Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000730

Physical Location & Seq

Genomic Coordinates Reverse (-)

1974826 .. 1976767

Gene Structure 1942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1024100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAATATGTGTTCCAAGTGTCACAAGGATATGATGTTGAAACAGGAGCAGGCGAAGCTTGCTGCATCATCCTTTGGAAGCATTGTCAACGGAACATCAAGCATCAATGCAAATGAGCCTGTTGTTGCGGCTGCTACTGTGGATGTTCAACCCCATCCAGTGGAGCCAAAAACTCTCTCATCGCAACCATCATTTTCCTTTGGTTCAGGGTCATCTGGTGAGCCAAAGCCGGAGGGCCCAAAACGTTGCAACACTTGCAACAAGCGGGTTGGACTAACAGGGTTCAATTGTCGGTGTGGTCACCTATTTTGTGCAGTACATCGTTATTCAGACAAACATGACTGCCCTTACGATTATCGCACTGCTGGACGTGATGCTATTGCGAAAGCCAACCCGGTCGTAAAAGCTGAGAAGCTCGATAAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

143

Amino Acids

15.3

Weight (kDa)

8.94

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-AN1	PF01428	83 - 119	5.2e-09	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51200 AT1G51200 AT1G51200 AT1G51200
fragaria_vesca	FvH4_3g43080 FvH4_5g21790 FvH4_6g23060 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820
malus_domestica	MD02G1314500.v1.1 MD03G1024100.v1.1 MD07G1007700.v1.1 MD11G1029000.v1.1 MD11G1029100.v1.1 MD12G1065100.v1.1 MD14G1065100.v1.1
prunus_persica	Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.7G068900_v2.0.a1 Prupe.7G068900_v2.0.a1
pyrus_communis	pycom02g26370 pycom03g02080 pycom07g00630 pycom12g05690 pycom14g05300
rosa_chinensis	RchiOBHm_Chr1g0314981 RchiOBHm_Chr3g0480911 RchiOBHm_Chr5g0077181 RchiOBHm_Chr7g0209301
rosa_laevigata	RLG00000003146 RLG00000023442 RLG00000030750 RLG00000036671
rosa_multiflora	Rmu_sc0001701.1_g000022 Rmu_sc0004844.1_g000003 Rmu_sc0005168.1_g000016 Rmu_sc0013573.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004900 Rroxscaffold_6G00400890
rosa_rugosa	Rorug01G0004100 Rorug03G0187500 Rorug03G0187600 Rorug03G0187600 Rorug03G0187700 Rorug05G0452400 Rorug05G0452500 Rorug05G0452600 Rorug05G0452600 Rorug05G0452700 Rorug07G0111300
rosa_samantha	Rh1AG014500 Rh1BG006300 Rh1CG012600 Rh3AG238900 Rh3BG273100 Rh3CG268600 Rh3DG264600 Rh5AG507400 Rh5BG529000 Rh5CG553500 Rh5DG540800 Rh7DG252000
rosa_wichuraiana	Rw1G000700 Rw3G021380 Rw5G046990 Rw7G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	160
AciI	CCGC	2 cut(s)	128, 265
AclI	AACGTT	1 cut(s)	244
AfaI	GTAC	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	3 cut(s)	40, 149, 286
AjiI	CACGTC	1 cut(s)	371
AluBI	AGCT	3 cut(s)	58, 407, 415
AluI	AGCT	3 cut(s)	58, 407, 415
AoxI	GGCC	1 cut(s)	235
ApaI	GGGCCC	1 cut(s)	239
ApeKI	GCWGC	2 cut(s)	62, 131
AspS9I	GGNCC	2 cut(s)	235, 236
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	2 cut(s)	230, 293
BaeGI	GKGCMC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	239
BbvI	GCAGC	2 cut(s)	49, 118
BccI	CCATC	2 cut(s)	162, 196
BcnI	CCSGG	1 cut(s)	395
BisI	GCNGC	3 cut(s)	63, 129, 132
BlsI	GCNGC	3 cut(s)	64, 130, 133
Bme1390I	CCNGG	1 cut(s)	395
BmgBI	CACGTC	1 cut(s)	371
BmgT120I	GGNCC	2 cut(s)	235, 236
BmiI	GGNNCC	2 cut(s)	165, 237
BmrFI	CCNGG	1 cut(s)	395
BmsI	GCATC	3 cut(s)	74, 111, 364
BpuMI	CCSGG	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	158
BseGI	GGATG	3 cut(s)	68, 148, 154
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	1 cut(s)	158
BseSI	GKGCMC	1 cut(s)	239
BseXI	GCAGC	2 cut(s)	49, 118
BsgI	GTGCAG	1 cut(s)	333
Bsh1285I	CGRYCG	1 cut(s)	399
BshFI	GGCC	1 cut(s)	237
BsiEI	CGRYCG	1 cut(s)	399
BsiSI	CCGG	2 cut(s)	230, 395
BslI	CCNNNNNNNGG	1 cut(s)	160
