Rh3BG273100

Zinc finger A20 and AN1 domain-containing stress-associated protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Reverse (-)
26652330 .. 26656443
4114 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG273100.1

Sequence Viewer

Length: 573 bp
ATGAATGGTCATTATATTAAAAATTGCGTTATGATGTTGTTTTGCAGATTAACAAAGATGGACTCTCACGATGAAACTGGATGCCAAGCTCTAGACCGCCCCATCCTTTGCATTAATAACTGTGGCTTCTTCGGAAGGGCAGCTACAATGAATATGTGTTCCAAATGTTACAAGGACATGCTTCTAAAGCAGGAGCAGGCCGATCTGGCAGCAACATCCATTGGTAGCCTTGTGAATGGCAACAATAGTGGCATTGGCCCTGTTGTTGCTAATGCTGTCGATGTGCAAGCTGGACAAGTTGAGGCAGTGGTTATTTCAACAGAGCCATCTTGTGGCTCATCCTCAAGCAAAGTTACTGATGAGGTGAAAGAAATAGCGGGACCAAAGAGATGCACTACTTGCCGAAAGCGTGTTGGTCTAACTGGGTTCAATTGCAAATGTGGAAACACCTTCTGTTCAACTCATCGCTATTCTGACAAACATGACTGCCCTTTTGATTATAGGACTGCTGGTCGGGATGCTATTGCTAAAGCCAATCCTGTTGTCAAGGCAGAGAAACTTGATAAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

190

Amino Acids

20.55

Weight (kDa)

8.51

Isoelectric Point (pI)

