Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000730

Physical Location & Seq

Genomic Coordinates Forward (+)

35985226 .. 35987430

Gene Structure 2205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g43080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGACCACGAAGAGACTGGATGTCAAGCTGCTCCTGAAGGTCCTATATTGTGTGTAAACAGTTGTGGGTTCTTTGGAAGTGCGGCTACTATGAATATGTGTTCGAAGTGCCATAAGGACATGATGATGAAACAAGAGCAGGCTAAGCTTGCTGCATCATCCATCGGGAGTATTGTCAATGGAACATCAAGCAGCCACGGGAAGGAACCTGTTGCTGCTAATCCAGCGGACCCAAAAACTATCTTTATGAACTCAGCCGTTGCATTTAGGTCGGAATATGACTCTCCTTCCCCCTTCTCTTTTGGGCCCTCAGAGAGTGCTGTGGCAAAGCCTGACCCAGAATCATTTACTTTTGGGTCAGGGAAAAACGATGAGCCAAAGCCGGAGGGCCCGAAGCGCTGCACTACCTGCAACAAGCGGGTGGGTTTAACAGGATTCAATTGTCGCTGTGGTGACCTTTTCTGTGCAGTACATCGTTATTCGGACAAACATGACTGCCCCTATGATTATCGTACTGCTGGTCGTGATGCCATTGCGAAAGCCAATCCTGTTGTCAAAGCTGAGAAGCTTGACAAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

194

Amino Acids

20.67

Weight (kDa)

