pycom12g05690

Zinc finger A20 and AN1 domain-containing stress-associated protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
5634604 .. 5635035
432 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g05690.1

Sequence Viewer

Length: 432 bp
ATGAACATGTGTTCCAAGTGTTACAAGGACACGCTCTTAAAGCAGGAGCAAGCCAATTTGGCTGCATCATCCATTGACAGCATTGTGAATGGCAGCAGCAGCAGCAACATCGTCATTGACCCAGTTGTTGCAAGTGCTGTTAATGTGCAAGCTGTACGAGTGGAGACAAGTGTTGTTTCAACAGAAGCATATATTGAATCATCCCCAAGCATGAAGACTGAGATGAAAGAAAATAAGGGACCAAGCAGATGCACTACTTGCCGAAAGCGCGTTGGTTTAACTGGCTTCAATTGCAAATGTGGAAACACCTTCTGTGCAAGTCATCGTTATTCTGATAAACATGACTGTCCTTTTGATTATAGGACTGCTGGTCAGGATGCTATTGCAAAAGCCAATCCTATCGTGAAGGCAGACAAACTTGACAAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

144

Amino Acids

15.49

Weight (kDa)

8.62

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-AN1 PF01428 84 - 120 2.9e-10 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 270
AfaI GTAC 1 cut(s) 156
AflIII ACRYGT 1 cut(s) 6
AgsI TTSAA 3 cut(s) 180, 197, 289
AhdI GACNNNNNGTC 1 cut(s) 369
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 158
ApeKI GCWGC 5 cut(s) 62, 93, 96, 99, 102
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
AspLEI GCGC 1 cut(s) 270
AspS9I GGNCC 1 cut(s) 239
AvaII GGWCC 1 cut(s) 239
BbsI GAAGAC 1 cut(s) 221
BbvI GCAGC 5 cut(s) 49, 105, 108, 111, 114
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 1 cut(s) 430
BglI GCCNNNNNGGC 1 cut(s) 59
BisI GCNGC 5 cut(s) 63, 94, 97, 100, 103
BlsI GCNGC 5 cut(s) 64, 95, 98, 101, 104
Bme18I GGWCC 1 cut(s) 239
BmeRI GACNNNNNGTC 1 cut(s) 369
BmgT120I GGNCC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 240
BmrI ACTGGG 1 cut(s) 116
BmsI GCATC 3 cut(s) 74, 239, 367
BmuI ACTGGG 1 cut(s) 116
BpiI GAAGAC 1 cut(s) 221
Bse1I ACTGG 2 cut(s) 122, 286
BseGI GGATG 3 cut(s) 68, 200, 382
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 2 cut(s) 122, 286
BseXI GCAGC 5 cut(s) 49, 105, 108, 111, 114
Bsh1236I CGCG 1 cut(s) 270
BslFI GGGAC 1 cut(s) 252
BsmAI GTCTC 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 252
BspCNI CTCAG 1 cut(s) 211
BspFNI CGCG 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 240
BsrI ACTGG 2 cut(s) 122, 286
Bst4CI ACNGT 1 cut(s) 347
BstAPI GCANNNNNTGC 1 cut(s) 258
BstC8I GCNNGC 2 cut(s) 51, 150
BstDEI CTNAG 1 cut(s) 219
BstF5I GGATG 3 cut(s) 68, 200, 382
BstFNI CGCG 1 cut(s) 270
BstHHI GCGC 1 cut(s) 270
BstMAI GTCTC 1 cut(s) 158
BstMWI GCNNNNNNNGC 7 cut(s) 40, 59, 99, 102, 258, 267, 291
BstNSI RCATGY 1 cut(s) 10
BstUI CGCG 1 cut(s) 270
BstV1I GCAGC 5 cut(s) 49, 105, 108, 111, 114
BstV2I GAAGAC 1 cut(s) 221
