Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000730

Physical Location & Seq

Genomic Coordinates Reverse (-)

6661840 .. 6664001

Gene Structure 2162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00004900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGACCACGAGGACACTGGATGTCAAGCTGCCCCTGAAGGTCCTATATTGTGTGTAAACAATTGTGGGTTCTTTGGAAGTGCAGCTACTATGAATATGTGTTCCAAGTGCCATAAGGACTTGATGATGAAACAGGAGCAGGCTAAGCTTGCTGCATCATCAATTGGAAGTATTGTCAATGGAACCTCAAGCAGCCACGGGAAGGAACCTGTTGCTGCTAATCCAGTGGACCCAAAAACTATCTCTATGAACTCGACCATTACATTTAGGTCAGAGTACGACTCTCCTTCCCCCTTTGCTTTTGGGTCATCGGAGACTGCTGTGGCAAAGCCTGGCCCAGAATCATTTACTTTTGGATCAGGGCAAAATGGTGAGCCGAAGCCAGAGGGCCCAAAGCGCTGCACTACCTGCAACAAGCGGGTAGGTTTAACAGGATTCAATTGTCGCTGTGGTGACCTTTTCTGTGCAGTACATCGTTATTCAGACAAACATGACTGCCCCTATGATTATCGTACTGCTGGTCGCGATGCCATTGCTAAAGCCAATCCTGTTGTCAAAGCTGAGAAGCTTGATAAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

193

Amino Acids

20.58

Weight (kDa)