6.92

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	16 - 39	1.2e-11	A20-like zinc finger
zf-AN1	PF01428	134 - 170	5e-09	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51200 AT1G51200 AT1G51200 AT1G51200
fragaria_vesca	FvH4_3g43080 FvH4_5g21790 FvH4_6g23060 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820
malus_domestica	MD02G1314500.v1.1 MD03G1024100.v1.1 MD07G1007700.v1.1 MD11G1029000.v1.1 MD11G1029100.v1.1 MD12G1065100.v1.1 MD14G1065100.v1.1
prunus_persica	Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.7G068900_v2.0.a1 Prupe.7G068900_v2.0.a1
pyrus_communis	pycom02g26370 pycom03g02080 pycom07g00630 pycom12g05690 pycom14g05300
rosa_chinensis	RchiOBHm_Chr1g0314981 RchiOBHm_Chr3g0480911 RchiOBHm_Chr5g0077181 RchiOBHm_Chr7g0209301
rosa_laevigata	RLG00000003146 RLG00000023442 RLG00000030750 RLG00000036671
rosa_multiflora	Rmu_sc0001701.1_g000022 Rmu_sc0004844.1_g000003 Rmu_sc0005168.1_g000016 Rmu_sc0013573.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004900 Rroxscaffold_6G00400890
rosa_rugosa	Rorug01G0004100 Rorug03G0187500 Rorug03G0187600 Rorug03G0187600 Rorug03G0187700 Rorug05G0452400 Rorug05G0452500 Rorug05G0452600 Rorug05G0452600 Rorug05G0452700 Rorug07G0111300
rosa_samantha	Rh1AG014500 Rh1BG006300 Rh1CG012600 Rh3AG238900 Rh3BG273100 Rh3CG268600 Rh3DG264600 Rh5AG507400 Rh5BG529000 Rh5CG553500 Rh5DG540800 Rh7DG252000
rosa_wichuraiana	Rw1G000700 Rw3G021380 Rw5G046990 Rw7G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	416
AciI	CCGC	3 cut(s)	83, 227, 418
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	2 cut(s)	471, 514
AfeI	AGCGCT	1 cut(s)	398
AfiI	CCNNNNNNNGG	1 cut(s)	202
AgsI	TTSAA	1 cut(s)	439
AhdI	GACNNNNNGTC	1 cut(s)	21
AluBI	AGCT	4 cut(s)	29, 148, 560, 568
AluI	AGCT	4 cut(s)	29, 148, 560, 568
Alw26I	GTCTC	1 cut(s)	8
Aor51HI	AGCGCT	1 cut(s)	398
AoxI	GGCC	2 cut(s)	305, 388
ApaI	GGGCCC	2 cut(s)	309, 392
ApeKI	GCWGC	5 cut(s)	29, 152, 192, 215, 399
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	7 cut(s)	4, 41, 229, 305, 306, 388, 389
AsuHPI	GGTGA	1 cut(s)	464
AsuII	TTCGAA	1 cut(s)	104
AvaII	GGWCC	3 cut(s)	4, 41, 229
BaeGI	GKGCMC	2 cut(s)	309, 392
BanII	GRGCYC	2 cut(s)	309, 392
BarI	GAAGNNNNNNTAC	2 cut(s)	70, 102
BbvI	GCAGC	5 cut(s)	16, 139, 202, 204, 386
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	242
BcgI	CGANNNNNNTGC	2 cut(s)	252, 286
BcoDI	GTCTC	1 cut(s)	8
BfoI	RGCGCY	1 cut(s)	400
BfuAI	ACCTGC	1 cut(s)	416
BisI	GCNGC	6 cut(s)	30, 84, 153, 193, 216, 400
BlpI	GCTNAGC	1 cut(s)	144
BlsI	GCNGC	6 cut(s)	31, 85, 154, 194, 217, 401
Bme18I	GGWCC	3 cut(s)	4, 41, 229
BmeRI	GACNNNNNGTC	1 cut(s)	21
BmgT120I	GGNCC	7 cut(s)	4, 41, 229, 305, 306, 388, 389
BmiI	GGNNCC	4 cut(s)	207, 231, 307, 390
BmsI	GCATC	2 cut(s)	164, 517
Bpu1102I	GCTNAGC	1 cut(s)	144
Bpu14I	TTCGAA	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	22
Bse3DI	GCAATG	1 cut(s)	531
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	2 cut(s)	26, 158
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	3 cut(s)	267, 324, 552
BseNI	ACTGG	1 cut(s)	22
BseSI	GKGCMC	2 cut(s)	309, 392
BseXI	GCAGC	5 cut(s)	16, 139, 202, 204, 386
BsgI	GTGCAG	2 cut(s)	385, 486
BshFI	GGCC	2 cut(s)	307, 390
BsiSI	CCGG	1 cut(s)	383
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmAI	GTCTC	1 cut(s)	8
BsnI	GGCC	2 cut(s)	307, 390
Bsp119I	TTCGAA	1 cut(s)	104
Bsp120I	GGGCCC	2 cut(s)	305, 388
Bsp1286I	GDGCHC	2 cut(s)	309, 392
Bsp1720I	GCTNAGC	1 cut(s)	144
BspACI	CCGC	3 cut(s)	83, 227, 418
BspANI	GGCC	2 cut(s)	307, 390
BspCNI	CTCAG	3 cut(s)	266, 323, 553
BspLI	GGNNCC	4 cut(s)	207, 231, 307, 390
BspMI	ACCTGC	1 cut(s)	416
BspT104I	TTCGAA	1 cut(s)	104
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	196
Bst4CI	ACNGT	1 cut(s)	62
Bst6I	CTCTTC	1 cut(s)	6
BstAPI	GCANNNNNTGC	1 cut(s)	408
BstBI	TTCGAA	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	141, 150
BstDEI	CTNAG	4 cut(s)	144, 253, 310, 561
BstDSI	CCRYGG	1 cut(s)	196
BstEII	GGTNACC	1 cut(s)	452
BstF5I	GGATG	2 cut(s)	26, 158
BstH2I	RGCGCY	1 cut(s)	400
