RLG00000036671

Zinc finger A20 and AN1 domain-containing stress-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000730
Physical Location & Seq
Forward (+)
83162623 .. 83164389
1767 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036671

Sequence Viewer

Length: 690 bp
ATGGTCCTTATTAAATTTCCAAGAGAGGAGCGTCGCGCAGATAGAAAAACAGAGAAGCACGTCTCTCCTCTTCTCTCTCCTCTCGACGATCTCAAAAAATCTGCTGCTAGGGGGGCCCTCTTGTCCGATGCGATTCTGAGCTCGGGGGATCGGTTTCGGAGGTTTCATTTCAAGAATCTTGATTTACAGGGAGGGTTGAAAAAATGGACCACGAGGACACTGGATGTCAAGCTGCCCCTGAGGGAGCAGGCTAAGCTTGCTGCATCATCAATTGGAAGTATTGTCAATGGAACCTCAAGCAGCCACGGGAAGGAACCTGTTGCTGCTAATCCAATGGACCCAAAAACTATCCCTATGAACTCGACCATTACATTTAGGTCAGAGTACGACTCTCCTTCCCCCTTTGCTTTTGGGTCATCGGAGACAGCTGTGGCAAAGCCTGGCCCAGAATCATTTACTTTTGGGTCAGGGCAAAATGGTGAGCCGAAGCCAGAGGGCCCAAAGCGCTGCGCTACCTGCAACAAGCGGGTGGGTTTAACAGGATTCAATTGTCGCTGCGGTGACCTTTTCTGTGCAGTACATCGTTATTCAGACAAACATGACTGCCCCTATGATTATCGTACTGCTGGTCGCGATGCCATTGCTAAAGCCAATCCTGTTGTCAAAGCTGAGAAGCTTGATAAAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

230

Amino Acids

25.08

Weight (kDa)

