Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000730

Physical Location & Seq

Genomic Coordinates Forward (+)

36975465 .. 36978476

Gene Structure 3012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1314500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAATCTGTGTTCCAAGTGCCACAAGGACTTGGTGTTGAAGCAAGAACAAGCTAAAGTCGTTGCGGCATCCATTGATAGCGCGGTGAATGGCAGCCCCTCTGAAAGTGGGAAGGGGCCTGTTGCTACTGCTGCTGTAGATGTACAAGCTGGCCCCGCAGATGTGATGCTTATCTCAACACAGGCATCCTCTACTCCATCTTTGAACATTAAGAGGGAGGAGAAGGTGAAAGAGACTCCTACCAGGTGCGGCACTTGCAGGAAACGTGTTGGTCTAACTGGGTTCAGTTGCCGATGTGGAGATCTCTTTTGTGCAGTTCATCGGTACTCTGATAAACACAACTGCCCTCATGATTACCGGACTGCTGCTCAGGATGCAATAGCCAAAGCCAACCCGGTTGTCAAGGCAGAAAAGCTGGATAAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

143

Amino Acids

15.14

Weight (kDa)

8.94

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-AN1	PF01428	83 - 119	1.5e-08	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51200 AT1G51200 AT1G51200 AT1G51200
fragaria_vesca	FvH4_3g43080 FvH4_5g21790 FvH4_6g23060 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820
malus_domestica	MD02G1314500.v1.1 MD03G1024100.v1.1 MD07G1007700.v1.1 MD11G1029000.v1.1 MD11G1029100.v1.1 MD12G1065100.v1.1 MD14G1065100.v1.1
prunus_persica	Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.7G068900_v2.0.a1 Prupe.7G068900_v2.0.a1
pyrus_communis	pycom02g26370 pycom03g02080 pycom07g00630 pycom12g05690 pycom14g05300
rosa_chinensis	RchiOBHm_Chr1g0314981 RchiOBHm_Chr3g0480911 RchiOBHm_Chr5g0077181 RchiOBHm_Chr7g0209301
rosa_laevigata	RLG00000003146 RLG00000023442 RLG00000030750 RLG00000036671
rosa_multiflora	Rmu_sc0001701.1_g000022 Rmu_sc0004844.1_g000003 Rmu_sc0005168.1_g000016 Rmu_sc0013573.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004900 Rroxscaffold_6G00400890
rosa_rugosa	Rorug01G0004100 Rorug03G0187500 Rorug03G0187600 Rorug03G0187600 Rorug03G0187700 Rorug05G0452400 Rorug05G0452500 Rorug05G0452600 Rorug05G0452600 Rorug05G0452700 Rorug07G0111300
rosa_samantha	Rh1AG014500 Rh1BG006300 Rh1CG012600 Rh3AG238900 Rh3BG273100 Rh3CG268600 Rh3DG264600 Rh5AG507400 Rh5BG529000 Rh5CG553500 Rh5DG540800 Rh7DG252000
rosa_wichuraiana	Rw1G000700 Rw3G021380 Rw5G046990 Rw7G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	83
AciI	CCGC	4 cut(s)	65, 83, 156, 249
AfaI	GTAC	2 cut(s)	144, 326
AflIII	ACRYGT	1 cut(s)	265
AgsI	TTSAA	2 cut(s)	40, 205
AjnI	CCWGG	1 cut(s)	242
AluBI	AGCT	3 cut(s)	53, 149, 415
AluI	AGCT	3 cut(s)	53, 149, 415
Alw26I	GTCTC	1 cut(s)	227
AoxI	GGCC	2 cut(s)	116, 151
ApeKI	GCWGC	3 cut(s)	93, 131, 365
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	2 cut(s)	116, 152
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	2 cut(s)	97, 238
BbvI	GCAGC	3 cut(s)	105, 118, 352
BccI	CCATC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	244
BcnI	CCSGG	1 cut(s)	395
BcoDI	GTCTC	1 cut(s)	227
BfmI	CTRYAG	1 cut(s)	135
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	5 cut(s)	66, 94, 132, 250, 366
BlsI	GCNGC	5 cut(s)	67, 95, 133, 251, 367
Bme1390I	CCNGG	2 cut(s)	244, 395
BmgT120I	GGNCC	2 cut(s)	116, 152
BmiI	GGNNCC	2 cut(s)	117, 154
BmrFI	CCNGG	2 cut(s)	244, 395
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	4 cut(s)	77, 156, 194, 364
BmuI	ACTGGG	1 cut(s)	288
Bpu10I	CCTNAGC	1 cut(s)	369
BpuMI	CCSGG	1 cut(s)	395
BsaBI	GATNNNNATC	1 cut(s)	170
BsaWI	WCCGGW	1 cut(s)	357
Bse1I	ACTGG	1 cut(s)	283
