Rw1G000700

Zinc finger A20 and AN1 domain-containing stress-associated protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
1023486 .. 1023996
511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G000700.1

Sequence Viewer

Length: 432 bp
ATGGAGCACAACAAGACAGGATGCCAAACACGTCCAGAAGCTCCCAAACTTTGTATCAATAACTGTGGATTCTTTGGAAGTGCAGCAACCATGAACTTGTGTTCCAAATGCCACAAGGACTTGGTATTGAAGCAAGAACAAGCCAAAGTTCCTGCAGTGTCCATTGAAAGTGCTGTGAATGCCAATCCCAATAACTGGGGAAATGAGCATGCTGTGACTTTAGATATACAAGCTGTACTCCGCCTCCAAACAATGAGGATATATAAGGTGAAAGCGACTCCAACCCGGTGCAACACTTGCAGGAAACGTGTTGGTCTCACTGGGTTCAATTGCCGCTGTGGACATATCTTCTGTGCAGTTCATCGCTACTCTGATAAACACGACTCAAAAGCCAACCCTGTTGTCAAGGCTGAAAAGCTGGATAAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

143

Amino Acids

15.9

Weight (kDa)

9.36

Isoelectric Point (pI)

30.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-A20 PF01754 17 - 39 1.5e-11 A20-like zinc finger
zf-AN1 PF01428 97 - 128 8e-07 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 195
AciI CCGC 2 cut(s) 241, 334
AfaI GTAC 1 cut(s) 237
AfiI CCNNNNNNNGG 1 cut(s) 195
AflIII ACRYGT 2 cut(s) 29, 307
AgsI TTSAA 3 cut(s) 130, 167, 328
AjiI CACGTC 1 cut(s) 32
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 3 cut(s) 41, 233, 418
AluI AGCT 3 cut(s) 41, 233, 418
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 1 cut(s) 320
ApeKI GCWGC 1 cut(s) 83
AsuC2I CCSGG 1 cut(s) 286
AsuHPI GGTGA 1 cut(s) 280
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 95
BcnI CCSGG 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 320
BfmI CTRYAG 1 cut(s) 153
BisI GCNGC 2 cut(s) 84, 334
BlsI GCNGC 2 cut(s) 85, 335
Bme1390I CCNGG 1 cut(s) 286
BmgBI CACGTC 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 286
BmrI ACTGGG 2 cut(s) 205, 330
BmsI GCATC 1 cut(s) 11
BmuI ACTGGG 2 cut(s) 205, 330
BpuMI CCSGG 1 cut(s) 286
BsaI GGTCTC 1 cut(s) 320
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse1I ACTGG 2 cut(s) 200, 325
BseGI GGATG 1 cut(s) 26
BseLI CCNNNNNNNGG 1 cut(s) 195
BseNI ACTGG 2 cut(s) 200, 325
BseXI GCAGC 1 cut(s) 95
BsgI GTGCAG 2 cut(s) 102, 375
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 1 cut(s) 286
BslI CCNNNNNNNGG 1 cut(s) 195
BsmAI GTCTC 1 cut(s) 320
BsmI GAATGC 1 cut(s) 184
Bso31I GGTCTC 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 9
BspACI CCGC 2 cut(s) 241, 334
BspMAI CTGCAG 1 cut(s) 157
BspTNI GGTCTC 1 cut(s) 320
BsrI ACTGG 2 cut(s) 200, 325
Bst4CI ACNGT 1 cut(s) 65
BstAPI GCANNNNNTGC 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 210
BstF5I GGATG 1 cut(s) 26
BstMAI GTCTC 1 cut(s) 320
BstMWI GCNNNNNNNGC 2 cut(s) 179, 297
BstNSI RCATGY 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 284
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 95
BtgZI GCGATG 1 cut(s) 347
