Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000730

Physical Location & Seq

Genomic Coordinates Reverse (-)

13182194 .. 13182763

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g21790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAACCTTCATGACGAGAGTAGTGGATGTCAAGCTCCCCCTGCAGGTCCTATCATATGCATAAAACATTGTGGTTTCTATGGAGCTGCTGCCACCATGAATATGTGTTCCAAGTGCTACAAGGACTCGGTGATGAAACAAGAGCAGCCTAAGCTTGCCGCATCATCCACTGGAATTGCTATCAATGGAAAACCAAAGGAACCTATTGTTTCTGCTGATGTACATGTAAACGTTCAAGCGGATCCAGCGGACCCAAAATCTAATTTTAAGAACTCCTTCTTTTCTTTTGCGTCGCAGTATGATGCCTCTGATCCGAGACCGTCCTCCTTTACTTTTGGGTCAGGCCAGAATAACGGTGAGGTGAAGCCGCCGGAGGGCAAGAAACGGTGCACTAGCTGCAACAAGCGGGTTGGTCTGACAGGGTTTAGCTGTCGTTGTGGTGACCTGTTTTGTGCGGTACATCGTTATCCGGAGAAACATGAATGTTCTTATGATTATCGTTCTACAGGTCGTGAGGTCTTGGCTAAAGCCAATCCTGCTGTCAAAGCTGAGAAGCTTGATAAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

190

Amino Acids

20.45

Weight (kDa)

8.72

Isoelectric Point (pI)

