCTAGC	1 cut(s)	347
Bpu10I	CCTNAGC	2 cut(s)	516, 716
Bpu1102I	GCTNAGC	1 cut(s)	114
BpuEI	CTTGAG	1 cut(s)	374
BsaAI	YACGTR	1 cut(s)	931
BsaJI	CCNNGG	1 cut(s)	565
BsaWI	WCCGGW	1 cut(s)	820
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	1 cut(s)	1389
Bse3DI	GCAATG	1 cut(s)	805
BseDI	CCNNGG	1 cut(s)	565
BseGI	GGATG	5 cut(s)	178, 426, 763, 783, 1303
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMI	GCAATG	1 cut(s)	805
BseMII	CTCAG	5 cut(s)	89, 347, 507, 730, 1229
BseNI	ACTGG	1 cut(s)	1389
BseRI	GAGGAG	3 cut(s)	323, 512, 654
BseXI	GCAGC	2 cut(s)	577, 894
BsgI	GTGCAG	2 cut(s)	576, 1038
BshFI	GGCC	1 cut(s)	287
BshNI	GGYRCC	1 cut(s)	1400
BsiHKAI	GWGCWC	2 cut(s)	398, 522
BsiSI	CCGG	1 cut(s)	821
BslFI	GGGAC	1 cut(s)	547
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	1 cut(s)	216
BsmFI	GGGAC	1 cut(s)	547
BsnI	GGCC	1 cut(s)	287
Bsp1286I	GDGCHC	2 cut(s)	398, 522
Bsp143I	GATC	6 cut(s)	385, 472, 650, 964, 1045, 1435
Bsp1720I	GCTNAGC	1 cut(s)	114
BspACI	CCGC	2 cut(s)	51, 796
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	5 cut(s)	88, 346, 508, 729, 1228
BspLI	GGNNCC	3 cut(s)	49, 563, 1402
BspMI	ACCTGC	2 cut(s)	610, 1362
BspOI	GCTAGC	1 cut(s)	347
BspPI	GGATC	4 cut(s)	393, 645, 1040, 1430
BspQI	GCTCTTC	1 cut(s)	1017
BspT107I	GGYRCC	1 cut(s)	1400
BsrDI	GCAATG	1 cut(s)	805
BsrI	ACTGG	1 cut(s)	1389
BssECI	CCNNGG	1 cut(s)	565
BssMI	GATC	6 cut(s)	385, 472, 650, 964, 1045, 1435
BssT1I	CCWWGG	1 cut(s)	565
Bst4CI	ACNGT	1 cut(s)	1292
Bst6I	CTCTTC	2 cut(s)	672, 1017
BstBAI	YACGTR	1 cut(s)	931
BstC8I	GCNNGC	5 cut(s)	345, 450, 713, 878, 1137
BstDEI	CTNAG	7 cut(s)	75, 114, 333, 414, 516, 716, 1215
BstENI	CCTNNNNNAGG	1 cut(s)	413
BstF5I	GGATG	5 cut(s)	178, 426, 763, 783, 1303
BstH2I	RGCGCY	1 cut(s)	617
BstHHI	GCGC	2 cut(s)	616, 882
BstKTI	GATC	6 cut(s)	388, 475, 653, 967, 1048, 1438
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	6 cut(s)	385, 472, 650, 964, 1045, 1435
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 611, 882, 888
BstNSI	RCATGY	2 cut(s)	511, 715
BstSFI	CTRYAG	1 cut(s)	747
BstV1I	GCAGC	2 cut(s)	577, 894
BstX2I	RGATCY	3 cut(s)	385, 472, 650
BstXI	CCANNNNNNTGG	1 cut(s)	950
BstYI	RGATCY	3 cut(s)	385, 472, 650
BsuRI	GGCC	1 cut(s)	287
BtsCI	GGATG	5 cut(s)	178, 426, 763, 783, 1303
BtsI	GCAGTG	2 cut(s)	892, 964
BtsIMutI	CAGTG	5 cut(s)	689, 892, 964, 1297, 1396
BveI	ACCTGC	2 cut(s)	610, 1362
Cac8I	GCNNGC	5 cut(s)	345, 450, 713, 878, 1137
CfoI	GCGC	2 cut(s)	616, 882
Cfr13I	GGNCC	3 cut(s)	561, 940, 1100
CseI	GACGC	2 cut(s)	979, 1374
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	5 cut(s)	265, 508, 622, 712, 1220
