MD12G1065100.v1.1

Zinc finger A20 and AN1 domain-containing stress-associated protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
7636588 .. 7638897
2310 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1065100.v1.1.491

Sequence Viewer

Length: 441 bp
ATGAACATGTGTTCCAAGTGTTACAAGGACACGCTCTTAAAGCAGGAGCAAGCCAATTTGGCTGCATCATCCATTGACAGCATTGTGAATGGCGGCGGCAGCAGCAGCAGCAGCAACATCTTCATTGACCCAGTTGTTGCAAGTGTTGTCGATGTGCAAGCTGTACGAGTGGAGACAAGTGTTGTCTCAACAGAAGCATATATTGAATCATCCCCAAGCATGAAGATTGAGATGAAAGAAAATAAGGGACCAAGCAGATGCACTACTTGCCGAAAGCGCGTTGGTTTAACTGGCTTCAATTGCAAATGTGGAAACACCTTCTGTGCAAGTCATCGTTATTCTGATAAACATGACTGTCCTTTTGATTATAGGACTGCTGGTCAGGATGCTATTGCAAAAGCCAATCCTATCGTGAAGGCAGACAAACTTGACAAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

147

Amino Acids

15.78

Weight (kDa)

8.41

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-AN1 PF01428 87 - 123 3e-10 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 279
AciI CCGC 2 cut(s) 93, 96
AfaI GTAC 1 cut(s) 165
AflIII ACRYGT 1 cut(s) 6
AgsI TTSAA 2 cut(s) 206, 298
AhdI GACNNNNNGTC 1 cut(s) 378
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
Alw26I GTCTC 2 cut(s) 167, 190
ApeKI GCWGC 6 cut(s) 62, 99, 102, 105, 108, 111
ArsI GACNNNNNNTTYG 2 cut(s) 344, 376
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 1 cut(s) 248
AvaII GGWCC 1 cut(s) 248
BbvI GCAGC 6 cut(s) 49, 111, 114, 117, 120, 123
BcoDI GTCTC 2 cut(s) 167, 190
BfaI CTAG 1 cut(s) 439
BglI GCCNNNNNGGC 1 cut(s) 59
BisI GCNGC 8 cut(s) 63, 94, 97, 100, 103, 106, 109, 112
BlsI GCNGC 8 cut(s) 64, 95, 98, 101, 104, 107, 110, 113
Bme18I GGWCC 1 cut(s) 248
BmeRI GACNNNNNGTC 1 cut(s) 378
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 249
BmrI ACTGGG 1 cut(s) 125
BmsI GCATC 3 cut(s) 74, 248, 376
BmuI ACTGGG 1 cut(s) 125
Bse1I ACTGG 2 cut(s) 131, 295
BseGI GGATG 3 cut(s) 68, 209, 391
BseNI ACTGG 2 cut(s) 131, 295
BseXI GCAGC 6 cut(s) 49, 111, 114, 117, 120, 123
Bsh1236I CGCG 1 cut(s) 279
BslFI GGGAC 1 cut(s) 261
BsmAI GTCTC 2 cut(s) 167, 190
BsmFI GGGAC 1 cut(s) 261
BspACI CCGC 2 cut(s) 93, 96
BspFNI CGCG 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 249
BsrI ACTGG 2 cut(s) 131, 295
Bst4CI ACNGT 1 cut(s) 356
BstAPI GCANNNNNTGC 1 cut(s) 267
BstC8I GCNNGC 2 cut(s) 51, 159
BstF5I GGATG 3 cut(s) 68, 209, 391
BstFNI CGCG 1 cut(s) 279
BstHHI GCGC 1 cut(s) 279
BstMAI GTCTC 2 cut(s) 167, 190
BstNSI RCATGY 1 cut(s) 10
BstUI CGCG 1 cut(s) 279
BstV1I GCAGC 6 cut(s) 49, 111, 114, 117, 120, 123
BtsCI GGATG 3 cut(s) 68, 209, 391
Cac8I GCNNGC 2 cut(s) 51, 159
