Rorug05G0452600

Zinc finger A20 and AN1 domain-containing stress-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000730
Physical Location & Seq
Reverse (-)
62570484 .. 62573526
3043 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0452600.1

Sequence Viewer

Length: 1338 bp
ATGACGGAAAGTAGCGTAAATGATCACTTGTTGATTGAAATCCGAAATGTGAATAAGCAGACTCCGCGTGGAAATAGAATTGGAGACGAATTATTGGCATCCCAGATTGGAGATAAGTTGAGACTGCTGCCTCCATTACCAGTTCCTAGTTACATATTTAACATCCCTACTGTTCTGCGAAGTCAGGTTGAAAATAAGGATTTCGGTGTTCCAGATTTGGTTTCAATTGGGCCATTTCACCATGGAAAAGAGATCCTGCAAGCCATGGAAGAAATCAAACTGCTGTATCTGCATTCTCTCCTTGATCGAAAGCCGACTCCACAGACCTCCTTGGAGAACTTTGTCAGAGAAATCCGGAGTATGGAGGGAGATTGTGGCGATTGCTATGATGGAAAGATCAATGCGAGTAGTGATGAGTTTGTGGAAATGATGGTGGTTGATACTTGCTTTATCATTGAGCTGTTTCGAAAGTTTTCAGGAGAGGTGCCCAAAGAGGAGAATGATCCTGTGTTCTGTAGGTCATGGATGCGCACGGCTCTTATAAATGACTTGCTTCTACTTTCGAACCAGCTTCCTTGGAAAGTTCTGAGCCGTTTATTTGAGCTTACGTGGGAAACAGGTAAACACCATCTTCATGACCTTATTTACAAGTACTTTAAGGGCTGCATATTTGGATTGTCTCCACAAGCCAATGGAGAACTTAAAAATAAACATGTACTAGACTTCTTAAGAAATTGCTTTCTTGGCTCATTTGAAACCAAAATGTCTGAGTTTAAGGACTTGAGTTCGAACTCGATTCCCTCTGCTGAAAAACTTTTAAATGCTGGAGTAAGGATTGCGGTTGGGCGTGGAAATAGCATGCTCAAGATAGATTTCCTCAATGGGGTTCTGAAAATTCCGCCCATACGAGTTCAGAAGTACGAAGTATCCTTCCTTAGAAACCTCATCACTTATGAACAGTGTGCACCGATTACAGGTGTAATCACCTCTTATGTTTCGTTGTTAGGTGACCTCATTAGGACAGAGAGAGATGTACAAATTCTCATGGATATCGGAATTATACATGGCATCTCAAGCAAGGAGGGTAGAGCCTCCTTGATCAATTGTCTGTGTGCTGACCTCGAAATATGCAGTTCCCCTTACACGAGACTCTATGAGAGTGTGAACAGATTTACTCAAGTTCCGTGGAACAAATGGAAGACAAAATTACGAGCTGATTATTTCAAGGATCCGAAGGATATTCTGAATCTTGGTTTCGGTGTCTTCATCGTGACACTTCTGACCTTTATTCAAACCATATATTCCATTATGTCTTACCAGAAACCGCAGTCACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

445

Amino Acids

50.77

Weight (kDa)