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	7 cut(s)	75, 114, 333, 414, 516, 716, 1215
DpnI	GATC	6 cut(s)	387, 474, 652, 966, 1047, 1437
DpnII	GATC	6 cut(s)	385, 472, 650, 964, 1045, 1435
Eam1104I	CTCTTC	2 cut(s)	672, 1017
EarI	CTCTTC	2 cut(s)	672, 1017
Ecl136II	GAGCTC	1 cut(s)	520
Eco130I	CCWWGG	1 cut(s)	565
Eco24I	GRGCYC	1 cut(s)	522
Eco47I	GGWCC	3 cut(s)	561, 940, 1100
Eco53kI	GAGCTC	1 cut(s)	520
Eco72I	CACGTG	1 cut(s)	931
EcoICRI	GAGCTC	1 cut(s)	520
EcoNI	CCTNNNNNAGG	1 cut(s)	413
EcoT14I	CCWWGG	1 cut(s)	565
EcoT22I	ATGCAT	2 cut(s)	236, 805
EcoT38I	GRGCYC	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	565
FaeI	CATG	5 cut(s)	268, 511, 625, 715, 1223
FaqI	GGGAC	1 cut(s)	547
FatI	CATG	5 cut(s)	264, 507, 621, 711, 1219
FauNDI	CATATG	2 cut(s)	230, 1309
Fnu4HI	GCNGC	4 cut(s)	51, 591, 796, 883
FokI	GGATG	5 cut(s)	165, 413, 750, 770, 1310
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	4 cut(s)	51, 591, 796, 883
FspBI	CTAG	6 cut(s)	344, 873, 1014, 1050, 1229, 1440
GlaI	GCGC	2 cut(s)	615, 881
GluI	GCNGC	4 cut(s)	51, 591, 796, 883
HaeII	RGCGCY	1 cut(s)	617
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	1 cut(s)	821
HgaI	GACGC	2 cut(s)	979, 1374
HhaI	GCGC	2 cut(s)	616, 882
Hin1II	CATG	5 cut(s)	268, 511, 625, 715, 1223
Hin6I	GCGC	2 cut(s)	614, 880
HinP1I	GCGC	2 cut(s)	614, 880
HinfI	GANTC	5 cut(s)	73, 331, 1041, 1109, 1282
HpaII	CCGG	1 cut(s)	821
HphI	GGTGA	4 cut(s)	137, 272, 449, 858
Hpy166II	GTNNAC	3 cut(s)	214, 352, 374
Hpy188I	TCNGA	6 cut(s)	78, 124, 431, 553, 969, 1114
Hpy188III	TCNNGA	6 cut(s)	305, 515, 706, 718, 728, 1328
Hpy8I	GTNNAC	3 cut(s)	214, 352, 374
HpyAV	CCTTC	5 cut(s)	248, 277, 797, 1217, 1325
HpyCH4III	ACNGT	1 cut(s)	1292
HpyCH4IV	ACGT	1 cut(s)	930
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 611, 882, 888
HpyF3I	CTNAG	7 cut(s)	75, 114, 333, 414, 516, 716, 1215
HpySE526I	ACGT	1 cut(s)	930
Hsp92II	CATG	5 cut(s)	268, 511, 625, 715, 1223
HspAI	GCGC	2 cut(s)	614, 880
Kzo9I	GATC	6 cut(s)	385, 472, 650, 964, 1045, 1435
LguI	GCTCTTC	1 cut(s)	1017
LmnI	GCTCC	4 cut(s)	47, 525, 954, 1334
Lsp1109I	GCAGC	2 cut(s)	577, 894
LweI	GCATC	5 cut(s)	193, 772, 812, 1127, 1264
MaeI	CTAG	6 cut(s)	344, 873, 1014, 1050, 1229, 1440
MaeII	ACGT	1 cut(s)	930
MaeIII	GTNAC	5 cut(s)	238, 260, 437, 982, 1189
MalI	GATC	6 cut(s)	387, 474, 652, 966, 1047, 1437
MboI	GATC	6 cut(s)	385, 472, 650, 964, 1045, 1435
MboII	GAAGA	9 cut(s)	56, 474, 482, 659, 675, 809, 1034, 1244, 1373
MfeI	CAATTG	2 cut(s)	672, 1356
MflI	RGATCY	3 cut(s)	385, 472, 650
MhlI	GDGCHC	2 cut(s)	398, 522
MlyI	GAGTC	4 cut(s)	67, 325, 1050, 1276
MmeI	TCCRAC	3 cut(s)	454, 472, 967