36.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	20 - 41	1.4e-09	A20-like zinc finger
zf-AN1	PF01428	130 - 166	1.1e-09	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51200 AT1G51200 AT1G51200 AT1G51200
fragaria_vesca	FvH4_3g43080 FvH4_5g21790 FvH4_6g23060 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820
malus_domestica	MD02G1314500.v1.1 MD03G1024100.v1.1 MD07G1007700.v1.1 MD11G1029000.v1.1 MD11G1029100.v1.1 MD12G1065100.v1.1 MD14G1065100.v1.1
prunus_persica	Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.7G068900_v2.0.a1 Prupe.7G068900_v2.0.a1
pyrus_communis	pycom02g26370 pycom03g02080 pycom07g00630 pycom12g05690 pycom14g05300
rosa_chinensis	RchiOBHm_Chr1g0314981 RchiOBHm_Chr3g0480911 RchiOBHm_Chr5g0077181 RchiOBHm_Chr7g0209301
rosa_laevigata	RLG00000003146 RLG00000023442 RLG00000030750 RLG00000036671
rosa_multiflora	Rmu_sc0001701.1_g000022 Rmu_sc0004844.1_g000003 Rmu_sc0005168.1_g000016 Rmu_sc0013573.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004900 Rroxscaffold_6G00400890
rosa_rugosa	Rorug01G0004100 Rorug03G0187500 Rorug03G0187600 Rorug03G0187600 Rorug03G0187700 Rorug05G0452400 Rorug05G0452500 Rorug05G0452600 Rorug05G0452600 Rorug05G0452700 Rorug07G0111300
rosa_samantha	Rh1AG014500 Rh1BG006300 Rh1CG012600 Rh3AG238900 Rh3BG273100 Rh3CG268600 Rh3DG264600 Rh5AG507400 Rh5BG529000 Rh5CG553500 Rh5DG540800 Rh7DG252000
rosa_wichuraiana	Rw1G000700 Rw3G021380 Rw5G046990 Rw7G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	35
AccIII	TCCGGA	1 cut(s)	469
AciI	CCGC	6 cut(s)	159, 239, 248, 368, 406, 455
AclI	AACGTT	1 cut(s)	231
AclWI	GGATC	3 cut(s)	236, 249, 305
AfaI	GTAC	2 cut(s)	222, 459
AfiI	CCNNNNNNNGG	2 cut(s)	44, 374
AflIII	ACRYGT	1 cut(s)	223
AgsI	TTSAA	1 cut(s)	236
AluBI	AGCT	7 cut(s)	35, 86, 154, 396, 429, 548, 556
AluI	AGCT	7 cut(s)	35, 86, 154, 396, 429, 548, 556
Alw21I	GWGCWC	1 cut(s)	392
Alw26I	GTCTC	1 cut(s)	310
Alw44I	GTGCAC	1 cut(s)	388
AlwI	GGATC	3 cut(s)	236, 249, 305
Aor13HI	TCCGGA	1 cut(s)	469
AoxI	GGCC	1 cut(s)	343
ApaLI	GTGCAC	1 cut(s)	388
ApeKI	GCWGC	4 cut(s)	86, 89, 145, 396
Asp700I	GAANNNNTTC	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	47, 250
AsuHPI	GGTGA	4 cut(s)	142, 368, 373, 452
AvaII	GGWCC	2 cut(s)	47, 250
BaeGI	GKGCMC	1 cut(s)	392
BamHI	GGATCC	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	392
BbvI	GCAGC	4 cut(s)	73, 76, 157, 383
BcoDI	GTCTC	1 cut(s)	310
BfaI	CTAG	1 cut(s)	393
BfmI	CTRYAG	2 cut(s)	42, 504
BfuAI	ACCTGC	1 cut(s)	35
BisI	GCNGC	6 cut(s)	87, 90, 146, 159, 368, 397
BlsI	GCNGC	6 cut(s)	88, 91, 147, 160, 369, 398
Bme18I	GGWCC	2 cut(s)	47, 250
BmgT120I	GGNCC	2 cut(s)	47, 250
BmiI	GGNNCC	3 cut(s)	201, 243, 252
BmsI	GCATC	2 cut(s)	170, 292
Bpu10I	CCTNAGC	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	310
BsaWI	WCCGGW	1 cut(s)	469
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 374
Bse1I	ACTGG	1 cut(s)	175
BseAI	TCCGGA	1 cut(s)	469
BseGI	GGATG	2 cut(s)	32, 164
BseLI	CCNNNNNNNGG	2 cut(s)	44, 374
BseMII	CTCAG	1 cut(s)	540
BseNI	ACTGG	1 cut(s)	175
BseSI	GKGCMC	1 cut(s)	392
BseXI	GCAGC	4 cut(s)	73, 76, 157, 383
BshFI	GGCC	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	392
BsiSI	CCGG	2 cut(s)	371, 470
BslI	CCNNNNNNNGG	2 cut(s)	44, 374
BsmAI	GTCTC	1 cut(s)	310
BsnI	GGCC	1 cut(s)	345
Bso31I	GGTCTC	1 cut(s)	310
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp13I	TCCGGA	1 cut(s)	469
Bsp1407I	TGTACA	1 cut(s)	220
Bsp143I	GATC	2 cut(s)	241, 310
BspACI	CCGC	6 cut(s)	159, 239, 248, 368, 406, 455
BspANI	GGCC	1 cut(s)	345
BspCNI	CTCAG	1 cut(s)	541
BspEI	TCCGGA	1 cut(s)	469
BspHI	TCATGA	1 cut(s)	10
BspLI	GGNNCC	3 cut(s)	201, 243, 252
BspMAI	CTGCAG	1 cut(s)	46
BspMI	ACCTGC	1 cut(s)	35
BspPI	GGATC	3 cut(s)	236, 249, 305
BspTNI	GGTCTC	1 cut(s)	310
BsrGI	TGTACA	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	175
BssMI	GATC	2 cut(s)	241, 310
Bst4CI	ACNGT	3 cut(s)	321, 356, 387
BstAPI	GCANNNNNTGC	1 cut(s)	396
BstAUI	TGTACA	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	2 cut(s)	150, 549
BstEII	GGTNACC	1 cut(s)	440
BstF5I	GGATG	2 cut(s)	32, 164
BstKTI	GATC	2 cut(s)	244, 313
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	2 cut(s)	241, 310
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 151, 245, 396, 536, 545
BstNSI	RCATGY	1 cut(s)	227
BstPI	GGTNACC	1 cut(s)	440
BstSFI	CTRYAG	2 cut(s)	42, 504
BstSLI	GKGCMC	1 cut(s)	392
BstV1I	GCAGC	4 cut(s)	73, 76, 157, 383
