Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000730

Physical Location & Seq

Genomic Coordinates Reverse (-)

1309477 .. 1313967

Gene Structure 4491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g00820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAGCACAACGAGACAGGATGCCAAGCGCCTCCAGAAGCTCCCAAACTTTGTGCCAATAACTGTGGATTCTTTGGAAGTGCAGCAACCATGAACTTGTGTTCCAAATGCCACAAGGACTTGGTACTGAAGCAAGAACAGGCCAAAGTCGCTGCAGTGTCCATTGAAAGTGCTGTGAATGCCACTCCCAATAACTGGGGAAAGAAGCCTGCTGTGACTTTAGATGTCCAAGCTGGTTCGCCAGATTTGCCTCTTATCTCAACAGAGGCATCCAGTACTCCGCCTCCAAACAATGAGGAGAAGGTGAAAGAGACTCCCACCCGGTGCAACACTTGCAGGAAACGTGTTGGTCTGACTGGGTTCAATTGCCGATGTGGACATCTATTCTGTGCAGTTCATCGCTACTCTGATAAACATGCCTGTCAATATGACTATCGAGCTGCTGCGCAGGATGCTATAGCAAAAGCCAACCCTGTTGTCAAGGCTGAAAAGCTGGATAAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

169

Amino Acids

18.11

Weight (kDa)