9.53

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-AN1 PF01428 170 - 206 5e-09 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 524
AccII CGCG 2 cut(s) 36, 633
AciI CCGC 2 cut(s) 526, 558
AclWI GGATC 1 cut(s) 156
AcsI RAATTY 1 cut(s) 14
AfaI GTAC 3 cut(s) 386, 579, 622
AfeI AGCGCT 1 cut(s) 506
AfiI CCNNNNNNNGG 1 cut(s) 310
AgsI TTSAA 3 cut(s) 172, 199, 547
AjiI CACGTC 1 cut(s) 61
AjnI CCWGG 1 cut(s) 439
AluBI AGCT 6 cut(s) 141, 232, 256, 428, 668, 676
AluI AGCT 6 cut(s) 141, 232, 256, 428, 668, 676
Alw21I GWGCWC 1 cut(s) 143
Alw26I GTCTC 2 cut(s) 67, 416
AlwI GGATC 1 cut(s) 156
Ama87I CYCGRG 1 cut(s) 142
Aor51HI AGCGCT 1 cut(s) 506
AoxI GGCC 3 cut(s) 114, 442, 496
ApaI GGGCCC 2 cut(s) 118, 500
ApeKI GCWGC 7 cut(s) 104, 232, 260, 300, 323, 507, 555
ApoI RAATTY 1 cut(s) 14
AspLEI GCGC 3 cut(s) 38, 507, 512
AspS9I GGNCC 8 cut(s) 4, 114, 115, 207, 337, 443, 496, 497
AsuHPI GGTGA 2 cut(s) 491, 572
AvaI CYCGRG 1 cut(s) 142
AvaII GGWCC 3 cut(s) 4, 207, 337
AxyI CCTNAGG 1 cut(s) 239
BaeGI GKGCMC 2 cut(s) 118, 500
BanII GRGCYC 3 cut(s) 118, 143, 500
BauI CACGAG 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 7 cut(s) 91, 219, 247, 310, 312, 494, 542
BcgI CGANNNNNNTGC 2 cut(s) 623, 657
BciT130I CCWGG 1 cut(s) 441
BcoDI GTCTC 2 cut(s) 67, 416
BfaI CTAG 1 cut(s) 108
BfoI RGCGCY 1 cut(s) 508
BfuAI ACCTGC 1 cut(s) 524
BisI GCNGC 7 cut(s) 105, 233, 261, 301, 324, 508, 556
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 7 cut(s) 106, 234, 262, 302, 325, 509, 557
Bme1390I CCNGG 1 cut(s) 441
Bme18I GGWCC 3 cut(s) 4, 207, 337
BmeT110I CYCGRG 1 cut(s) 142
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 8 cut(s) 4, 114, 115, 207, 337, 443, 496, 497
BmiI GGNNCC 6 cut(s) 115, 116, 292, 315, 339, 498
BmrFI CCNGG 1 cut(s) 441
BmsI GCATC 3 cut(s) 118, 272, 625
BplI GAGNNNNNCTC 2 cut(s) 374, 406
Bpu1102I GCTNAGC 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 280
BsaJI CCNNGG 1 cut(s) 304
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse1I ACTGG 1 cut(s) 225
Bse21I CCTNAGG 1 cut(s) 239
Bse3DI GCAATG 1 cut(s) 639
BseBI CCWGG 1 cut(s) 441
BseDI CCNNGG 1 cut(s) 304
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMI GCAATG 1 cut(s) 639
BseMII CTCAG 3 cut(s) 128, 230, 660
BseNI ACTGG 1 cut(s) 225
BseRI GAGGAG 3 cut(s) 41, 57, 69
BseSI GKGCMC 2 cut(s) 118, 500
BseXI GCAGC 7 cut(s) 91, 219, 247, 310, 312, 494, 542
BsgI GTGCAG 1 cut(s) 594
Bsh1236I CGCG 2 cut(s) 36, 633
BshFI GGCC 3 cut(s) 116, 444, 498
BsiHKAI GWGCWC 1 cut(s) 143
BsiHKCI CYCGRG 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 310
BsmAI GTCTC 2 cut(s) 67, 416
BsmBI CGTCTC 1 cut(s) 67
BsnI GGCC 3 cut(s) 116, 444, 498
BsoBI CYCGRG 1 cut(s) 142
Bsp120I GGGCCC 2 cut(s) 114, 496
Bsp1286I GDGCHC 3 cut(s) 118, 143, 500
Bsp143I GATC 2 cut(s) 88, 148
Bsp1720I GCTNAGC 1 cut(s) 252
Bsp68I TCGCGA 1 cut(s) 633
