Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000730

Physical Location & Seq

Genomic Coordinates Reverse (-)

2554400 .. 2555952

Gene Structure 1553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1029000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGAGCACGAGGAGACTGGATGTCAATCTGCCCCGGAAGGTCCTATTTTGTGCGTAAACAATTGTGGGTTTTTCGGAAGTGCGGCTACTATGAATATGTGCTCCAAGTGTCACAAGGACATGGTCTTGAAACAGGAGCAGGCGAAGCTTGCTGCATCATCCTTTGGAAGCATTGTCAACAGAACATCAAGCATCAACGCAAATGAGCCTGTTGCTTCTGTGGATGTTCAACCCCATCCAATGGAGCCAAAAACTCTCTCTTCGCAACCATCCTTTTCCTTTGGTTCAGGGTCATCTGGTGAGCCAAAGCCAGAGGGCCCAAAACGTTGCAACACTTGCAACAAGCGGGTTGGATTAACAGGGTTCAATTGTCGGTGTGGCCACCTCTTTTGTGCAGTACATCGTTATTCAGACAAACATGACTGCTCTTACGATTATCTCACTGCTGGACAGGATGCTATTGCGAAAGCCAACCCTGTCGTAAAAGCTGACAAGCTTGGTAAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

170

Amino Acids

18.08

Weight (kDa)