7.5

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	16 - 39	1.8e-12	A20-like zinc finger
zf-AN1	PF01428	134 - 170	5e-09	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51200 AT1G51200 AT1G51200 AT1G51200
fragaria_vesca	FvH4_3g43080 FvH4_5g21790 FvH4_6g23060 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820
malus_domestica	MD02G1314500.v1.1 MD03G1024100.v1.1 MD07G1007700.v1.1 MD11G1029000.v1.1 MD11G1029100.v1.1 MD12G1065100.v1.1 MD14G1065100.v1.1
prunus_persica	Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.7G068900_v2.0.a1 Prupe.7G068900_v2.0.a1
pyrus_communis	pycom02g26370 pycom03g02080 pycom07g00630 pycom12g05690 pycom14g05300
rosa_chinensis	RchiOBHm_Chr1g0314981 RchiOBHm_Chr3g0480911 RchiOBHm_Chr5g0077181 RchiOBHm_Chr7g0209301
rosa_laevigata	RLG00000003146 RLG00000023442 RLG00000030750 RLG00000036671
rosa_multiflora	Rmu_sc0001701.1_g000022 Rmu_sc0004844.1_g000003 Rmu_sc0005168.1_g000016 Rmu_sc0013573.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004900 Rroxscaffold_6G00400890
rosa_rugosa	Rorug01G0004100 Rorug03G0187500 Rorug03G0187600 Rorug03G0187600 Rorug03G0187700 Rorug05G0452400 Rorug05G0452500 Rorug05G0452600 Rorug05G0452600 Rorug05G0452700 Rorug07G0111300
rosa_samantha	Rh1AG014500 Rh1BG006300 Rh1CG012600 Rh3AG238900 Rh3BG273100 Rh3CG268600 Rh3DG264600 Rh5AG507400 Rh5BG529000 Rh5CG553500 Rh5DG540800 Rh7DG252000
rosa_wichuraiana	Rw1G000700 Rw3G021380 Rw5G046990 Rw7G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	416
AccII	CGCG	1 cut(s)	525
AciI	CCGC	1 cut(s)	418
AclWI	GGATC	1 cut(s)	364
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	3 cut(s)	278, 471, 514
AfeI	AGCGCT	1 cut(s)	398
AfiI	CCNNNNNNNGG	1 cut(s)	202
AgsI	TTSAA	1 cut(s)	439
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	5 cut(s)	29, 86, 148, 560, 568
AluI	AGCT	5 cut(s)	29, 86, 148, 560, 568
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	1 cut(s)	364
Aor51HI	AGCGCT	1 cut(s)	398
AoxI	GGCC	2 cut(s)	334, 388
ApaI	GGGCCC	1 cut(s)	392
ApeKI	GCWGC	6 cut(s)	29, 83, 152, 192, 215, 399
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	6 cut(s)	4, 41, 229, 335, 388, 389
AsuHPI	GGTGA	2 cut(s)	383, 464
AvaII	GGWCC	3 cut(s)	4, 41, 229
BaeGI	GKGCMC	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	392
BarI	GAAGNNNNNNTAC	2 cut(s)	70, 102
BauI	CACGAG	1 cut(s)	8
BbvI	GCAGC	6 cut(s)	16, 95, 139, 202, 204, 386
BcgI	CGANNNNNNTGC	2 cut(s)	515, 549
BciT130I	CCWGG	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	308
BfoI	RGCGCY	1 cut(s)	400
BfuAI	ACCTGC	1 cut(s)	416
BisI	GCNGC	6 cut(s)	30, 84, 153, 193, 216, 400
BlpI	GCTNAGC	1 cut(s)	144
BlsI	GCNGC	6 cut(s)	31, 85, 154, 194, 217, 401
Bme1390I	CCNGG	1 cut(s)	333
Bme18I	GGWCC	3 cut(s)	4, 41, 229
BmgT120I	GGNCC	6 cut(s)	4, 41, 229, 335, 388, 389
BmiI	GGNNCC	4 cut(s)	184, 207, 231, 390
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	2 cut(s)	164, 517
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
Bpu1102I	GCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	172
BsaJI	CCNNGG	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse1I	ACTGG	2 cut(s)	22, 224
Bse3DI	GCAATG	1 cut(s)	531
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	1 cut(s)	26
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	2 cut(s)	22, 224
BseSI	GKGCMC	1 cut(s)	392
BseXI	GCAGC	6 cut(s)	16, 95, 139, 202, 204, 386
BsgI	GTGCAG	3 cut(s)	102, 385, 486
Bsh1236I	CGCG	1 cut(s)	525
BshFI	GGCC	2 cut(s)	336, 390
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmAI	GTCTC	1 cut(s)	308
BsnI	GGCC	2 cut(s)	336, 390
Bsp120I	GGGCCC	1 cut(s)	388
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp143I	GATC	1 cut(s)	356
Bsp1720I	GCTNAGC	1 cut(s)	144
Bsp68I	TCGCGA	1 cut(s)	525
BspACI	CCGC	1 cut(s)	418
BspANI	GGCC	2 cut(s)	336, 390
BspCNI	CTCAG	1 cut(s)	553
BspFNI	CGCG	1 cut(s)	525
BspLI	GGNNCC	4 cut(s)	184, 207, 231, 390
BspMI	ACCTGC	1 cut(s)	416
BspPI	GGATC	1 cut(s)	364
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	2 cut(s)	22, 224
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	1 cut(s)	356
BssSI	CACGAG	1 cut(s)	8
Bst2BI	CACGAG	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	333
BstAPI	GCANNNNNTGC	1 cut(s)	408
BstC8I	GCNNGC	2 cut(s)	141, 150
BstDEI	CTNAG	2 cut(s)	144, 561
BstDSI	CCRYGG	1 cut(s)	196
BstEII	GGTNACC	1 cut(s)	452
BstF5I	GGATG	1 cut(s)	26