6.77

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 52 - 425 7.3e-93 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 542
Acc16I TGCGCA 1 cut(s) 530
AccB1I GGYRCC 1 cut(s) 484
AccII CGCG 1 cut(s) 67
AccIII TCCGGA 1 cut(s) 354
AciI CCGC 4 cut(s) 65, 839, 899, 1325
AclWI GGATC 4 cut(s) 247, 497, 1223, 1236
AcsI RAATTY 2 cut(s) 894, 1038
AfaI GTAC 4 cut(s) 653, 717, 920, 1035
AfiI CCNNNNNNNGG 3 cut(s) 361, 883, 974
AflII CTTAAG 1 cut(s) 727
AflIII ACRYGT 1 cut(s) 712
AgsI TTSAA 6 cut(s) 38, 191, 225, 755, 1225, 1292
AluBI AGCT 4 cut(s) 460, 571, 604, 1214
AluI AGCT 4 cut(s) 460, 571, 604, 1214
Alw21I GWGCWC 1 cut(s) 967
Alw26I GTCTC 4 cut(s) 78, 115, 684, 1141
Alw44I GTGCAC 1 cut(s) 963
AlwI GGATC 4 cut(s) 247, 497, 1223, 1236
Aor13HI TCCGGA 1 cut(s) 354
AoxI GGCC 1 cut(s) 230
ApaLI GTGCAC 1 cut(s) 963
ApeKI GCWGC 2 cut(s) 127, 663
ApoI RAATTY 2 cut(s) 894, 1038
Asp700I GAANNNNTTC 1 cut(s) 472
AspLEI GCGC 1 cut(s) 531
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 3 cut(s) 230, 976, 1019
AsuII TTCGAA 3 cut(s) 466, 563, 788
BaeGI GKGCMC 2 cut(s) 489, 967
BaeI ACNNNNGTAYC 2 cut(s) 269, 302
BamHI GGATCC 1 cut(s) 1228
BanI GGYRCC 1 cut(s) 484
BauI CACGAG 1 cut(s) 1144
BbsI GAAGAC 2 cut(s) 1205, 1255
Bbv12I GWGCWC 1 cut(s) 967
BbvI GCAGC 2 cut(s) 114, 650
BccI CCATC 3 cut(s) 383, 424, 636
BceAI ACGGC 2 cut(s) 549, 576
BciVI GTATCC 1 cut(s) 937
BclI TGATCA 2 cut(s) 22, 1098
BcoDI GTCTC 4 cut(s) 78, 115, 684, 1141
BfaI CTAG 2 cut(s) 147, 719
BfmI CTRYAG 1 cut(s) 514
BfrI CTTAAG 1 cut(s) 727
BfuI GTATCC 1 cut(s) 937
BisI GCNGC 2 cut(s) 128, 664
BlsI GCNGC 2 cut(s) 129, 665
BmcAI AGTACT 1 cut(s) 653
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 2 cut(s) 486, 1230
BmsI GCATC 3 cut(s) 107, 516, 1077
BpiI GAAGAC 2 cut(s) 1205, 1255
BpmI CTGGAG 1 cut(s) 846
Bpu14I TTCGAA 3 cut(s) 466, 563, 788
BpuEI CTTGAG 4 cut(s) 802, 848, 1057, 1161
BsaAI YACGTR 1 cut(s) 609
BsaBI GATNNNNATC 1 cut(s) 38
BsaJI CCNNGG 5 cut(s) 241, 264, 330, 575, 1184
BsaWI WCCGGW 1 cut(s) 354
Bsc4I CCNNNNNNNGG 3 cut(s) 361, 883, 974
Bse1I ACTGG 1 cut(s) 140
Bse8I GATNNNNATC 1 cut(s) 38
BseAI TCCGGA 1 cut(s) 354
BseDI CCNNGG 5 cut(s) 241, 264, 330, 575, 1184
BseGI GGATG 3 cut(s) 98, 162, 531
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 3 cut(s) 361, 883, 974
BseMII CTCAG 2 cut(s) 578, 759
BseNI ACTGG 1 cut(s) 140
BseRI GAGGAG 1 cut(s) 509
BseSI GKGCMC 2 cut(s) 489, 967
BseXI GCAGC 2 cut(s) 114, 650
