Rorug03G0187700

Zinc finger A20 and AN1 domain-containing stress-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000730
Physical Location & Seq
Reverse (-)
16332389 .. 16336245
3857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0187700.1

Sequence Viewer

Length: 438 bp
ATGCCTAAGGTAAAGACTAATCGAGTCAACTACCCAGAAGGCTGGGAACTGATCGAGCCTACTCTTCGCGAACTGCAAGCAAAGATGAGAGAAGCTGAGAATGATACTCATGATGGTAAGAGGAAATGTGAAACCTTATGGCCTATTTTCAAAATTGCGCATCAAAAGAGCCGTTACATTTTTGACCTTTACCATCGGAGAAAAGAAATTTCCAAGGAATTGTATGAGTTCTGCCTGGACCAAGGTTATGCAGACCGCAATCTAATTGCTAAGTGGAAGAAGCCTGGTTATGAACGTCTCTGCTGTTTGAGGTGCATGCAGCCTCGGGATCACAACTTTGCCACCACATGCGTCTGCCGAGTGCCCAAGCATCTGAGAGAGGAGAAGGTTATAGAGTGCGTGCATTGTGGCTGCAGGGGCTGTGCCAGTGGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

145

Amino Acids

17.25

Weight (kDa)

8.86

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BUD31 PF01125 1 - 143 2.3e-65 Pre-mRNA-splicing factor BUD31
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 159
AccII CGCG 1 cut(s) 69
AciI CCGC 1 cut(s) 256
AclWI GGATC 1 cut(s) 336
AcsI RAATTY 1 cut(s) 207
AgsI TTSAA 1 cut(s) 151
AjnI CCWGG 2 cut(s) 234, 283
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw26I GTCTC 1 cut(s) 302
AlwI GGATC 1 cut(s) 336
AlwNI CAGNNNCTG 1 cut(s) 420
Ama87I CYCGRG 1 cut(s) 324
AoxI GGCC 1 cut(s) 140
ApeKI GCWGC 2 cut(s) 319, 411
ApoI RAATTY 1 cut(s) 207
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 1 cut(s) 238
AvaI CYCGRG 1 cut(s) 324
AvaII GGWCC 1 cut(s) 238
AxyI CCTNAGG 1 cut(s) 6
BaeGI GKGCMC 1 cut(s) 366
BbvI GCAGC 2 cut(s) 331, 398
BccI CCATC 2 cut(s) 107, 201
BceAI ACGGC 1 cut(s) 156
BciT130I CCWGG 2 cut(s) 236, 285
BcoDI GTCTC 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 412
BisI GCNGC 2 cut(s) 320, 412
BlsI GCNGC 2 cut(s) 321, 413
Bme1390I CCNGG 2 cut(s) 236, 285
Bme18I GGWCC 1 cut(s) 238
BmeT110I CYCGRG 1 cut(s) 324
BmgT120I GGNCC 1 cut(s) 238
BmrFI CCNGG 2 cut(s) 236, 285
BmsI GCATC 2 cut(s) 169, 379
BsaJI CCNNGG 3 cut(s) 213, 241, 323
Bse1I ACTGG 1 cut(s) 426
Bse21I CCTNAGG 1 cut(s) 6
BseBI CCWGG 2 cut(s) 236, 285
BseDI CCNNGG 3 cut(s) 213, 241, 323
BseMII CTCAG 2 cut(s) 87, 365
BseNI ACTGG 1 cut(s) 426
BseRI GAGGAG 1 cut(s) 395
BseSI GKGCMC 1 cut(s) 366
BseXI GCAGC 2 cut(s) 331, 398
BseYI CCCAGC 1 cut(s) 42
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 1 cut(s) 142
BsiHKCI CYCGRG 1 cut(s) 324
BsmAI GTCTC 1 cut(s) 302
BsmBI CGTCTC 1 cut(s) 302
BsnI GGCC 1 cut(s) 142
BsoBI CYCGRG 1 cut(s) 324
Bsp1286I GDGCHC 1 cut(s) 366
Bsp143I GATC 2 cut(s) 51, 328
Bsp68I TCGCGA 1 cut(s) 69
BspACI CCGC 1 cut(s) 256
BspANI GGCC 1 cut(s) 142
BspCNI CTCAG 2 cut(s) 88, 366
BspFNI CGCG 1 cut(s) 69
BspHI TCATGA 1 cut(s) 109
BspMAI CTGCAG 1 cut(s) 416
BspPI GGATC 1 cut(s) 336
BsrI ACTGG 1 cut(s) 426
BssECI CCNNGG 3 cut(s) 213, 241, 323
BssMI GATC 2 cut(s) 51, 328
BssT1I CCWWGG 2 cut(s) 213, 241
Bst2UI CCWGG 2 cut(s) 236, 285
Bst6I CTCTTC 1 cut(s) 69
BstC8I GCNNGC 3 cut(s) 78, 317, 401
BstDEI CTNAG 4 cut(s) 6, 96, 270, 374
BstFNI CGCG 1 cut(s) 69
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 2 cut(s) 54, 331
BstMAI GTCTC 1 cut(s) 302
BstMBI GATC 2 cut(s) 51, 328
BstMWI GCNNNNNNNGC 1 cut(s) 417
BstNI CCWGG 2 cut(s) 236, 285
BstNSI RCATGY 2 cut(s) 319, 351
BstSCI CCNGG 2 cut(s) 234, 283
BstSFI CTRYAG 1 cut(s) 412
BstSLI GKGCMC 1 cut(s) 366
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 2 cut(s) 331, 398
BstXI CCANNNNNNTGG 1 cut(s) 42
Bsu36I CCTNAGG 1 cut(s) 6