8.0

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	16 - 39	1.5e-12	A20-like zinc finger
zf-AN1	PF01428	110 - 146	1e-08	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51200 AT1G51200 AT1G51200 AT1G51200
fragaria_vesca	FvH4_3g43080 FvH4_5g21790 FvH4_6g23060 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820
malus_domestica	MD02G1314500.v1.1 MD03G1024100.v1.1 MD07G1007700.v1.1 MD11G1029000.v1.1 MD11G1029100.v1.1 MD12G1065100.v1.1 MD14G1065100.v1.1
prunus_persica	Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.7G068900_v2.0.a1 Prupe.7G068900_v2.0.a1
pyrus_communis	pycom02g26370 pycom03g02080 pycom07g00630 pycom12g05690 pycom14g05300
rosa_chinensis	RchiOBHm_Chr1g0314981 RchiOBHm_Chr3g0480911 RchiOBHm_Chr5g0077181 RchiOBHm_Chr7g0209301
rosa_laevigata	RLG00000003146 RLG00000023442 RLG00000030750 RLG00000036671
rosa_multiflora	Rmu_sc0001701.1_g000022 Rmu_sc0004844.1_g000003 Rmu_sc0005168.1_g000016 Rmu_sc0013573.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004900 Rroxscaffold_6G00400890
rosa_rugosa	Rorug01G0004100 Rorug03G0187500 Rorug03G0187600 Rorug03G0187600 Rorug03G0187700 Rorug05G0452400 Rorug05G0452500 Rorug05G0452600 Rorug05G0452600 Rorug05G0452700 Rorug07G0111300
rosa_samantha	Rh1AG014500 Rh1BG006300 Rh1CG012600 Rh3AG238900 Rh3BG273100 Rh3CG268600 Rh3DG264600 Rh5AG507400 Rh5BG529000 Rh5CG553500 Rh5DG540800 Rh7DG252000
rosa_wichuraiana	Rw1G000700 Rw3G021380 Rw5G046990 Rw7G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	241
AciI	CCGC	2 cut(s)	83, 346
AclI	AACGTT	1 cut(s)	325
AcoI	YGGCCR	1 cut(s)	379
AfaI	GTAC	1 cut(s)	399
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	3 cut(s)	130, 230, 367
AhdI	GACNNNNNGTC	1 cut(s)	21
AluBI	AGCT	3 cut(s)	148, 488, 496
AluI	AGCT	3 cut(s)	148, 488, 496
Alw21I	GWGCWC	2 cut(s)	9, 104
Alw26I	GTCTC	1 cut(s)	8
AoxI	GGCC	2 cut(s)	316, 379
ApaI	GGGCCC	1 cut(s)	320
ApeKI	GCWGC	1 cut(s)	152
AspS9I	GGNCC	3 cut(s)	41, 316, 317
AsuC2I	CCSGG	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	41
BaeGI	GKGCMC	1 cut(s)	320
BalI	TGGCCA	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	320
BarI	GAAGNNNNNNTAC	2 cut(s)	70, 102
BauI	CACGAG	1 cut(s)	8
Bbv12I	GWGCWC	2 cut(s)	9, 104
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	2 cut(s)	243, 277
BcnI	CCSGG	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	8
BisI	GCNGC	2 cut(s)	84, 153
BlsI	GCNGC	2 cut(s)	85, 154
Bme1390I	CCNGG	1 cut(s)	35
Bme18I	GGWCC	1 cut(s)	41
BmeRI	GACNNNNNGTC	1 cut(s)	21
BmgT120I	GGNCC	3 cut(s)	41, 316, 317
BmiI	GGNNCC	2 cut(s)	246, 318
BmrFI	CCNGG	1 cut(s)	35
BmsI	GCATC	3 cut(s)	164, 201, 445
BpuMI	CCSGG	1 cut(s)	35
BsaBI	GATNNNNATC	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	22
Bse8I	GATNNNNATC	1 cut(s)	25
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	6 cut(s)	26, 158, 229, 235, 269, 460
BseJI	GATNNNNATC	1 cut(s)	25
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseNI	ACTGG	1 cut(s)	22
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	139
BsgI	GTGCAG	1 cut(s)	414
BshFI	GGCC	2 cut(s)	318, 381
BsiHKAI	GWGCWC	2 cut(s)	9, 104
BsiSI	CCGG	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmAI	GTCTC	1 cut(s)	8
BsnI	GGCC	2 cut(s)	318, 381
Bsp120I	GGGCCC	1 cut(s)	316
Bsp1286I	GDGCHC	3 cut(s)	9, 104, 320
BspACI	CCGC	2 cut(s)	83, 346
BspANI	GGCC	2 cut(s)	318, 381
BspLI	GGNNCC	2 cut(s)	246, 318
BsrI	ACTGG	1 cut(s)	22
BssECI	CCNNGG	1 cut(s)	33
BssSI	CACGAG	1 cut(s)	8
Bst2BI	CACGAG	1 cut(s)	8
Bst6I	CTCTTC	1 cut(s)	265
BstAPI	GCANNNNNTGC	1 cut(s)	336
BstC8I	GCNNGC	2 cut(s)	141, 150
BstF5I	GGATG	6 cut(s)	26, 158, 229, 235, 269, 460
BstMAI	GTCTC	1 cut(s)	8
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 149, 336
BstSCI	CCNGG	1 cut(s)	33
BstSLI	GKGCMC	1 cut(s)	320
BstV1I	GCAGC	1 cut(s)	139
BsuRI	GGCC	2 cut(s)	318, 381
BtsCI	GGATG	6 cut(s)	26, 158, 229, 235, 269, 460
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	2 cut(s)	141, 150
Cfr13I	GGNCC	3 cut(s)	41, 316, 317
Csp6I	GTAC	1 cut(s)	398
CspCI	CAANNNNNGTGG	2 cut(s)	371, 406
CviAII	CATG	2 cut(s)	121, 419
CviQI	GTAC	1 cut(s)	398
DriI	GACNNNNNGTC	1 cut(s)	21
EaeI	YGGCCR	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	265
Eam1105I	GACNNNNNGTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	41
EcoO109I	RGGNCCY	2 cut(s)	41, 316
EcoT38I	GRGCYC	1 cut(s)	320
FaeI	CATG	2 cut(s)	124, 422
FaiI	YATR	4 cut(s)	92, 98, 122, 420
FatI	CATG	2 cut(s)	120, 418
FauI	CCCGC	1 cut(s)	339
Fnu4HI	GCNGC	2 cut(s)	84, 153
FokI	GGATG	6 cut(s)	33, 145, 222, 236, 256, 467
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	2 cut(s)	84, 153
GluI	GCNGC	2 cut(s)	84, 153
HaeIII	GGCC	2 cut(s)	318, 381
HapII	CCGG	1 cut(s)	35
Hin1II	CATG	2 cut(s)	124, 422
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	2 cut(s)	146, 494
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	58, 178
Hpy188I	TCNGA	2 cut(s)	77, 412
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	2 cut(s)	58, 178
HpyAV	CCTTC	1 cut(s)	32
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	4 cut(s)	155, 330, 339, 395
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 149, 336
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	2 cut(s)	124, 422
LmnI	GCTCC	4 cut(s)	4, 107, 136, 244
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	3 cut(s)	164, 201, 445
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	1 cut(s)	110
MboII	GAAGA	1 cut(s)	252
MfeI	CAATTG	2 cut(s)	61, 367
MhlI	GDGCHC	3 cut(s)	9, 104, 320
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	2 cut(s)	61, 367
MluNI	TGGCCA	1 cut(s)	381
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	3 cut(s)	4, 307, 395
Mox20I	TGGCCA	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	1 cut(s)	356
Msp20I	TGGCCA	1 cut(s)	381
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	35
MunI	CAATTG	2 cut(s)	61, 367
MwoI	GCNNNNNNNGC	3 cut(s)	145, 149, 336
NciI	CCSGG	1 cut(s)	35
NlaIII	CATG	2 cut(s)	124, 422
NlaIV	GGNNCC	2 cut(s)	246, 318
NmuCI	GTSAC	1 cut(s)	110
PflFI	GACNNNGTC	1 cut(s)	122
PflMI	CCANNNNNTGG	1 cut(s)	241
PkrI	GCNGC	2 cut(s)	85, 154
PpuMI	RGGWCCY	1 cut(s)	41
Psp1406I	AACGTT	1 cut(s)	325
Psp5II	RGGWCCY	1 cut(s)	41
PspN4I	GGNNCC	2 cut(s)	246, 318
PspOMI	GGGCCC	1 cut(s)	316
PspPI	GGNCC	3 cut(s)	41, 316, 317
PspPPI	RGGWCCY	1 cut(s)	41
PsyI	GACNNNGTC	1 cut(s)	122
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	2 cut(s)	84, 153
Sau96I	GGNCC	3 cut(s)	41, 316, 317
ScrFI	CCNGG	1 cut(s)	35
SduI	GDGCHC	3 cut(s)	9, 104, 320
SetI	ASST	6 cut(s)	43, 150, 328, 387, 490, 498
SfaNI	GCATC	3 cut(s)	164, 201, 445
SinI	GGWCC	1 cut(s)	41
Sse9I	AATT	2 cut(s)	61, 367
SsiI	CCGC	2 cut(s)	83, 346
StyD4I	CCNGG	1 cut(s)	33
TaiI	ACGT	1 cut(s)	328
TasI	AATT	2 cut(s)	61, 367
TatI	WGTACW	1 cut(s)	397
TauI	GCSGC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TscAI	CASTG	1 cut(s)	448
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	107
TspRI	CASTG	1 cut(s)	448
Tth111I	GACNNNGTC	1 cut(s)	122
Van91I	CCANNNNNTGG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.