Bsh1236I CGCG 1 cut(s) 67
BshFI GGCC 1 cut(s) 232
BshNI GGYRCC 1 cut(s) 484
BsiHKAI GWGCWC 1 cut(s) 967
BsiSI CCGG 1 cut(s) 355
BslI CCNNNNNNNGG 3 cut(s) 361, 883, 974
BsmAI GTCTC 4 cut(s) 78, 115, 684, 1141
BsmBI CGTCTC 1 cut(s) 78
BsmI GAATGC 1 cut(s) 292
BsnI GGCC 1 cut(s) 232
Bsp119I TTCGAA 3 cut(s) 466, 563, 788
Bsp1286I GDGCHC 2 cut(s) 489, 967
Bsp13I TCCGGA 1 cut(s) 354
Bsp1407I TGTACA 1 cut(s) 1033
Bsp143I GATC 7 cut(s) 22, 252, 304, 396, 502, 1098, 1228
Bsp19I CCATGG 2 cut(s) 241, 264
BspACI CCGC 4 cut(s) 65, 839, 899, 1325
BspANI GGCC 1 cut(s) 232
BspCNI CTCAG 2 cut(s) 579, 760
BspEI TCCGGA 1 cut(s) 354
BspFNI CGCG 1 cut(s) 67
BspHI TCATGA 1 cut(s) 634
BspLI GGNNCC 2 cut(s) 486, 1230
BspPI GGATC 4 cut(s) 247, 497, 1223, 1236
BspT104I TTCGAA 3 cut(s) 466, 563, 788
BspT107I GGYRCC 1 cut(s) 484
BspTI CTTAAG 1 cut(s) 727
BsrGI TGTACA 1 cut(s) 1033
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 5 cut(s) 241, 264, 330, 575, 1184
BssMI GATC 7 cut(s) 22, 252, 304, 396, 502, 1098, 1228
BssSI CACGAG 1 cut(s) 1144
BssT1I CCWWGG 4 cut(s) 241, 264, 330, 575
Bst2BI CACGAG 1 cut(s) 1144
Bst4CI ACNGT 2 cut(s) 172, 960
BstAFI CTTAAG 1 cut(s) 727
BstAUI TGTACA 1 cut(s) 1033
BstBAI YACGTR 1 cut(s) 609
BstBI TTCGAA 3 cut(s) 466, 563, 788
BstC8I GCNNGC 2 cut(s) 261, 860
BstDEI CTNAG 3 cut(s) 587, 768, 935
BstDSI CCRYGG 3 cut(s) 241, 264, 1184
BstEII GGTNACC 1 cut(s) 1007
BstF5I GGATG 3 cut(s) 98, 162, 531
BstFNI CGCG 1 cut(s) 67
BstHHI GCGC 1 cut(s) 531
BstKTI GATC 7 cut(s) 25, 255, 307, 399, 505, 1101, 1231
BstMAI GTCTC 4 cut(s) 78, 115, 684, 1141
BstMBI GATC 7 cut(s) 22, 252, 304, 396, 502, 1098, 1228
BstMWI GCNNNNNNNGC 4 cut(s) 64, 289, 744, 1074
BstNSI RCATGY 2 cut(s) 716, 862
BstPI GGTNACC 1 cut(s) 1007
BstSFI CTRYAG 1 cut(s) 514
BstSLI GKGCMC 2 cut(s) 489, 967
BstUI CGCG 1 cut(s) 67
BstV1I GCAGC 2 cut(s) 114, 650
BstV2I GAAGAC 2 cut(s) 1205, 1255
BstX2I RGATCY 2 cut(s) 252, 1228
BstYI RGATCY 2 cut(s) 252, 1228
BsuI GTATCC 1 cut(s) 937
BsuRI GGCC 1 cut(s) 232
BtgI CCRYGG 3 cut(s) 241, 264, 1184
BtsCI GGATG 3 cut(s) 98, 162, 531
BtsIMutI CAGTG 1 cut(s) 965
Cac8I GCNNGC 2 cut(s) 261, 860
CciI TCATGA 1 cut(s) 634
CfoI GCGC 1 cut(s) 531
Cfr13I GGNCC 1 cut(s) 230
Csp6I GTAC 4 cut(s) 652, 716, 919, 1034
CspCI CAANNNNNGTGG 2 cut(s) 1166, 1201
CviAII CATG 8 cut(s) 242, 265, 522, 635, 713, 859, 1045, 1064
CviQI GTAC 4 cut(s) 652, 716, 919, 1034
DdeI CTNAG 3 cut(s) 587, 768, 935