CfoI GCGC 1 cut(s) 279
Cfr13I GGNCC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 164
CviAII CATG 3 cut(s) 7, 220, 350
CviJI RGCY 5 cut(s) 53, 62, 161, 294, 401
CviKI_1 RGCY 5 cut(s) 53, 62, 161, 294, 401
CviQI GTAC 1 cut(s) 164
DriI GACNNNNNGTC 1 cut(s) 378
Eam1105I GACNNNNNGTC 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 248
FaeI CATG 3 cut(s) 10, 223, 353
FaiI YATR 6 cut(s) 8, 199, 201, 221, 351, 369
FaqI GGGAC 1 cut(s) 261
FatI CATG 3 cut(s) 6, 219, 349
Fnu4HI GCNGC 8 cut(s) 63, 94, 97, 100, 103, 106, 109, 112
FokI GGATG 3 cut(s) 55, 196, 398
Fsp4HI GCNGC 8 cut(s) 63, 94, 97, 100, 103, 106, 109, 112
FspBI CTAG 1 cut(s) 439
GlaI GCGC 1 cut(s) 278
GluI GCNGC 8 cut(s) 63, 94, 97, 100, 103, 106, 109, 112
HhaI GCGC 1 cut(s) 279
Hin1II CATG 3 cut(s) 10, 223, 353
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HinfI GANTC 1 cut(s) 206
Hpy188I TCNGA 1 cut(s) 343
Hpy188III TCNNGA 2 cut(s) 383, 412
HpyAV CCTTC 2 cut(s) 328, 409
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4V TGCA 7 cut(s) 65, 140, 157, 261, 303, 326, 395
Hsp92II CATG 3 cut(s) 10, 223, 353
HspAI GCGC 1 cut(s) 277
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 5 cut(s) 29, 144, 276, 363, 368
Lsp1109I GCAGC 6 cut(s) 49, 111, 114, 117, 120, 123
LweI GCATC 3 cut(s) 74, 248, 376
MaeI CTAG 1 cut(s) 439
MaeIII GTNAC 1 cut(s) 20
MboII GAAGA 2 cut(s) 112, 235
MfeI CAATTG 1 cut(s) 298
MluCI AATT 2 cut(s) 55, 298
MseI TTAA 2 cut(s) 38, 287
MunI CAATTG 1 cut(s) 298
MvnI CGCG 1 cut(s) 279
NlaIII CATG 3 cut(s) 10, 223, 353
NlaIV GGNNCC 1 cut(s) 249
NspI RCATGY 1 cut(s) 10
PciI ACATGT 1 cut(s) 6
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 8 cut(s) 64, 95, 98, 101, 104, 107, 110, 113
PscI ACATGT 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 1 cut(s) 248
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SaqAI TTAA 2 cut(s) 38, 287
SatI GCNGC 8 cut(s) 63, 94, 97, 100, 103, 106, 109, 112
Sau96I GGNCC 1 cut(s) 248
SetI ASST 2 cut(s) 163, 320
SfaNI GCATC 3 cut(s) 74, 248, 376
SinI GGWCC 1 cut(s) 248
Sse9I AATT 2 cut(s) 55, 298
SsiI CCGC 2 cut(s) 93, 96
SspMI CTAG 1 cut(s) 439
TaaI ACNGT 1 cut(s) 356
TaqI TCGA 1 cut(s) 150
TasI AATT 2 cut(s) 55, 298
TauI GCSGC 2 cut(s) 96, 99
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 2 cut(s) 38, 287
Tru9I TTAA 2 cut(s) 38, 287
TseI GCWGC 6 cut(s) 62, 99, 102, 105, 108, 111
TspDTI ATGAA 4 cut(s) 17, 112, 236, 248
VpaK11BI GGWCC 1 cut(s) 248
XceI RCATGY 1 cut(s) 10
XspI CTAG 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.