BtrI CACGTC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 26
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 162, 318
Cac8I GCNNGC 1 cut(s) 210
Csp6I GTAC 1 cut(s) 236
CspCI CAANNNNNGTGG 2 cut(s) 46, 81
CviAII CATG 2 cut(s) 91, 209
CviJI RGCY 6 cut(s) 41, 143, 233, 392, 410, 418
CviKI_1 RGCY 6 cut(s) 41, 143, 233, 392, 410, 418
CviQI GTAC 1 cut(s) 236
EciI GGCGGA 1 cut(s) 230
Eco31I GGTCTC 1 cut(s) 320
FaeI CATG 2 cut(s) 94, 212
FaiI YATR 7 cut(s) 92, 210, 227, 262, 264, 345, 430
FatI CATG 2 cut(s) 90, 208
Fnu4HI GCNGC 2 cut(s) 84, 334
FokI GGATG 1 cut(s) 33
Fsp4HI GCNGC 2 cut(s) 84, 334
GluI GCNGC 2 cut(s) 84, 334
HapII CCGG 1 cut(s) 286
Hin1II CATG 2 cut(s) 94, 212
HinfI GANTC 3 cut(s) 69, 277, 383
HpaII CCGG 1 cut(s) 286
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 1 cut(s) 373
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 1 cut(s) 341
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4IV ACGT 2 cut(s) 31, 307
HpyCH4V TGCA 5 cut(s) 83, 155, 291, 300, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 297
HpySE526I ACGT 2 cut(s) 31, 307
Hsp92II CATG 2 cut(s) 94, 212
LmnI GCTCC 2 cut(s) 4, 46
LpnPI CCDG 9 cut(s) 3, 48, 165, 181, 286, 299, 306, 404, 411
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 1 cut(s) 11
MaeII ACGT 2 cut(s) 31, 307
MaeIII GTNAC 1 cut(s) 214
MboII GAAGA 1 cut(s) 340
MfeI CAATTG 1 cut(s) 328
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 1 cut(s) 328
MlyI GAGTC 2 cut(s) 271, 377
MmeI TCCRAC 1 cut(s) 305
MnlI CCTC 2 cut(s) 249, 254
MspA1I CMGCKG 1 cut(s) 336
MspI CCGG 1 cut(s) 286
MspR9I CCNGG 1 cut(s) 286
MunI CAATTG 1 cut(s) 328
Mva1269I GAATGC 1 cut(s) 184
MwoI GCNNNNNNNGC 2 cut(s) 179, 297
NciI CCSGG 1 cut(s) 286
NlaIII CATG 2 cut(s) 94, 212
NmuCI GTSAC 1 cut(s) 214
NspI RCATGY 1 cut(s) 212
PaeI GCATGC 1 cut(s) 212
PctI GAATGC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 69
PflMI CCANNNNNTGG 1 cut(s) 195
PkrI GCNGC 2 cut(s) 85, 335
PleI GAGTC 2 cut(s) 271, 377
PpsI GAGTC 2 cut(s) 271, 377
PstI CTGCAG 1 cut(s) 157
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
SatI GCNGC 2 cut(s) 84, 334
SchI GAGTC 2 cut(s) 271, 377
ScrFI CCNGG 1 cut(s) 286
SduI GDGCHC 1 cut(s) 9
SetI ASST 6 cut(s) 34, 43, 235, 270, 310, 420
SfaNI GCATC 1 cut(s) 11
SfcI CTRYAG 1 cut(s) 153
SphI GCATGC 1 cut(s) 212
Sse9I AATT 1 cut(s) 328
SsiI CCGC 2 cut(s) 241, 334
StyD4I CCNGG 1 cut(s) 284
TaaI ACNGT 1 cut(s) 65
TaiI ACGT 2 cut(s) 34, 310
TasI AATT 1 cut(s) 328
TatI WGTACW 1 cut(s) 235
TauI GCSGC 1 cut(s) 336
TfiI GAWTC 1 cut(s) 69
TscAI CASTG 2 cut(s) 162, 325
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 2 cut(s) 107, 350
TspRI CASTG 2 cut(s) 162, 325
Van91I CCANNNNNTGG 1 cut(s) 195
XceI RCATGY 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.