Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000730

Physical Location & Seq

Genomic Coordinates Reverse (-)

26171972 .. 26172406

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG252000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAAACAAGAACAGACTAAGCTTGCTGCATCATCCATTAGAAATACTGTCAATGGAAAATCAAAGGAATCTATTGTTTCTGCTAATGTGGATGTTCGAGCTAATTCAGTGGACCCAAAAACTATTTTTATGAACTCCATCTTTTCTTGTAGGTCGCAGCAGTATGATGTCTCTGACCCGCAACCATCCTCCTTTACTTTCGGGACATGCCAGAATAACGAGGAAGCGAAGCAGCCGGAGGGCCCGAAACAGTGCACTAGCTACAACAAGTGGGTTGGTTTGACAGGGTTTAACTGTCGTTGTGGTCACCTCTTTTGTACAGTACATCGTTATTCGGAGAAACATGATTGCTCTTATGATCATCGTACTGCTAGTCGTGAGGCCATTTCTAAAGCCAATCCTATTGTCAAAGCTGAGAAGCTTGATAAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

144

Amino Acids

16.13

Weight (kDa)

8.85

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-AN1	PF01428	90 - 121	2.9e-07	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51200 AT1G51200 AT1G51200 AT1G51200
fragaria_vesca	FvH4_3g43080 FvH4_5g21790 FvH4_6g23060 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820
malus_domestica	MD02G1314500.v1.1 MD03G1024100.v1.1 MD07G1007700.v1.1 MD11G1029000.v1.1 MD11G1029100.v1.1 MD12G1065100.v1.1 MD14G1065100.v1.1
prunus_persica	Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.7G068900_v2.0.a1 Prupe.7G068900_v2.0.a1
pyrus_communis	pycom02g26370 pycom03g02080 pycom07g00630 pycom12g05690 pycom14g05300
rosa_chinensis	RchiOBHm_Chr1g0314981 RchiOBHm_Chr3g0480911 RchiOBHm_Chr5g0077181 RchiOBHm_Chr7g0209301
rosa_laevigata	RLG00000003146 RLG00000023442 RLG00000030750 RLG00000036671
rosa_multiflora	Rmu_sc0001701.1_g000022 Rmu_sc0004844.1_g000003 Rmu_sc0005168.1_g000016 Rmu_sc0013573.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004900 Rroxscaffold_6G00400890
rosa_rugosa	Rorug01G0004100 Rorug03G0187500 Rorug03G0187600 Rorug03G0187600 Rorug03G0187700 Rorug05G0452400 Rorug05G0452500 Rorug05G0452600 Rorug05G0452600 Rorug05G0452700 Rorug07G0111300
rosa_samantha	Rh1AG014500 Rh1BG006300 Rh1CG012600 Rh3AG238900 Rh3BG273100 Rh3CG268600 Rh3DG264600 Rh5AG507400 Rh5BG529000 Rh5CG553500 Rh5DG540800 Rh7DG252000
rosa_wichuraiana	Rw1G000700 Rw3G021380 Rw5G046990 Rw7G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	179
AfaI	GTAC	3 cut(s)	319, 324, 367
AluBI	AGCT	5 cut(s)	22, 101, 261, 413, 421
AluI	AGCT	5 cut(s)	22, 101, 261, 413, 421
Alw21I	GWGCWC	1 cut(s)	257
Alw26I	GTCTC	1 cut(s)	175
Alw44I	GTGCAC	1 cut(s)	253
AoxI	GGCC	2 cut(s)	241, 381
ApaI	GGGCCC	1 cut(s)	245
ApaLI	GTGCAC	1 cut(s)	253
ApeKI	GCWGC	3 cut(s)	26, 157, 232
AspS9I	GGNCC	3 cut(s)	112, 241, 242
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	112
BaeGI	GKGCMC	2 cut(s)	245, 257
BanII	GRGCYC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	257
BbvI	GCAGC	3 cut(s)	13, 169, 244
BccI	CCATC	2 cut(s)	146, 193
BclI	TGATCA	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	2 cut(s)	258, 372
BisI	GCNGC	3 cut(s)	27, 158, 233
BlsI	GCNGC	3 cut(s)	28, 159, 234
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	3 cut(s)	112, 241, 242
BmiI	GGNNCC	2 cut(s)	114, 243
BmsI	GCATC	1 cut(s)	38
BseGI	GGATG	3 cut(s)	32, 97, 185
BseMII	CTCAG	1 cut(s)	405
BseSI	GKGCMC	2 cut(s)	245, 257
BseXI	GCAGC	3 cut(s)	13, 169, 244
BshFI	GGCC	2 cut(s)	243, 383
BsiHKAI	GWGCWC	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	236
BslFI	GGGAC	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	217
BsnI	GGCC	2 cut(s)	243, 383
Bsp120I	GGGCCC	1 cut(s)	241
Bsp1286I	GDGCHC	2 cut(s)	245, 257
Bsp1407I	TGTACA	1 cut(s)	317
Bsp143I	GATC	1 cut(s)	358
BspACI	CCGC	1 cut(s)	179
BspANI	GGCC	2 cut(s)	243, 383
BspCNI	CTCAG	1 cut(s)	406