BspACI CCGC 2 cut(s) 526, 558
BspANI GGCC 3 cut(s) 116, 444, 498
BspCNI CTCAG 3 cut(s) 129, 231, 661
BspFNI CGCG 2 cut(s) 36, 633
BspLI GGNNCC 6 cut(s) 115, 116, 292, 315, 339, 498
BspMI ACCTGC 1 cut(s) 524
BspPI GGATC 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 639
BsrI ACTGG 1 cut(s) 225
BssECI CCNNGG 1 cut(s) 304
BssMI GATC 2 cut(s) 88, 148
BssSI CACGAG 1 cut(s) 211
Bst2BI CACGAG 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 441
Bst6I CTCTTC 1 cut(s) 75
BstC8I GCNNGC 2 cut(s) 249, 258
BstDEI CTNAG 4 cut(s) 137, 239, 252, 669
BstDSI CCRYGG 1 cut(s) 304
BstEII GGTNACC 1 cut(s) 560
BstF5I GGATG 1 cut(s) 229
BstFNI CGCG 2 cut(s) 36, 633
BstH2I RGCGCY 1 cut(s) 508
BstHHI GCGC 3 cut(s) 38, 507, 512
BstKTI GATC 2 cut(s) 91, 151
BstMAI GTCTC 2 cut(s) 67, 416
BstMBI GATC 2 cut(s) 88, 148
BstMWI GCNNNNNNNGC 5 cut(s) 113, 253, 257, 504, 516
BstNI CCWGG 1 cut(s) 441
BstPI GGTNACC 1 cut(s) 560
BstSCI CCNGG 1 cut(s) 439
BstSLI GKGCMC 2 cut(s) 118, 500
BstUI CGCG 2 cut(s) 36, 633
BstV1I GCAGC 7 cut(s) 91, 219, 247, 310, 312, 494, 542
Bsu36I CCTNAGG 1 cut(s) 239
BsuRI GGCC 3 cut(s) 116, 444, 498
BtgI CCRYGG 1 cut(s) 304
BtgZI GCGATG 1 cut(s) 648
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 218
BtuMI TCGCGA 1 cut(s) 633
BveI ACCTGC 1 cut(s) 524
Cac8I GCNNGC 2 cut(s) 249, 258
CfoI GCGC 3 cut(s) 38, 507, 512
Cfr13I GGNCC 8 cut(s) 4, 114, 115, 207, 337, 443, 496, 497
CseI GACGC 1 cut(s) 20
Csp6I GTAC 3 cut(s) 385, 578, 621
CviAII CATG 1 cut(s) 599
CviQI GTAC 3 cut(s) 385, 578, 621
DdeI CTNAG 4 cut(s) 137, 239, 252, 669
DpnI GATC 2 cut(s) 90, 150
DpnII GATC 2 cut(s) 88, 148
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Ecl136II GAGCTC 1 cut(s) 141
Eco24I GRGCYC 3 cut(s) 118, 143, 500
Eco47I GGWCC 3 cut(s) 4, 207, 337
Eco47III AGCGCT 1 cut(s) 506
Eco53kI GAGCTC 1 cut(s) 141
Eco81I CCTNAGG 1 cut(s) 239
Eco88I CYCGRG 1 cut(s) 142
Eco91I GGTNACC 1 cut(s) 560
EcoICRI GAGCTC 1 cut(s) 141
EcoO109I RGGNCCY 3 cut(s) 114, 115, 496
EcoO65I GGTNACC 1 cut(s) 560
EcoRII CCWGG 1 cut(s) 439
EcoT38I GRGCYC 3 cut(s) 118, 143, 500
Esp3I CGTCTC 1 cut(s) 67
FaeI CATG 1 cut(s) 602
FaiI YATR 4 cut(s) 356, 600, 612, 688
FatI CATG 1 cut(s) 598
FauI CCCGC 1 cut(s) 519
Fnu4HI GCNGC 7 cut(s) 105, 233, 261, 301, 324, 508, 556
FokI GGATG 1 cut(s) 236
FriOI GRGCYC 3 cut(s) 118, 143, 500
Fsp4HI GCNGC 7 cut(s) 105, 233, 261, 301, 324, 508, 556
FspBI CTAG 1 cut(s) 108
GlaI GCGC 3 cut(s) 37, 506, 511
GluI GCNGC 7 cut(s) 105, 233, 261, 301, 324, 508, 556
HaeII RGCGCY 1 cut(s) 508
HaeIII GGCC 3 cut(s) 116, 444, 498
HgaI GACGC 1 cut(s) 20
HhaI GCGC 3 cut(s) 38, 507, 512
Hin1II CATG 1 cut(s) 602
Hin6I GCGC 3 cut(s) 36, 505, 510
HinP1I GCGC 3 cut(s) 36, 505, 510
HindIII AAGCTT 2 cut(s) 254, 674
HinfI GANTC 5 cut(s) 133, 175, 389, 449, 543
HphI GGTGA 2 cut(s) 491, 572
Hpy188I TCNGA 6 cut(s) 127, 138, 159, 382, 421, 592