BstFNI	CGCG	1 cut(s)	525
BstH2I	RGCGCY	1 cut(s)	400
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	1 cut(s)	359
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	1 cut(s)	356
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 149, 396, 408
BstNI	CCWGG	1 cut(s)	333
BstPI	GGTNACC	1 cut(s)	452
BstSCI	CCNGG	1 cut(s)	331
BstSLI	GKGCMC	1 cut(s)	392
BstUI	CGCG	1 cut(s)	525
BstV1I	GCAGC	6 cut(s)	16, 95, 139, 202, 204, 386
BsuRI	GGCC	2 cut(s)	336, 390
BtgI	CCRYGG	1 cut(s)	196
BtgZI	GCGATG	1 cut(s)	540
BtsCI	GGATG	1 cut(s)	26
BtsIMutI	CAGTG	2 cut(s)	15, 231
BtuMI	TCGCGA	1 cut(s)	525
BveI	ACCTGC	1 cut(s)	416
Cac8I	GCNNGC	2 cut(s)	141, 150
CfoI	GCGC	1 cut(s)	399
Cfr13I	GGNCC	6 cut(s)	4, 41, 229, 335, 388, 389
Csp6I	GTAC	3 cut(s)	277, 470, 513
CviAII	CATG	1 cut(s)	491
CviQI	GTAC	3 cut(s)	277, 470, 513
DdeI	CTNAG	2 cut(s)	144, 561
DpnI	GATC	1 cut(s)	358
DpnII	GATC	1 cut(s)	356
Eco24I	GRGCYC	1 cut(s)	392
Eco47I	GGWCC	3 cut(s)	4, 41, 229
Eco47III	AGCGCT	1 cut(s)	398
Eco57I	CTGAAG	1 cut(s)	57
Eco91I	GGTNACC	1 cut(s)	452
EcoO109I	RGGNCCY	2 cut(s)	41, 388
EcoO65I	GGTNACC	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	331
EcoT38I	GRGCYC	1 cut(s)	392
FaeI	CATG	1 cut(s)	494
FaiI	YATR	8 cut(s)	47, 92, 98, 114, 248, 492, 504, 580
FatI	CATG	1 cut(s)	490
FauI	CCCGC	1 cut(s)	411
Fnu4HI	GCNGC	6 cut(s)	30, 84, 153, 193, 216, 400
FokI	GGATG	1 cut(s)	33
FriOI	GRGCYC	1 cut(s)	392
Fsp4HI	GCNGC	6 cut(s)	30, 84, 153, 193, 216, 400
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	6 cut(s)	30, 84, 153, 193, 216, 400
HaeII	RGCGCY	1 cut(s)	400
HaeIII	GGCC	2 cut(s)	336, 390
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	1 cut(s)	494
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HindIII	AAGCTT	2 cut(s)	146, 566
HinfI	GANTC	3 cut(s)	281, 341, 435
HphI	GGTGA	2 cut(s)	383, 464
Hpy166II	GTNNAC	2 cut(s)	58, 229
Hpy188I	TCNGA	3 cut(s)	274, 313, 484
Hpy188III	TCNNGA	1 cut(s)	524
Hpy8I	GTNNAC	2 cut(s)	58, 229
HpyAV	CCTTC	3 cut(s)	32, 196, 297
HpyCH4V	TGCA	5 cut(s)	83, 155, 402, 411, 467
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 149, 396, 408
HpyF3I	CTNAG	2 cut(s)	144, 561
Hsp92II	CATG	1 cut(s)	494
HspAI	GCGC	1 cut(s)	397
Kzo9I	GATC	1 cut(s)	356
LmnI	GCTCC	1 cut(s)	136
Lsp1109I	GCAGC	6 cut(s)	16, 95, 139, 202, 204, 386
LweI	GCATC	2 cut(s)	164, 517
MaeIII	GTNAC	1 cut(s)	452
MalI	GATC	1 cut(s)	358
MboI	GATC	1 cut(s)	356
MfeI	CAATTG	3 cut(s)	61, 162, 439
MhlI	GDGCHC	1 cut(s)	392
MluCI	AATT	3 cut(s)	61, 162, 439
MlyI	GAGTC	1 cut(s)	275
MnlI	CCTC	3 cut(s)	4, 196, 379
MseI	TTAA	1 cut(s)	428
MspR9I	CCNGG	1 cut(s)	333
MunI	CAATTG	3 cut(s)	61, 162, 439
MvaI	CCWGG	1 cut(s)	333
MvnI	CGCG	1 cut(s)	525
MwoI	GCNNNNNNNGC	4 cut(s)	145, 149, 396, 408
NdeII	GATC	1 cut(s)	356
NlaIII	CATG	1 cut(s)	494
NlaIV	GGNNCC	4 cut(s)	184, 207, 231, 390
NmuCI	GTSAC	1 cut(s)	452
NruI	TCGCGA	1 cut(s)	525
PfeI	GAWTC	2 cut(s)	341, 435
PkrI	GCNGC	6 cut(s)	31, 85, 154, 194, 217, 401
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
PpuMI	RGGWCCY	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	41
Psp6I	CCWGG	1 cut(s)	331
PspEI	GGTNACC	1 cut(s)	452
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	4 cut(s)	184, 207, 231, 390
PspOMI	GGGCCC	1 cut(s)	388
PspPI	GGNCC	6 cut(s)	4, 41, 229, 335, 388, 389
PspPPI	RGGWCCY	1 cut(s)	41
RruI	TCGCGA	1 cut(s)	525
RsaI	GTAC	3 cut(s)	278, 471, 514
RsaNI	GTAC	3 cut(s)	277, 470, 513
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	6 cut(s)	30, 84, 153, 193, 216, 400
Sau3AI	GATC	1 cut(s)	356
Sau96I	GGNCC	6 cut(s)	4, 41, 229, 335, 388, 389
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	333
SduI	GDGCHC	1 cut(s)	392
SfaNI	GCATC	2 cut(s)	164, 517
SinI	GGWCC	3 cut(s)	4, 41, 229
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
Sse9I	AATT	3 cut(s)	61, 162, 439
SsiI	CCGC	1 cut(s)	418
StyD4I	CCNGG	1 cut(s)	331
TaqI	TCGA	1 cut(s)	254
TasI	AATT	3 cut(s)	61, 162, 439
TatI	WGTACW	1 cut(s)	469
TfiI	GAWTC	2 cut(s)	341, 435
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TscAI	CASTG	2 cut(s)	22, 231
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	6 cut(s)	29, 83, 152, 192, 215, 399
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	3 cut(s)	107, 143, 263
TspRI	CASTG	2 cut(s)	22, 231
VpaK11BI	GGWCC	3 cut(s)	4, 41, 229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.