DpnI GATC 7 cut(s) 24, 254, 306, 398, 504, 1100, 1230
DpnII GATC 7 cut(s) 22, 252, 304, 396, 502, 1098, 1228
DraI TTTAAA 1 cut(s) 819
EciI GGCGGA 1 cut(s) 888
Eco130I CCWWGG 4 cut(s) 241, 264, 330, 575
Eco32I GATATC 1 cut(s) 1051
Eco91I GGTNACC 1 cut(s) 1007
EcoO65I GGTNACC 1 cut(s) 1007
EcoRV GATATC 1 cut(s) 1051
EcoT14I CCWWGG 4 cut(s) 241, 264, 330, 575
ErhI CCWWGG 4 cut(s) 241, 264, 330, 575
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 8 cut(s) 245, 268, 525, 638, 716, 862, 1048, 1067
FatI CATG 8 cut(s) 241, 264, 521, 634, 712, 858, 1044, 1063
FbaI TGATCA 2 cut(s) 22, 1098
Fnu4HI GCNGC 2 cut(s) 128, 664
FokI GGATG 3 cut(s) 85, 149, 538
Fsp4HI GCNGC 2 cut(s) 128, 664
FspAI RTGCGCAY 1 cut(s) 530
FspBI CTAG 2 cut(s) 147, 719
FspI TGCGCA 1 cut(s) 530
GlaI GCGC 1 cut(s) 530
GluI GCNGC 2 cut(s) 128, 664
GsuI CTGGAG 1 cut(s) 846
HaeIII GGCC 1 cut(s) 232
HapII CCGG 1 cut(s) 355
HhaI GCGC 1 cut(s) 531
Hin1II CATG 8 cut(s) 245, 268, 525, 638, 716, 862, 1048, 1067
Hin6I GCGC 1 cut(s) 529
HinP1I GCGC 1 cut(s) 529
HinfI GANTC 5 cut(s) 61, 316, 796, 1149, 1246
HpaII CCGG 1 cut(s) 355
HphI GGTGA 3 cut(s) 230, 976, 1019
Hpy166II GTNNAC 3 cut(s) 623, 965, 1165
Hpy188III TCNNGA 6 cut(s) 212, 355, 477, 635, 865, 1270
Hpy8I GTNNAC 3 cut(s) 623, 965, 1165
HpyAV CCTTC 2 cut(s) 940, 1228
HpyCH4III ACNGT 2 cut(s) 172, 960
HpyCH4IV ACGT 1 cut(s) 608
HpyCH4V TGCA 5 cut(s) 259, 292, 666, 965, 1131
HpyF10VI GCNNNNNNNGC 4 cut(s) 64, 289, 744, 1074
HpyF3I CTNAG 3 cut(s) 587, 768, 935
HpySE526I ACGT 1 cut(s) 608
Hsp92II CATG 8 cut(s) 245, 268, 525, 638, 716, 862, 1048, 1067
HspAI GCGC 1 cut(s) 529
Kpn2I TCCGGA 1 cut(s) 354
Ksp22I TGATCA 2 cut(s) 22, 1098
Kzo9I GATC 7 cut(s) 22, 252, 304, 396, 502, 1098, 1228
Lsp1109I GCAGC 2 cut(s) 114, 650
LweI GCATC 3 cut(s) 107, 516, 1077
MaeI CTAG 2 cut(s) 147, 719
MaeII ACGT 1 cut(s) 608
MaeIII GTNAC 4 cut(s) 149, 1007, 1270, 1329
MalI GATC 7 cut(s) 24, 254, 306, 398, 504, 1100, 1230
MboI GATC 7 cut(s) 22, 252, 304, 396, 502, 1098, 1228
MboII GAAGA 4 cut(s) 281, 623, 1210, 1255
MfeI CAATTG 2 cut(s) 225, 1102
MflI RGATCY 2 cut(s) 252, 1228
MhlI GDGCHC 2 cut(s) 489, 967
MluCI AATT 9 cut(s) 78, 89, 225, 733, 894, 1038, 1056, 1102, 1205
MlyI GAGTC 3 cut(s) 55, 310, 1143
MroI TCCGGA 1 cut(s) 354
MroXI GAANNNNTTC 1 cut(s) 472
MseI TTAA 6 cut(s) 159, 657, 702, 728, 774, 818
MslI CAYNNNNRTG 1 cut(s) 633
MspCI CTTAAG 1 cut(s) 727
MspI CCGG 1 cut(s) 355
MunI CAATTG 2 cut(s) 225, 1102