26.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-A20 PF01754 35 - 58 7.7e-12 A20-like zinc finger
zf-AN1 PF01428 131 - 167 3.9e-10 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 332
AciI CCGC 2 cut(s) 97, 377
AfiI CCNNNNNNNGG 1 cut(s) 332
AgsI TTSAA 3 cut(s) 318, 430, 459
AhdI GACNNNNNGTC 1 cut(s) 510
AluBI AGCT 3 cut(s) 89, 143, 290
AluI AGCT 3 cut(s) 89, 143, 290
AoxI GGCC 2 cut(s) 198, 256
ApeKI GCWGC 2 cut(s) 140, 209
ArsI GACNNNNNNTTYG 2 cut(s) 476, 508
AseI ATTAAT 1 cut(s) 114
AspS9I GGNCC 2 cut(s) 257, 380
AsuHPI GGTGA 1 cut(s) 376
AvaII GGWCC 1 cut(s) 380
BarI GAAGNNNNNNTAC 2 cut(s) 127, 159
BbvI GCAGC 2 cut(s) 152, 221
BccI CCATC 3 cut(s) 52, 110, 334
BfaI CTAG 2 cut(s) 92, 571
BglI GCCNNNNNGGC 1 cut(s) 206
BisI GCNGC 2 cut(s) 141, 210
BlsI GCNGC 2 cut(s) 142, 211
Bme18I GGWCC 1 cut(s) 380
BmeRI GACNNNNNGTC 1 cut(s) 510
BmgT120I GGNCC 2 cut(s) 257, 380
BmiI GGNNCC 1 cut(s) 381
BmrI ACTGGG 1 cut(s) 432
BmsI GCATC 3 cut(s) 71, 380, 508
BmuI ACTGGG 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 328
Bsc4I CCNNNNNNNGG 1 cut(s) 332
Bse1I ACTGG 2 cut(s) 82, 427
BseGI GGATG 5 cut(s) 86, 102, 215, 338, 523
BseLI CCNNNNNNNGG 1 cut(s) 332
BseNI ACTGG 2 cut(s) 82, 427
BseXI GCAGC 2 cut(s) 152, 221
BshFI GGCC 2 cut(s) 200, 258
BslFI GGGAC 1 cut(s) 393
BslI CCNNNNNNNGG 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 393
BsnI GGCC 2 cut(s) 200, 258
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 2 cut(s) 97, 377
BspANI GGCC 2 cut(s) 200, 258
BspLI GGNNCC 1 cut(s) 381
BsrI ACTGG 2 cut(s) 82, 427
BssMI GATC 1 cut(s) 202
Bst4CI ACNGT 1 cut(s) 122
BstAPI GCANNNNNTGC 1 cut(s) 399
BstC8I GCNNGC 2 cut(s) 198, 288
BstF5I GGATG 5 cut(s) 86, 102, 215, 338, 523
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 3 cut(s) 187, 206, 399
BstNSI RCATGY 1 cut(s) 181
BstV1I GCAGC 2 cut(s) 152, 221
BsuRI GGCC 2 cut(s) 200, 258
BtgZI GCGATG 1 cut(s) 449
BtsCI GGATG 5 cut(s) 86, 102, 215, 338, 523
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 2 cut(s) 198, 288
Cfr13I GGNCC 2 cut(s) 257, 380
CspCI CAANNNNNGTGG 2 cut(s) 229, 264
CviAII CATG 2 cut(s) 178, 482
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
DriI GACNNNNNGTC 1 cut(s) 510
Eam1105I GACNNNNNGTC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 380
FaeI CATG 2 cut(s) 181, 485
FaiI YATR 6 cut(s) 15, 32, 155, 179, 483, 501
FaqI GGGAC 1 cut(s) 393
FatI CATG 2 cut(s) 177, 481
FauI CCCGC 1 cut(s) 370
Fnu4HI GCNGC 2 cut(s) 141, 210
FokI GGATG 5 cut(s) 89, 93, 202, 325, 530
Fsp4HI GCNGC 2 cut(s) 141, 210
FspBI CTAG 2 cut(s) 92, 571
GluI GCNGC 2 cut(s) 141, 210
HaeIII GGCC 2 cut(s) 200, 258
Hin1II CATG 2 cut(s) 181, 485
HinfI GANTC 1 cut(s) 62
HphI GGTGA 1 cut(s) 376
Hpy188I TCNGA 2 cut(s) 134, 475
Hpy188III TCNNGA 3 cut(s) 68, 92, 515
HpyAV CCTTC 2 cut(s) 129, 460
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4V TGCA 5 cut(s) 45, 111, 286, 393, 435
HpyF10VI GCNNNNNNNGC 3 cut(s) 187, 206, 399
Hsp92II CATG 2 cut(s) 181, 485
Kzo9I GATC 1 cut(s) 202
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 9 cut(s) 63, 176, 182, 191, 273, 276, 408, 495, 552
Lsp1109I GCAGC 2 cut(s) 152, 221
LweI GCATC 3 cut(s) 71, 380, 508
MaeI CTAG 2 cut(s) 92, 571
MaeIII GTNAC 2 cut(s) 167, 352
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 1 cut(s) 121
MfeI CAATTG 1 cut(s) 430
MluCI AATT 2 cut(s) 22, 430
MlyI GAGTC 1 cut(s) 56
MnlI CCTC 3 cut(s) 295, 352, 355
MseI TTAA 3 cut(s) 18, 50, 114
MunI CAATTG 1 cut(s) 430
MwoI GCNNNNNNNGC 3 cut(s) 187, 206, 399
NdeII GATC 1 cut(s) 202
NlaIII CATG 2 cut(s) 181, 485
NlaIV GGNNCC 1 cut(s) 381
NspI RCATGY 1 cut(s) 181
PflMI CCANNNNNTGG 1 cut(s) 332
PkrI GCNGC 2 cut(s) 142, 211
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PshBI ATTAAT 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 381
PspPI GGNCC 2 cut(s) 257, 380
SaqAI TTAA 3 cut(s) 18, 50, 114
SatI GCNGC 2 cut(s) 141, 210
Sau3AI GATC 1 cut(s) 202
Sau96I GGNCC 2 cut(s) 257, 380
SchI GAGTC 1 cut(s) 56
SetI ASST 5 cut(s) 91, 145, 292, 366, 452
SfaNI GCATC 3 cut(s) 71, 380, 508
SinI GGWCC 1 cut(s) 380
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 2 cut(s) 22, 430
SsiI CCGC 2 cut(s) 97, 377
SspMI CTAG 2 cut(s) 92, 571
TaaI ACNGT 1 cut(s) 122
TaqI TCGA 1 cut(s) 279
TasI AATT 2 cut(s) 22, 430
Tru1I TTAA 3 cut(s) 18, 50, 114
Tru9I TTAA 3 cut(s) 18, 50, 114
TscAI CASTG 1 cut(s) 312
TseI GCWGC 2 cut(s) 140, 209
TspDTI ATGAA 3 cut(s) 17, 87, 164
TspRI CASTG 1 cut(s) 312
Van91I CCANNNNNTGG 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 380
VspI ATTAAT 1 cut(s) 114
XbaI TCTAGA 1 cut(s) 91
XceI RCATGY 1 cut(s) 181
XspI CTAG 2 cut(s) 92, 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.