Mph1103I	ATGCAT	2 cut(s)	236, 805
MseI	TTAA	4 cut(s)	161, 173, 755, 842
MslI	CAYNNNNRTG	1 cut(s)	978
MspA1I	CMGCKG	1 cut(s)	746
MspI	CCGG	1 cut(s)	821
MunI	CAATTG	2 cut(s)	672, 1356
MwoI	GCNNNNNNNGC	4 cut(s)	47, 611, 882, 888
NdeI	CATATG	2 cut(s)	230, 1309
NdeII	GATC	6 cut(s)	385, 472, 650, 964, 1045, 1435
NheI	GCTAGC	1 cut(s)	343
NlaIII	CATG	5 cut(s)	268, 511, 625, 715, 1223
NlaIV	GGNNCC	3 cut(s)	49, 563, 1402
NmuCI	GTSAC	2 cut(s)	260, 437
NsiI	ATGCAT	2 cut(s)	236, 805
NspI	RCATGY	2 cut(s)	511, 715
PaeI	GCATGC	1 cut(s)	715
PciI	ACATGT	1 cut(s)	507
PciSI	GCTCTTC	1 cut(s)	1017
PfeI	GAWTC	1 cut(s)	1109
PkrI	GCNGC	4 cut(s)	52, 592, 797, 884
PleI	GAGTC	4 cut(s)	67, 325, 1049, 1276
PmaCI	CACGTG	1 cut(s)	931
PmlI	CACGTG	1 cut(s)	931
PpsI	GAGTC	4 cut(s)	67, 325, 1049, 1276
Ppu21I	YACGTR	1 cut(s)	931
PscI	ACATGT	1 cut(s)	507
PsiI	TTATAA	1 cut(s)	198
Psp124BI	GAGCTC	1 cut(s)	522
PspCI	CACGTG	1 cut(s)	931
PspN4I	GGNNCC	3 cut(s)	49, 563, 1402
PspPI	GGNCC	3 cut(s)	561, 940, 1100
PsuI	RGATCY	3 cut(s)	385, 472, 650
PvuII	CAGCTG	1 cut(s)	746
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
RseI	CAYNNNNRTG	1 cut(s)	978
SacI	GAGCTC	1 cut(s)	522
SapI	GCTCTTC	1 cut(s)	1017
SaqAI	TTAA	4 cut(s)	161, 173, 755, 842
SatI	GCNGC	4 cut(s)	51, 591, 796, 883
Sau3AI	GATC	6 cut(s)	385, 472, 650, 964, 1045, 1435
Sau96I	GGNCC	3 cut(s)	561, 940, 1100
SchI	GAGTC	4 cut(s)	67, 325, 1050, 1276
SduI	GDGCHC	2 cut(s)	398, 522
SfaNI	GCATC	5 cut(s)	193, 772, 812, 1127, 1264
SfcI	CTRYAG	1 cut(s)	747
SinI	GGWCC	3 cut(s)	561, 940, 1100
SmiMI	CAYNNNNRTG	1 cut(s)	978
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
SphI	GCATGC	1 cut(s)	715
SsiI	CCGC	2 cut(s)	51, 796
SspMI	CTAG	6 cut(s)	344, 873, 1014, 1050, 1229, 1440
SstI	GAGCTC	1 cut(s)	522
StyI	CCWWGG	1 cut(s)	565
TaaI	ACNGT	1 cut(s)	1292
TaiI	ACGT	1 cut(s)	933
TaqI	TCGA	2 cut(s)	1044, 1418
TaqII	GACCGA	1 cut(s)	1117
TatI	WGTACW	1 cut(s)	373
TauI	GCSGC	2 cut(s)	53, 798
TfiI	GAWTC	1 cut(s)	1109
Tru1I	TTAA	4 cut(s)	161, 173, 755, 842
Tru9I	TTAA	4 cut(s)	161, 173, 755, 842
TscAI	CASTG	5 cut(s)	696, 892, 964, 1297, 1396
TseFI	GTSAC	2 cut(s)	260, 437
TseI	GCWGC	2 cut(s)	590, 882
Tsp45I	GTSAC	2 cut(s)	260, 437
TspDTI	ATGAA	6 cut(s)	27, 56, 170, 368, 1236, 1326
TspGWI	ACGGA	1 cut(s)	1172
TspRI	CASTG	5 cut(s)	696, 892, 964, 1297, 1396
VpaK11BI	GGWCC	3 cut(s)	561, 940, 1100
XagI	CCTNNNNNAGG	1 cut(s)	413
XapI	RAATTY	5 cut(s)	102, 157, 1210, 1249, 1430
XceI	RCATGY	2 cut(s)	511, 715
XspI	CTAG	6 cut(s)	344, 873, 1014, 1050, 1229, 1440
Zsp2I	ATGCAT	2 cut(s)	236, 805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.