Mva1269I GAATGC 1 cut(s) 292
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 4 cut(s) 64, 289, 744, 1074
NcoI CCATGG 2 cut(s) 241, 264
NdeII GATC 7 cut(s) 22, 252, 304, 396, 502, 1098, 1228
NlaIII CATG 8 cut(s) 245, 268, 525, 638, 716, 862, 1048, 1067
NlaIV GGNNCC 2 cut(s) 486, 1230
NmuCI GTSAC 3 cut(s) 1007, 1270, 1329
NsbI TGCGCA 1 cut(s) 530
NspI RCATGY 2 cut(s) 716, 862
NspV TTCGAA 3 cut(s) 466, 563, 788
PaeI GCATGC 1 cut(s) 862
PagI TCATGA 1 cut(s) 634
PciI ACATGT 1 cut(s) 712
PctI GAATGC 1 cut(s) 292
PdmI GAANNNNTTC 1 cut(s) 472
PfeI GAWTC 2 cut(s) 796, 1246
PkrI GCNGC 2 cut(s) 129, 665
PleI GAGTC 3 cut(s) 55, 310, 1143
PpsI GAGTC 3 cut(s) 55, 310, 1143
Ppu21I YACGTR 1 cut(s) 609
PscI ACATGT 1 cut(s) 712
PsiI TTATAA 1 cut(s) 542
PspEI GGTNACC 1 cut(s) 1007
PspN4I GGNNCC 2 cut(s) 486, 1230
PspPI GGNCC 1 cut(s) 230
PsuI RGATCY 2 cut(s) 252, 1228
RsaI GTAC 4 cut(s) 653, 717, 920, 1035
RsaNI GTAC 4 cut(s) 652, 716, 919, 1034
RseI CAYNNNNRTG 1 cut(s) 633
SaqAI TTAA 6 cut(s) 159, 657, 702, 728, 774, 818
SatI GCNGC 2 cut(s) 128, 664
Sau3AI GATC 7 cut(s) 22, 252, 304, 396, 502, 1098, 1228
Sau96I GGNCC 1 cut(s) 230
ScaI AGTACT 1 cut(s) 653
SchI GAGTC 3 cut(s) 55, 310, 1143
SduI GDGCHC 2 cut(s) 489, 967
SfaNI GCATC 3 cut(s) 107, 516, 1077
SfcI CTRYAG 1 cut(s) 514
SfuI TTCGAA 3 cut(s) 466, 563, 788
SmiMI CAYNNNNRTG 1 cut(s) 633
SmlI CTYRAG 5 cut(s) 727, 781, 863, 1072, 1176
SmoI CTYRAG 5 cut(s) 727, 781, 863, 1072, 1176
SphI GCATGC 1 cut(s) 862
Sse9I AATT 9 cut(s) 78, 89, 225, 733, 894, 1038, 1056, 1102, 1205
SsiI CCGC 4 cut(s) 65, 839, 899, 1325
SspMI CTAG 2 cut(s) 147, 719
StyI CCWWGG 4 cut(s) 241, 264, 330, 575
TaaI ACNGT 2 cut(s) 172, 960
TaiI ACGT 1 cut(s) 611
TaqI TCGA 6 cut(s) 307, 466, 563, 788, 794, 1122
TasI AATT 9 cut(s) 78, 89, 225, 733, 894, 1038, 1056, 1102, 1205
TatI WGTACW 3 cut(s) 651, 715, 1033
TfiI GAWTC 2 cut(s) 796, 1246
Tru1I TTAA 6 cut(s) 159, 657, 702, 728, 774, 818
Tru9I TTAA 6 cut(s) 159, 657, 702, 728, 774, 818
TscAI CASTG 1 cut(s) 965
TseFI GTSAC 3 cut(s) 1007, 1270, 1329
TseI GCWGC 2 cut(s) 127, 663
Tsp45I GTSAC 3 cut(s) 1007, 1270, 1329
TspDTI ATGAA 3 cut(s) 623, 969, 1255
TspGWI ACGGA 2 cut(s) 20, 1173
TspRI CASTG 1 cut(s) 965
Vha464I CTTAAG 1 cut(s) 727
VneI GTGCAC 1 cut(s) 963
XapI RAATTY 2 cut(s) 894, 1038
XceI RCATGY 2 cut(s) 716, 862
XmnI GAANNNNTTC 1 cut(s) 472
XspI CTAG 2 cut(s) 147, 719
ZrmI AGTACT 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.