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BsuRI	GGCC	1 cut(s)	345
BtsCI	GGATG	2 cut(s)	32, 164
BtsIMutI	CAGTG	1 cut(s)	168
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	156
CciI	TCATGA	1 cut(s)	10
Cfr13I	GGNCC	2 cut(s)	47, 250
CseI	GACGC	1 cut(s)	279
Csp6I	GTAC	2 cut(s)	221, 458
CspCI	CAANNNNNGTGG	2 cut(s)	157, 192
CviAII	CATG	4 cut(s)	11, 97, 224, 479
CviQI	GTAC	2 cut(s)	221, 458
DdeI	CTNAG	2 cut(s)	150, 549
DpnI	GATC	2 cut(s)	243, 312
DpnII	GATC	2 cut(s)	241, 310
Eco31I	GGTCTC	1 cut(s)	310
Eco47I	GGWCC	2 cut(s)	47, 250
Eco91I	GGTNACC	1 cut(s)	440
EcoO109I	RGGNCCY	1 cut(s)	47
EcoO65I	GGTNACC	1 cut(s)	440
EcoT22I	ATGCAT	1 cut(s)	62
FaeI	CATG	4 cut(s)	14, 100, 227, 482
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FatI	CATG	4 cut(s)	10, 96, 223, 478
FauI	CCCGC	1 cut(s)	399
FauNDI	CATATG	1 cut(s)	56
Fnu4HI	GCNGC	6 cut(s)	87, 90, 146, 159, 368, 397
FokI	GGATG	2 cut(s)	39, 151
Fsp4HI	GCNGC	6 cut(s)	87, 90, 146, 159, 368, 397
FspBI	CTAG	1 cut(s)	393
GluI	GCNGC	6 cut(s)	87, 90, 146, 159, 368, 397
HaeIII	GGCC	1 cut(s)	345
HapII	CCGG	2 cut(s)	371, 470
HgaI	GACGC	1 cut(s)	279
Hin1II	CATG	4 cut(s)	14, 100, 227, 482
HindIII	AAGCTT	2 cut(s)	152, 554
HinfI	GANTC	1 cut(s)	125
HpaII	CCGG	2 cut(s)	371, 470
HphI	GGTGA	4 cut(s)	142, 368, 373, 452
Hpy166II	GTNNAC	2 cut(s)	229, 390
Hpy188I	TCNGA	4 cut(s)	310, 315, 417, 569
Hpy188III	TCNNGA	3 cut(s)	11, 470, 512
Hpy8I	GTNNAC	2 cut(s)	229, 390
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	2 cut(s)	17, 286
HpyCH4III	ACNGT	3 cut(s)	321, 356, 387
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	4 cut(s)	44, 60, 390, 399
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 151, 245, 396, 536, 545
HpyF3I	CTNAG	2 cut(s)	150, 549
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	4 cut(s)	14, 100, 227, 482
Kpn2I	TCCGGA	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	241, 310
LmnI	GCTCC	2 cut(s)	40, 83
Lsp1109I	GCAGC	4 cut(s)	73, 76, 157, 383
LweI	GCATC	2 cut(s)	170, 292
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	440
MalI	GATC	2 cut(s)	243, 312
MboI	GATC	2 cut(s)	241, 310
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	392
MluCI	AATT	2 cut(s)	174, 262
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	5 cut(s)	316, 334, 352, 367, 508
Mph1103I	ATGCAT	1 cut(s)	62
MroI	TCCGGA	1 cut(s)	469
MroXI	GAANNNNTTC	1 cut(s)	275
MseI	TTAA	1 cut(s)	267
MslI	CAYNNNNRTG	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	2 cut(s)	371, 470
MwoI	GCNNNNNNNGC	6 cut(s)	41, 151, 245, 396, 536, 545
NdeI	CATATG	1 cut(s)	56
NdeII	GATC	2 cut(s)	241, 310
NlaIII	CATG	4 cut(s)	14, 100, 227, 482
NlaIV	GGNNCC	3 cut(s)	201, 243, 252
NmuCI	GTSAC	1 cut(s)	440
NsiI	ATGCAT	1 cut(s)	62
NspI	RCATGY	1 cut(s)	227
PagI	TCATGA	1 cut(s)	10
PciI	ACATGT	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	275
PkrI	GCNGC	6 cut(s)	88, 91, 147, 160, 369, 398
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PpuMI	RGGWCCY	1 cut(s)	47
PscI	ACATGT	1 cut(s)	223
Psp1406I	AACGTT	1 cut(s)	231
Psp5II	RGGWCCY	1 cut(s)	47
PspEI	GGTNACC	1 cut(s)	440
PspN4I	GGNNCC	3 cut(s)	201, 243, 252
PspPI	GGNCC	2 cut(s)	47, 250
PspPPI	RGGWCCY	1 cut(s)	47
PstI	CTGCAG	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	2 cut(s)	222, 459
RsaNI	GTAC	2 cut(s)	221, 458
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	6 cut(s)	87, 90, 146, 159, 368, 397
Sau3AI	GATC	2 cut(s)	241, 310
Sau96I	GGNCC	2 cut(s)	47, 250
SbfI	CCTGCAGG	1 cut(s)	46
SchI	GAGTC	1 cut(s)	119
SdaI	CCTGCAGG	1 cut(s)	46
SduI	GDGCHC	1 cut(s)	392
SfaNI	GCATC	2 cut(s)	170, 292
SfcI	CTRYAG	2 cut(s)	42, 504
SinI	GGWCC	2 cut(s)	47, 250
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse8387I	CCTGCAGG	1 cut(s)	46
Sse9I	AATT	2 cut(s)	174, 262
SsiI	CCGC	6 cut(s)	159, 239, 248, 368, 406, 455
SspMI	CTAG	1 cut(s)	393
TaaI	ACNGT	3 cut(s)	321, 356, 387
TaiI	ACGT	1 cut(s)	234
TasI	AATT	2 cut(s)	174, 262
TatI	WGTACW	1 cut(s)	220
TauI	GCSGC	2 cut(s)	161, 370
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	1 cut(s)	440
TseI	GCWGC	4 cut(s)	86, 89, 145, 396
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	4 cut(s)	17, 113, 149, 495
TspRI	CASTG	1 cut(s)	175
VneI	GTGCAC	1 cut(s)	388
VpaK11BI	GGWCC	2 cut(s)	47, 250
XceI	RCATGY	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	1 cut(s)	393
Zsp2I	ATGCAT	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.