BtsCI GGATG 3 cut(s) 68, 200, 382
Cac8I GCNNGC 2 cut(s) 51, 150
CfoI GCGC 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 155
CviAII CATG 3 cut(s) 7, 211, 341
CviJI RGCY 5 cut(s) 53, 62, 152, 285, 392
CviKI_1 RGCY 5 cut(s) 53, 62, 152, 285, 392
CviQI GTAC 1 cut(s) 155
DdeI CTNAG 1 cut(s) 219
DriI GACNNNNNGTC 1 cut(s) 369
Eam1105I GACNNNNNGTC 1 cut(s) 369
Eco47I GGWCC 1 cut(s) 239
FaeI CATG 3 cut(s) 10, 214, 344
FaiI YATR 6 cut(s) 8, 190, 192, 212, 342, 360
FaqI GGGAC 1 cut(s) 252
FatI CATG 3 cut(s) 6, 210, 340
Fnu4HI GCNGC 5 cut(s) 63, 94, 97, 100, 103
FokI GGATG 3 cut(s) 55, 187, 389
Fsp4HI GCNGC 5 cut(s) 63, 94, 97, 100, 103
FspBI CTAG 1 cut(s) 430
GlaI GCGC 1 cut(s) 269
GluI GCNGC 5 cut(s) 63, 94, 97, 100, 103
HhaI GCGC 1 cut(s) 270
Hin1II CATG 3 cut(s) 10, 214, 344
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HinfI GANTC 1 cut(s) 197
Hpy188I TCNGA 1 cut(s) 334
Hpy188III TCNNGA 2 cut(s) 374, 403
HpyAV CCTTC 2 cut(s) 319, 400
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4V TGCA 7 cut(s) 65, 131, 148, 252, 294, 317, 386
HpyF10VI GCNNNNNNNGC 7 cut(s) 40, 59, 99, 102, 258, 267, 291
HpyF3I CTNAG 1 cut(s) 219
Hsp92II CATG 3 cut(s) 10, 214, 344
HspAI GCGC 1 cut(s) 268
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 5 cut(s) 29, 135, 267, 354, 359
Lsp1109I GCAGC 5 cut(s) 49, 105, 108, 111, 114
LweI GCATC 3 cut(s) 74, 239, 367
MaeI CTAG 1 cut(s) 430
MaeIII GTNAC 1 cut(s) 20
MboII GAAGA 1 cut(s) 226
MfeI CAATTG 1 cut(s) 289
MluCI AATT 2 cut(s) 55, 289
MseI TTAA 3 cut(s) 38, 141, 278
MunI CAATTG 1 cut(s) 289
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 7 cut(s) 40, 59, 99, 102, 258, 267, 291
NlaIII CATG 3 cut(s) 10, 214, 344
NlaIV GGNNCC 1 cut(s) 240
NspI RCATGY 1 cut(s) 10
PciI ACATGT 1 cut(s) 6
PfeI GAWTC 1 cut(s) 197
PkrI GCNGC 5 cut(s) 64, 95, 98, 101, 104
PscI ACATGT 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 240
PspPI GGNCC 1 cut(s) 239
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
SaqAI TTAA 3 cut(s) 38, 141, 278
SatI GCNGC 5 cut(s) 63, 94, 97, 100, 103
Sau96I GGNCC 1 cut(s) 239
SetI ASST 2 cut(s) 154, 311
SfaNI GCATC 3 cut(s) 74, 239, 367
SinI GGWCC 1 cut(s) 239
Sse9I AATT 2 cut(s) 55, 289
SspMI CTAG 1 cut(s) 430
TaaI ACNGT 1 cut(s) 347
TasI AATT 2 cut(s) 55, 289
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 3 cut(s) 38, 141, 278
Tru9I TTAA 3 cut(s) 38, 141, 278
TseI GCWGC 5 cut(s) 62, 93, 96, 99, 102
TspDTI ATGAA 3 cut(s) 17, 227, 239
VpaK11BI GGWCC 1 cut(s) 239
XceI RCATGY 1 cut(s) 10
XspI CTAG 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.