Hpy188III TCNNGA 4 cut(s) 83, 172, 179, 632
Hpy99I CGWCG 2 cut(s) 36, 89
HpyAV CCTTC 2 cut(s) 304, 405
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 3 cut(s) 263, 519, 575
HpyF10VI GCNNNNNNNGC 5 cut(s) 113, 253, 257, 504, 516
HpyF3I CTNAG 4 cut(s) 137, 239, 252, 669
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 1 cut(s) 602
HspAI GCGC 3 cut(s) 36, 505, 510
Kzo9I GATC 2 cut(s) 88, 148
LmnI GCTCC 2 cut(s) 28, 244
Lsp1109I GCAGC 7 cut(s) 91, 219, 247, 310, 312, 494, 542
LweI GCATC 3 cut(s) 118, 272, 625
MaeI CTAG 1 cut(s) 108
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 560
MalI GATC 2 cut(s) 90, 150
MboI GATC 2 cut(s) 88, 148
MboII GAAGA 1 cut(s) 62
MfeI CAATTG 2 cut(s) 270, 547
MhlI GDGCHC 3 cut(s) 118, 143, 500
MluCI AATT 3 cut(s) 14, 270, 547
MlyI GAGTC 1 cut(s) 383
MseI TTAA 2 cut(s) 12, 536
MspA1I CMGCKG 1 cut(s) 428
MspR9I CCNGG 1 cut(s) 441
MteI GCGCNGCGC 1 cut(s) 508
MunI CAATTG 2 cut(s) 270, 547
MvaI CCWGG 1 cut(s) 441
MvnI CGCG 2 cut(s) 36, 633
MwoI GCNNNNNNNGC 5 cut(s) 113, 253, 257, 504, 516
NdeII GATC 2 cut(s) 88, 148
NlaIII CATG 1 cut(s) 602
NlaIV GGNNCC 6 cut(s) 115, 116, 292, 315, 339, 498
NmuCI GTSAC 1 cut(s) 560
NruI TCGCGA 1 cut(s) 633
PfeI GAWTC 4 cut(s) 133, 175, 449, 543
PkrI GCNGC 7 cut(s) 106, 234, 262, 302, 325, 509, 557
PleI GAGTC 1 cut(s) 383
PpsI GAGTC 1 cut(s) 383
Psp124BI GAGCTC 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 439
PspEI GGTNACC 1 cut(s) 560
PspGI CCWGG 1 cut(s) 439
PspN4I GGNNCC 6 cut(s) 115, 116, 292, 315, 339, 498
PspOMI GGGCCC 2 cut(s) 114, 496
PspPI GGNCC 8 cut(s) 4, 114, 115, 207, 337, 443, 496, 497
PvuII CAGCTG 1 cut(s) 428
RruI TCGCGA 1 cut(s) 633
RsaI GTAC 3 cut(s) 386, 579, 622
RsaNI GTAC 3 cut(s) 385, 578, 621
SacI GAGCTC 1 cut(s) 143
SaqAI TTAA 2 cut(s) 12, 536
SatI GCNGC 7 cut(s) 105, 233, 261, 301, 324, 508, 556
Sau3AI GATC 2 cut(s) 88, 148
Sau96I GGNCC 8 cut(s) 4, 114, 115, 207, 337, 443, 496, 497
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 1 cut(s) 441
SduI GDGCHC 3 cut(s) 118, 143, 500
SfaNI GCATC 3 cut(s) 118, 272, 625
SinI GGWCC 3 cut(s) 4, 207, 337
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
Sse9I AATT 3 cut(s) 14, 270, 547
SsiI CCGC 2 cut(s) 526, 558
SspMI CTAG 1 cut(s) 108
SstI GAGCTC 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 439
TaiI ACGT 1 cut(s) 63
TaqI TCGA 2 cut(s) 84, 362
TasI AATT 3 cut(s) 14, 270, 547
TatI WGTACW 1 cut(s) 577
TfiI GAWTC 4 cut(s) 133, 175, 449, 543
Tru1I TTAA 2 cut(s) 12, 536
Tru9I TTAA 2 cut(s) 12, 536
TscAI CASTG 1 cut(s) 225
TseFI GTSAC 1 cut(s) 560
TseI GCWGC 7 cut(s) 104, 232, 260, 300, 323, 507, 555
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 2 cut(s) 155, 371
TspRI CASTG 1 cut(s) 225
VpaK11BI GGWCC 3 cut(s) 4, 207, 337
XapI RAATTY 1 cut(s) 14
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.