8.47

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	17 - 39	7e-12	A20-like zinc finger
zf-AN1	PF01428	109 - 145	3.4e-08	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51200 AT1G51200 AT1G51200 AT1G51200
fragaria_vesca	FvH4_3g43080 FvH4_5g21790 FvH4_6g23060 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820
malus_domestica	MD02G1314500.v1.1 MD03G1024100.v1.1 MD07G1007700.v1.1 MD11G1029000.v1.1 MD11G1029100.v1.1 MD12G1065100.v1.1 MD14G1065100.v1.1
prunus_persica	Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.7G068900_v2.0.a1 Prupe.7G068900_v2.0.a1
pyrus_communis	pycom02g26370 pycom03g02080 pycom07g00630 pycom12g05690 pycom14g05300
rosa_chinensis	RchiOBHm_Chr1g0314981 RchiOBHm_Chr3g0480911 RchiOBHm_Chr5g0077181 RchiOBHm_Chr7g0209301
rosa_laevigata	RLG00000003146 RLG00000023442 RLG00000030750 RLG00000036671
rosa_multiflora	Rmu_sc0001701.1_g000022 Rmu_sc0004844.1_g000003 Rmu_sc0005168.1_g000016 Rmu_sc0013573.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004900 Rroxscaffold_6G00400890
rosa_rugosa	Rorug01G0004100 Rorug03G0187500 Rorug03G0187600 Rorug03G0187600 Rorug03G0187700 Rorug05G0452400 Rorug05G0452500 Rorug05G0452600 Rorug05G0452600 Rorug05G0452700 Rorug07G0111300
rosa_samantha	Rh1AG014500 Rh1BG006300 Rh1CG012600 Rh3AG238900 Rh3BG273100 Rh3CG268600 Rh3DG264600 Rh5AG507400 Rh5BG529000 Rh5CG553500 Rh5DG540800 Rh7DG252000
rosa_wichuraiana	Rw1G000700 Rw3G021380 Rw5G046990 Rw7G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	447
AccB7I	CCANNNNNTGG	1 cut(s)	195
AciI	CCGC	1 cut(s)	281
AcuI	CTGAAG	1 cut(s)	149
AdeI	CACNNNGTG	1 cut(s)	324
AfaI	GTAC	2 cut(s)	126, 277
AfiI	CCNNNNNNNGG	1 cut(s)	195
AflIII	ACRYGT	1 cut(s)	343
AgsI	TTSAA	2 cut(s)	167, 364
AloI	GAACNNNNNNTCC	2 cut(s)	86, 118
AluBI	AGCT	4 cut(s)	41, 233, 440, 493
AluI	AGCT	4 cut(s)	41, 233, 440, 493
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	2 cut(s)	8, 305
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	4 cut(s)	83, 152, 440, 443
AspLEI	GCGC	2 cut(s)	31, 448
AsuC2I	CCSGG	1 cut(s)	322
AsuHPI	GGTGA	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	4 cut(s)	95, 139, 427, 430
BcnI	CCSGG	1 cut(s)	322
BcoDI	GTCTC	2 cut(s)	8, 305
BfmI	CTRYAG	2 cut(s)	153, 456
BfoI	RGCGCY	1 cut(s)	32
BisI	GCNGC	4 cut(s)	84, 153, 441, 444
BlsI	GCNGC	4 cut(s)	85, 154, 442, 445
BmcAI	AGTACT	1 cut(s)	277
Bme1390I	CCNGG	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	322
BmrI	ACTGGG	2 cut(s)	205, 366
BmsI	GCATC	3 cut(s)	11, 278, 442
BmuI	ACTGGG	2 cut(s)	205, 366
BpmI	CTGGAG	1 cut(s)	18
BpuMI	CCSGG	1 cut(s)	322
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	1 cut(s)	195
Bse1I	ACTGG	3 cut(s)	200, 273, 361
BseGI	GGATG	3 cut(s)	26, 269, 457
BseLI	CCNNNNNNNGG	1 cut(s)	195
BseNI	ACTGG	3 cut(s)	200, 273, 361
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	4 cut(s)	95, 139, 427, 430
BsgI	GTGCAG	2 cut(s)	102, 411
BshFI	GGCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	322
BslI	CCNNNNNNNGG	1 cut(s)	195
BsmAI	GTCTC	2 cut(s)	8, 305
BsmI	GAATGC	1 cut(s)	184
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	9
BspACI	CCGC	1 cut(s)	281
BspANI	GGCC	1 cut(s)	143
BspMAI	CTGCAG	1 cut(s)	157
BsrI	ACTGG	3 cut(s)	200, 273, 361
Bst4CI	ACNGT	1 cut(s)	65
BstAPI	GCANNNNNTGC	1 cut(s)	333
BstC8I	GCNNGC	1 cut(s)	210
BstF5I	GGATG	3 cut(s)	26, 269, 457
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	2 cut(s)	31, 448
BstMAI	GTCTC	2 cut(s)	8, 305
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 179, 247, 333, 452
BstNSI	RCATGY	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	320
BstSFI	CTRYAG	2 cut(s)	153, 456
BstV1I	GCAGC	4 cut(s)	95, 139, 427, 430
BsuRI	GGCC	1 cut(s)	143
BtgZI	GCGATG	1 cut(s)	383
BtsCI	GGATG	3 cut(s)	26, 269, 457
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	210
CfoI	GCGC	2 cut(s)	31, 448
Csp6I	GTAC	2 cut(s)	125, 276
CspCI	CAANNNNNGTGG	2 cut(s)	46, 81
CviAII	CATG	2 cut(s)	91, 416
CviJI	RGCY	8 cut(s)	41, 143, 208, 233, 440, 467, 485, 493
CviKI_1	RGCY	8 cut(s)	41, 143, 208, 233, 440, 467, 485, 493
CviQI	GTAC	2 cut(s)	125, 276
DraIII	CACNNNGTG	1 cut(s)	324
EciI	GGCGGA	1 cut(s)	270
Eco57I	CTGAAG	1 cut(s)	149
FaeI	CATG	2 cut(s)	94, 419
FaiI	YATR	5 cut(s)	92, 417, 429, 458, 505
FatI	CATG	2 cut(s)	90, 415
Fnu4HI	GCNGC	4 cut(s)	84, 153, 441, 444
FokI	GGATG	3 cut(s)	33, 256, 464
Fsp4HI	GCNGC	4 cut(s)	84, 153, 441, 444
FspI	TGCGCA	1 cut(s)	447
GlaI	GCGC	2 cut(s)	30, 447
GluI	GCNGC	4 cut(s)	84, 153, 441, 444
GsuI	CTGGAG	1 cut(s)	18
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	1 cut(s)	322
HhaI	GCGC	2 cut(s)	31, 448
Hin1II	CATG	2 cut(s)	94, 419
Hin6I	GCGC	2 cut(s)	29, 446
HinP1I	GCGC	2 cut(s)	29, 446
HinfI	GANTC	2 cut(s)	69, 313
HpaII	CCGG	1 cut(s)	322
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	2 cut(s)	354, 409
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	377
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	5 cut(s)	83, 155, 327, 336, 392
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 179, 247, 333, 452
HpySE526I	ACGT	1 cut(s)	343
Hsp92II	CATG	2 cut(s)	94, 419
HspAI	GCGC	2 cut(s)	29, 446
LmnI	GCTCC	2 cut(s)	4, 46
Lsp1109I	GCAGC	4 cut(s)	95, 139, 427, 430
LweI	GCATC	3 cut(s)	11, 278, 442
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	1 cut(s)	214
MfeI	CAATTG	1 cut(s)	364
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	1 cut(s)	364
MlyI	GAGTC	1 cut(s)	307
MnlI	CCTC	5 cut(s)	42, 259, 261, 289, 294
MspI	CCGG	1 cut(s)	322
MspR9I	CCNGG	1 cut(s)	322
MunI	CAATTG	1 cut(s)	364
Mva1269I	GAATGC	1 cut(s)	184
MwoI	GCNNNNNNNGC	5 cut(s)	149, 179, 247, 333, 452
NciI	CCSGG	1 cut(s)	322
NlaIII	CATG	2 cut(s)	94, 419
NmuCI	GTSAC	1 cut(s)	214
NsbI	TGCGCA	1 cut(s)	447
NspI	RCATGY	1 cut(s)	419
PctI	GAATGC	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	69
PflMI	CCANNNNNTGG	1 cut(s)	195
PkrI	GCNGC	4 cut(s)	85, 154, 442, 445
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	157
RsaI	GTAC	2 cut(s)	126, 277
RsaNI	GTAC	2 cut(s)	125, 276
SatI	GCNGC	4 cut(s)	84, 153, 441, 444
ScaI	AGTACT	1 cut(s)	277
SchI	GAGTC	1 cut(s)	307
ScrFI	CCNGG	1 cut(s)	322
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	6 cut(s)	43, 235, 306, 346, 442, 495
SfaNI	GCATC	3 cut(s)	11, 278, 442
SfcI	CTRYAG	2 cut(s)	153, 456
Sse9I	AATT	1 cut(s)	364
SsiI	CCGC	1 cut(s)	281
StyD4I	CCNGG	1 cut(s)	320
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	1 cut(s)	436
TasI	AATT	1 cut(s)	364
TatI	WGTACW	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	69
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	4 cut(s)	83, 152, 440, 443
Tsp45I	GTSAC	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	107, 386
TspRI	CASTG	1 cut(s)	162
Van91I	CCANNNNNTGG	1 cut(s)	195
XceI	RCATGY	1 cut(s)	419
ZrmI	AGTACT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.