BstHHI	GCGC	1 cut(s)	399
BstMAI	GTCTC	1 cut(s)	8
BstMWI	GCNNNNNNNGC	5 cut(s)	145, 149, 224, 396, 408
BstPI	GGTNACC	1 cut(s)	452
BstSLI	GKGCMC	2 cut(s)	309, 392
BstV1I	GCAGC	5 cut(s)	16, 139, 202, 204, 386
BsuRI	GGCC	2 cut(s)	307, 390
BtgI	CCRYGG	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	26, 158
BveI	ACCTGC	1 cut(s)	416
Cac8I	GCNNGC	2 cut(s)	141, 150
CfoI	GCGC	1 cut(s)	399
Cfr13I	GGNCC	7 cut(s)	4, 41, 229, 305, 306, 388, 389
Csp6I	GTAC	2 cut(s)	470, 513
CviAII	CATG	2 cut(s)	121, 491
CviQI	GTAC	2 cut(s)	470, 513
DdeI	CTNAG	4 cut(s)	144, 253, 310, 561
DriI	GACNNNNNGTC	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	6
Eam1105I	GACNNNNNGTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	6
Eco24I	GRGCYC	2 cut(s)	309, 392
Eco47I	GGWCC	3 cut(s)	4, 41, 229
Eco47III	AGCGCT	1 cut(s)	398
Eco57I	CTGAAG	1 cut(s)	57
Eco91I	GGTNACC	1 cut(s)	452
EcoO109I	RGGNCCY	3 cut(s)	41, 306, 388
EcoO65I	GGTNACC	1 cut(s)	452
EcoT38I	GRGCYC	2 cut(s)	309, 392
FaeI	CATG	2 cut(s)	124, 494
FaiI	YATR	9 cut(s)	47, 92, 98, 114, 122, 248, 279, 492, 504
FatI	CATG	2 cut(s)	120, 490
FauI	CCCGC	1 cut(s)	411
Fnu4HI	GCNGC	6 cut(s)	30, 84, 153, 193, 216, 400
FokI	GGATG	2 cut(s)	33, 145
FriOI	GRGCYC	2 cut(s)	309, 392
Fsp4HI	GCNGC	6 cut(s)	30, 84, 153, 193, 216, 400
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	6 cut(s)	30, 84, 153, 193, 216, 400
HaeII	RGCGCY	1 cut(s)	400
HaeIII	GGCC	2 cut(s)	307, 390
HapII	CCGG	1 cut(s)	383
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	2 cut(s)	124, 494
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HindIII	AAGCTT	2 cut(s)	146, 566
HinfI	GANTC	3 cut(s)	281, 341, 435
HpaII	CCGG	1 cut(s)	383
HphI	GGTGA	1 cut(s)	464
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	3 cut(s)	274, 313, 484
Hpy188III	TCNNGA	3 cut(s)	35, 166, 524
Hpy8I	GTNNAC	1 cut(s)	58
HpyAV	CCTTC	4 cut(s)	32, 196, 297, 304
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4V	TGCA	5 cut(s)	155, 263, 402, 411, 467
HpyF10VI	GCNNNNNNNGC	5 cut(s)	145, 149, 224, 396, 408
HpyF3I	CTNAG	4 cut(s)	144, 253, 310, 561
Hsp92II	CATG	2 cut(s)	124, 494
HspAI	GCGC	1 cut(s)	397
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	5 cut(s)	16, 139, 202, 204, 386
LweI	GCATC	2 cut(s)	164, 517
MaeIII	GTNAC	1 cut(s)	452
MboII	GAAGA	1 cut(s)	23
MfeI	CAATTG	1 cut(s)	439
MhlI	GDGCHC	2 cut(s)	309, 392
MluCI	AATT	1 cut(s)	439
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	2 cut(s)	319, 379
MseI	TTAA	1 cut(s)	428
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	1 cut(s)	383
MunI	CAATTG	1 cut(s)	439
MwoI	GCNNNNNNNGC	5 cut(s)	145, 149, 224, 396, 408
NlaIII	CATG	2 cut(s)	124, 494
NlaIV	GGNNCC	4 cut(s)	207, 231, 307, 390
NmuCI	GTSAC	1 cut(s)	452
NspV	TTCGAA	1 cut(s)	104
PfeI	GAWTC	2 cut(s)	341, 435
PkrI	GCNGC	6 cut(s)	31, 85, 154, 194, 217, 401
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
PpuMI	RGGWCCY	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	41
PspEI	GGTNACC	1 cut(s)	452
PspN4I	GGNNCC	4 cut(s)	207, 231, 307, 390
PspOMI	GGGCCC	2 cut(s)	305, 388
PspPI	GGNCC	7 cut(s)	4, 41, 229, 305, 306, 388, 389
PspPPI	RGGWCCY	1 cut(s)	41
RsaI	GTAC	2 cut(s)	471, 514
RsaNI	GTAC	2 cut(s)	470, 513
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	6 cut(s)	30, 84, 153, 193, 216, 400
Sau96I	GGNCC	7 cut(s)	4, 41, 229, 305, 306, 388, 389
SchI	GAGTC	1 cut(s)	275
SduI	GDGCHC	2 cut(s)	309, 392
SetI	ASST	9 cut(s)	31, 43, 150, 211, 272, 410, 459, 562, 570
SfaNI	GCATC	2 cut(s)	164, 517
SfuI	TTCGAA	1 cut(s)	104
SinI	GGWCC	3 cut(s)	4, 41, 229
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	439
SsiI	CCGC	3 cut(s)	83, 227, 418
TaaI	ACNGT	1 cut(s)	62
TaqI	TCGA	1 cut(s)	104
TasI	AATT	1 cut(s)	439
TatI	WGTACW	1 cut(s)	469
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	2 cut(s)	341, 435
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	5 cut(s)	29, 152, 192, 215, 399
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	3 cut(s)	107, 143, 263
VpaK11BI	GGWCC	3 cut(s)	4, 41, 229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.