BspLI	GGNNCC	2 cut(s)	114, 243
BsrGI	TGTACA	1 cut(s)	317
BssMI	GATC	1 cut(s)	358
Bst4CI	ACNGT	4 cut(s)	49, 252, 296, 322
BstAUI	TGTACA	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	2 cut(s)	18, 414
BstEII	GGTNACC	1 cut(s)	305
BstF5I	GGATG	3 cut(s)	32, 97, 185
BstKTI	GATC	1 cut(s)	361
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	358
BstNSI	RCATGY	1 cut(s)	210
BstPI	GGTNACC	1 cut(s)	305
BstSLI	GKGCMC	2 cut(s)	245, 257
BstV1I	GCAGC	3 cut(s)	13, 169, 244
BsuRI	GGCC	2 cut(s)	243, 383
BtsCI	GGATG	3 cut(s)	32, 97, 185
BtsIMutI	CAGTG	2 cut(s)	114, 257
Cac8I	GCNNGC	1 cut(s)	24
Cfr13I	GGNCC	3 cut(s)	112, 241, 242
Csp6I	GTAC	3 cut(s)	318, 323, 366
CviAII	CATG	2 cut(s)	207, 344
CviJI	RGCY	9 cut(s)	22, 101, 235, 243, 261, 383, 395, 413, 421
CviKI_1	RGCY	9 cut(s)	22, 101, 235, 243, 261, 383, 395, 413, 421
CviQI	GTAC	3 cut(s)	318, 323, 366
DdeI	CTNAG	2 cut(s)	18, 414
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	112
Eco91I	GGTNACC	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	305
EcoT38I	GRGCYC	1 cut(s)	245
FaeI	CATG	2 cut(s)	210, 347
FaiI	YATR	5 cut(s)	131, 165, 208, 345, 357
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	2 cut(s)	206, 343
FauI	CCCGC	1 cut(s)	186
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	3 cut(s)	27, 158, 233
FokI	GGATG	3 cut(s)	19, 104, 172
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	3 cut(s)	27, 158, 233
FspBI	CTAG	2 cut(s)	258, 372
GluI	GCNGC	3 cut(s)	27, 158, 233
HaeIII	GGCC	2 cut(s)	243, 383
HapII	CCGG	1 cut(s)	236
Hin1II	CATG	2 cut(s)	210, 347
HindIII	AAGCTT	2 cut(s)	20, 419
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	1 cut(s)	236
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	2 cut(s)	112, 255
Hpy188I	TCNGA	2 cut(s)	175, 337
Hpy188III	TCNNGA	2 cut(s)	202, 377
Hpy8I	GTNNAC	2 cut(s)	112, 255
HpyCH4III	ACNGT	4 cut(s)	49, 252, 296, 322
HpyCH4V	TGCA	2 cut(s)	29, 255
HpyF3I	CTNAG	2 cut(s)	18, 414
Hsp92II	CATG	2 cut(s)	210, 347
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	1 cut(s)	358
LpnPI	CCDG	3 cut(s)	224, 249, 270
Lsp1109I	GCAGC	3 cut(s)	13, 169, 244
LweI	GCATC	1 cut(s)	38
MaeI	CTAG	2 cut(s)	258, 372
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MhlI	GDGCHC	2 cut(s)	245, 257
MluCI	AATT	1 cut(s)	103
MnlI	CCTC	5 cut(s)	199, 214, 232, 320, 373
MseI	TTAA	1 cut(s)	291
MspI	CCGG	1 cut(s)	236
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	2 cut(s)	210, 347
NlaIV	GGNNCC	2 cut(s)	114, 243
NmuCI	GTSAC	1 cut(s)	305
NspI	RCATGY	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	3 cut(s)	28, 159, 234
PspEI	GGTNACC	1 cut(s)	305
PspN4I	GGNNCC	2 cut(s)	114, 243
PspOMI	GGGCCC	1 cut(s)	241
PspPI	GGNCC	3 cut(s)	112, 241, 242
RsaI	GTAC	3 cut(s)	319, 324, 367
RsaNI	GTAC	3 cut(s)	318, 323, 366
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	3 cut(s)	27, 158, 233
Sau3AI	GATC	1 cut(s)	358
Sau96I	GGNCC	3 cut(s)	112, 241, 242
SduI	GDGCHC	2 cut(s)	245, 257
SetI	ASST	7 cut(s)	24, 103, 155, 263, 312, 415, 423
SfaNI	GCATC	1 cut(s)	38
SinI	GGWCC	1 cut(s)	112
Sse9I	AATT	1 cut(s)	103
SsiI	CCGC	1 cut(s)	179
SspMI	CTAG	2 cut(s)	258, 372
TaaI	ACNGT	4 cut(s)	49, 252, 296, 322
TaqI	TCGA	1 cut(s)	97
TasI	AATT	1 cut(s)	103
TatI	WGTACW	2 cut(s)	317, 322
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	2 cut(s)	114, 257
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	3 cut(s)	26, 157, 232
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	2 cut(s)	17, 146
TspRI	CASTG	2 cut(s)	114, 257
VneI	GTGCAC	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	112
XceI	RCATGY	1 cut(s)	210
XspI	CTAG	2 cut(s)	258, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.