BsnI	GGCC	1 cut(s)	237
Bsp120I	GGGCCC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	239
BspACI	CCGC	2 cut(s)	128, 265
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	1 cut(s)	400
BspLI	GGNNCC	2 cut(s)	165, 237
BsrI	ACTGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	139
BstAPI	GCANNNNNTGC	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	51, 60
BstDEI	CTNAG	1 cut(s)	408
BstEII	GGTNACC	1 cut(s)	299
BstF5I	GGATG	3 cut(s)	68, 148, 154
BstMCI	CGRYCG	1 cut(s)	399
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 59, 255
BstPI	GGTNACC	1 cut(s)	299
BstSCI	CCNGG	1 cut(s)	393
BstSLI	GKGCMC	1 cut(s)	239
BstV1I	GCAGC	2 cut(s)	49, 118
BsuRI	GGCC	1 cut(s)	237
BtgZI	GCGATG	1 cut(s)	165
BtrI	CACGTC	1 cut(s)	371
BtsCI	GGATG	3 cut(s)	68, 148, 154
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	165, 360
Cac8I	GCNNGC	2 cut(s)	51, 60
Cfr13I	GGNCC	2 cut(s)	235, 236
Csp6I	GTAC	1 cut(s)	317
CviAII	CATG	1 cut(s)	338
CviQI	GTAC	1 cut(s)	317
DdeI	CTNAG	1 cut(s)	408
Eco24I	GRGCYC	1 cut(s)	239
Eco91I	GGTNACC	1 cut(s)	299
EcoO109I	RGGNCCY	1 cut(s)	235
EcoO65I	GGTNACC	1 cut(s)	299
EcoT38I	GRGCYC	1 cut(s)	239
FaeI	CATG	1 cut(s)	341
FaiI	YATR	3 cut(s)	8, 32, 339
FatI	CATG	1 cut(s)	337
FauI	CCCGC	1 cut(s)	258
Fnu4HI	GCNGC	3 cut(s)	63, 129, 132
FokI	GGATG	3 cut(s)	55, 141, 155
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	3 cut(s)	63, 129, 132
GluI	GCNGC	3 cut(s)	63, 129, 132
HaeIII	GGCC	1 cut(s)	237
HapII	CCGG	2 cut(s)	230, 395
Hin1II	CATG	1 cut(s)	341
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	56
HpaII	CCGG	2 cut(s)	230, 395
HphI	GGTGA	2 cut(s)	230, 293
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	331
Hpy8I	GTNNAC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	2 cut(s)	244, 370
HpyCH4V	TGCA	5 cut(s)	65, 110, 249, 258, 314
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 59, 255
HpyF3I	CTNAG	1 cut(s)	408
HpySE526I	ACGT	2 cut(s)	244, 370
Hsp92II	CATG	1 cut(s)	341
LmnI	GCTCC	2 cut(s)	46, 163
Lsp1109I	GCAGC	2 cut(s)	49, 118
LweI	GCATC	3 cut(s)	74, 111, 364
MaeII	ACGT	2 cut(s)	244, 370
MaeIII	GTNAC	2 cut(s)	20, 299
MfeI	CAATTG	1 cut(s)	286
MhlI	GDGCHC	1 cut(s)	239
MluCI	AATT	1 cut(s)	286
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	1 cut(s)	226
MspI	CCGG	2 cut(s)	230, 395
MspR9I	CCNGG	1 cut(s)	395
MunI	CAATTG	1 cut(s)	286
MwoI	GCNNNNNNNGC	3 cut(s)	55, 59, 255
NciI	CCSGG	1 cut(s)	395
NlaIII	CATG	1 cut(s)	341
NlaIV	GGNNCC	2 cut(s)	165, 237
NmuCI	GTSAC	2 cut(s)	20, 299
PflMI	CCANNNNNTGG	1 cut(s)	160
PkrI	GCNGC	3 cut(s)	64, 130, 133
Psp1406I	AACGTT	1 cut(s)	244
PspEI	GGTNACC	1 cut(s)	299
PspN4I	GGNNCC	2 cut(s)	165, 237
PspOMI	GGGCCC	1 cut(s)	235
PspPI	GGNCC	2 cut(s)	235, 236
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
SatI	GCNGC	3 cut(s)	63, 129, 132
Sau96I	GGNCC	2 cut(s)	235, 236
ScrFI	CCNGG	1 cut(s)	395
SduI	GDGCHC	1 cut(s)	239
SetI	ASST	6 cut(s)	60, 247, 306, 373, 409, 417
SfaNI	GCATC	3 cut(s)	74, 111, 364
Sse9I	AATT	1 cut(s)	286
SsiI	CCGC	2 cut(s)	128, 265
StyD4I	CCNGG	1 cut(s)	393
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	2 cut(s)	247, 373
TaqI	TCGA	1 cut(s)	417
TasI	AATT	1 cut(s)	286
TatI	WGTACW	1 cut(s)	316
TauI	GCSGC	1 cut(s)	131
TscAI	CASTG	2 cut(s)	165, 367
TseFI	GTSAC	2 cut(s)	20, 299
TseI	GCWGC	2 cut(s)	62, 131
Tsp45I	GTSAC	2 cut(s)	20, 299
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	2 cut(s)	165, 367
Van91I	CCANNNNNTGG	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.