BsuRI GGCC 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 433
BtuMI TCGCGA 1 cut(s) 69
Cac8I GCNNGC 3 cut(s) 78, 317, 401
CaiI CAGNNNCTG 1 cut(s) 420
CciI TCATGA 1 cut(s) 109
CfoI GCGC 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 238
CseI GACGC 1 cut(s) 340
CviAII CATG 3 cut(s) 110, 316, 348
CviJI RGCY 9 cut(s) 42, 58, 95, 142, 171, 283, 322, 411, 420
CviKI_1 RGCY 9 cut(s) 42, 58, 95, 142, 171, 283, 322, 411, 420
DdeI CTNAG 4 cut(s) 6, 96, 270, 374
DpnI GATC 2 cut(s) 53, 330
DpnII GATC 2 cut(s) 51, 328
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 2 cut(s) 213, 241
Eco47I GGWCC 1 cut(s) 238
Eco81I CCTNAGG 1 cut(s) 6
Eco88I CYCGRG 1 cut(s) 324
EcoRII CCWGG 2 cut(s) 234, 283
EcoT14I CCWWGG 2 cut(s) 213, 241
ErhI CCWWGG 2 cut(s) 213, 241
Esp3I CGTCTC 1 cut(s) 302
FaeI CATG 3 cut(s) 113, 319, 351
FaiI YATR 8 cut(s) 111, 139, 225, 249, 291, 317, 349, 392
FatI CATG 3 cut(s) 109, 315, 347
Fnu4HI GCNGC 2 cut(s) 320, 412
Fsp4HI GCNGC 2 cut(s) 320, 412
FspI TGCGCA 1 cut(s) 159
GlaI GCGC 1 cut(s) 159
GluI GCNGC 2 cut(s) 320, 412
GsaI CCCAGC 1 cut(s) 46
HaeIII GGCC 1 cut(s) 142
HgaI GACGC 1 cut(s) 340
HhaI GCGC 1 cut(s) 160
Hin1II CATG 3 cut(s) 113, 319, 351
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 1 cut(s) 24
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 2 cut(s) 198, 375
Hpy188III TCNNGA 3 cut(s) 68, 110, 326
Hpy8I GTNNAC 1 cut(s) 28
HpyAV CCTTC 2 cut(s) 32, 379
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 6 cut(s) 76, 251, 315, 319, 403, 414
HpyF10VI GCNNNNNNNGC 1 cut(s) 417
HpyF3I CTNAG 4 cut(s) 6, 96, 270, 374
HpySE526I ACGT 1 cut(s) 295
Hsp92II CATG 3 cut(s) 113, 319, 351
HspAI GCGC 1 cut(s) 158
Kzo9I GATC 2 cut(s) 51, 328
LpnPI CCDG 7 cut(s) 28, 48, 221, 248, 270, 297, 400
Lsp1109I GCAGC 2 cut(s) 331, 398
LweI GCATC 2 cut(s) 169, 379
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 1 cut(s) 173
MalI GATC 2 cut(s) 53, 330
MboI GATC 2 cut(s) 51, 328
MboII GAAGA 2 cut(s) 56, 289
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 4 cut(s) 153, 207, 218, 264
MlyI GAGTC 1 cut(s) 33
MnlI CCTC 4 cut(s) 114, 303, 333, 373
MspR9I CCNGG 2 cut(s) 236, 285
MvaI CCWGG 2 cut(s) 236, 285
MvnI CGCG 1 cut(s) 69
MwoI GCNNNNNNNGC 1 cut(s) 417
NdeII GATC 2 cut(s) 51, 328
NlaIII CATG 3 cut(s) 113, 319, 351
NmeAIII GCCGAG 1 cut(s) 383
NruI TCGCGA 1 cut(s) 69
NsbI TGCGCA 1 cut(s) 159
NspI RCATGY 2 cut(s) 319, 351
PaeI GCATGC 1 cut(s) 319
PagI TCATGA 1 cut(s) 109
PkrI GCNGC 2 cut(s) 321, 413
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
Psp6I CCWGG 2 cut(s) 234, 283
PspFI CCCAGC 1 cut(s) 42
PspGI CCWGG 2 cut(s) 234, 283
PspPI GGNCC 1 cut(s) 238
PstI CTGCAG 1 cut(s) 416
PstNI CAGNNNCTG 1 cut(s) 420
RruI TCGCGA 1 cut(s) 69
SatI GCNGC 2 cut(s) 320, 412
Sau3AI GATC 2 cut(s) 51, 328
Sau96I GGNCC 1 cut(s) 238
SchI GAGTC 1 cut(s) 33
ScrFI CCNGG 2 cut(s) 236, 285
SduI GDGCHC 1 cut(s) 366
SetI ASST 8 cut(s) 12, 97, 137, 189, 247, 298, 314, 390
SfaNI GCATC 2 cut(s) 169, 379
SfcI CTRYAG 1 cut(s) 412
SinI GGWCC 1 cut(s) 238
SphI GCATGC 1 cut(s) 319
Sse9I AATT 4 cut(s) 153, 207, 218, 264
SsiI CCGC 1 cut(s) 256
StyD4I CCNGG 2 cut(s) 234, 283
StyI CCWWGG 2 cut(s) 213, 241
TaiI ACGT 1 cut(s) 298
TaqI TCGA 2 cut(s) 22, 54
TasI AATT 4 cut(s) 153, 207, 218, 264
TscAI CASTG 1 cut(s) 433
TseI GCWGC 2 cut(s) 319, 411
TspDTI ATGAA 1 cut(s) 306
TspRI CASTG 1 cut(s) 433
VpaK11BI GGWCC 1 cut(s) 238
XapI RAATTY 1 cut(s) 207
XceI RCATGY 2 cut(s) 319, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.