RchiOBHm_Chr7g0209301

Zinc finger A20 and AN1 domain-containing stress-associated protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
26678069 .. 26678335
267 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18732

Sequence Viewer

Length: 267 bp
ATGAACATGTGTTCCAAGTGCCACAAAGACTCGATGAAACAAGTGCAGACTAAGCTTGCTGCATCATCCATTGGAAATTCTGTCAATGGAAAATCAAAGGAATCTATTGTTTCTGCTAATGTGGATGTTCGAGCTAATTCAGTGGACCCAAAAACTATTTTTATGAACTCCATCTTTTCTTGTAGGTCACAGCAGTATGATGTCTCTGACCCGCAACCATCCTCCTTTACTTTGGGGATATGCCAGAATAACGAGGAAGCGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

88

Amino Acids

9.59

Weight (kDa)

8.41

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 212
AcsI RAATTY 1 cut(s) 76
AflIII ACRYGT 1 cut(s) 6
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 2 cut(s) 55, 134
AluI AGCT 2 cut(s) 55, 134
Alw26I GTCTC 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 145
AvaII GGWCC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 46
BccI CCATC 2 cut(s) 179, 226
BcoDI GTCTC 1 cut(s) 208
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 147
BmsI GCATC 1 cut(s) 71
BseGI GGATG 3 cut(s) 65, 130, 218
BseXI GCAGC 1 cut(s) 46
BsgI GTGCAG 1 cut(s) 65
BsmAI GTCTC 1 cut(s) 208
BspACI CCGC 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 3 cut(s) 65, 130, 218
BstMAI GTCTC 1 cut(s) 208
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstNSI RCATGY 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 46
BtsCI GGATG 3 cut(s) 65, 130, 218
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 145
CviAII CATG 1 cut(s) 7
CviJI RGCY 2 cut(s) 55, 134
CviKI_1 RGCY 2 cut(s) 55, 134
DdeI CTNAG 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 145
FaeI CATG 1 cut(s) 10
FaiI YATR 4 cut(s) 8, 164, 198, 241
FatI CATG 1 cut(s) 6
FauI CCCGC 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 3 cut(s) 52, 137, 205
Fsp4HI GCNGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 60
Hin1II CATG 1 cut(s) 10
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 2 cut(s) 29, 101
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 1 cut(s) 208
Hpy8I GTNNAC 1 cut(s) 145
HpyCH4V TGCA 2 cut(s) 46, 62
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 1 cut(s) 10
LpnPI CCDG 1 cut(s) 257
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 186
MluCI AATT 2 cut(s) 76, 136
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 2 cut(s) 232, 247
MwoI GCNNNNNNNGC 1 cut(s) 52
NlaIII CATG 1 cut(s) 10
NlaIV GGNNCC 1 cut(s) 147
NmuCI GTSAC 1 cut(s) 186
NspI RCATGY 1 cut(s) 10
PciI ACATGT 1 cut(s) 6
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
PscI ACATGT 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 145
SatI GCNGC 1 cut(s) 60
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 1 cut(s) 23
SetI ASST 3 cut(s) 57, 136, 188
SfaNI GCATC 1 cut(s) 71
SgeI CNNG 9 cut(s) 19, 28, 43, 53, 68, 143, 192, 223, 256
SinI GGWCC 1 cut(s) 145
Sse9I AATT 2 cut(s) 76, 136
SsiI CCGC 1 cut(s) 212
TaqI TCGA 2 cut(s) 32, 130
TasI AATT 2 cut(s) 76, 136
TfiI GAWTC 1 cut(s) 101
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 1 cut(s) 186
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 186
TspDTI ATGAA 3 cut(s) 17, 50, 179
TspRI CASTG 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 145
XapI RAATTY 1 cut(s) 76
XceI RCATGY 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.