Bse8I	GATNNNNATC	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	244
BseGI	GGATG	3 cut(s)	68, 185, 379
BseJI	GATNNNNATC	1 cut(s)	170
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	3 cut(s)	105, 118, 352
BsgI	GTGCAG	1 cut(s)	333
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	2 cut(s)	118, 153
BsiSI	CCGG	2 cut(s)	358, 395
BsmAI	GTCTC	1 cut(s)	227
BsnI	GGCC	2 cut(s)	118, 153
Bsp1407I	TGTACA	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	301
BspACI	CCGC	4 cut(s)	65, 83, 156, 249
BspANI	GGCC	2 cut(s)	118, 153
BspCNI	CTCAG	1 cut(s)	382
BspFNI	CGCG	1 cut(s)	83
BspHI	TCATGA	1 cut(s)	349
BspLI	GGNNCC	2 cut(s)	117, 154
BsrGI	TGTACA	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	283
BssMI	GATC	1 cut(s)	301
Bst2UI	CCWGG	1 cut(s)	244
BstAUI	TGTACA	1 cut(s)	142
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	1 cut(s)	369
BstF5I	GGATG	3 cut(s)	68, 185, 379
BstFNI	CGCG	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	1 cut(s)	301
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 155, 255, 374
BstNI	CCWGG	1 cut(s)	244
BstSCI	CCNGG	2 cut(s)	242, 393
BstSFI	CTRYAG	1 cut(s)	135
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	3 cut(s)	105, 118, 352
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BsuRI	GGCC	2 cut(s)	118, 153
BtsCI	GGATG	3 cut(s)	68, 185, 379
Cac8I	GCNNGC	1 cut(s)	151
CciI	TCATGA	1 cut(s)	349
CfoI	GCGC	1 cut(s)	83
Cfr13I	GGNCC	2 cut(s)	116, 152
CsiI	ACCWGGT	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	143, 325
CviAII	CATG	1 cut(s)	350
CviJI	RGCY	8 cut(s)	53, 96, 118, 149, 153, 383, 389, 415
CviKI_1	RGCY	8 cut(s)	53, 96, 118, 149, 153, 383, 389, 415
CviQI	GTAC	2 cut(s)	143, 325
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	242
FaeI	CATG	1 cut(s)	353
FaiI	YATR	1 cut(s)	351
FatI	CATG	1 cut(s)	349
FauI	CCCGC	1 cut(s)	163
Fnu4HI	GCNGC	5 cut(s)	66, 94, 132, 250, 366
FokI	GGATG	3 cut(s)	55, 172, 386
Fsp4HI	GCNGC	5 cut(s)	66, 94, 132, 250, 366
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	5 cut(s)	66, 94, 132, 250, 366
HaeIII	GGCC	2 cut(s)	118, 153
HapII	CCGG	2 cut(s)	358, 395
HhaI	GCGC	1 cut(s)	83
Hin1II	CATG	1 cut(s)	353
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HinfI	GANTC	2 cut(s)	4, 235
HpaII	CCGG	2 cut(s)	358, 395
HphI	GGTGA	2 cut(s)	97, 238
Hpy188I	TCNGA	3 cut(s)	103, 331, 428
Hpy188III	TCNNGA	2 cut(s)	350, 371
HpyAV	CCTTC	2 cut(s)	106, 217
HpyCH4IV	ACGT	1 cut(s)	265
HpyCH4V	TGCA	3 cut(s)	258, 314, 377
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 155, 255, 374
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	1 cut(s)	265
Hsp92II	CATG	1 cut(s)	353
HspAI	GCGC	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	301
Lsp1109I	GCAGC	3 cut(s)	105, 118, 352
LweI	GCATC	4 cut(s)	77, 156, 194, 364
MabI	ACCWGGT	1 cut(s)	242
MaeII	ACGT	1 cut(s)	265
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MflI	RGATCY	1 cut(s)	301
MlyI	GAGTC	1 cut(s)	229
MnlI	CCTC	5 cut(s)	109, 199, 207, 211, 357
MseI	TTAA	1 cut(s)	210
MspI	CCGG	2 cut(s)	358, 395
MspR9I	CCNGG	2 cut(s)	244, 395
MvaI	CCWGG	1 cut(s)	244
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	4 cut(s)	131, 155, 255, 374
NciI	CCSGG	1 cut(s)	395
NdeII	GATC	1 cut(s)	301
NlaIII	CATG	1 cut(s)	353
NlaIV	GGNNCC	2 cut(s)	117, 154
PagI	TCATGA	1 cut(s)	349
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	5 cut(s)	67, 95, 133, 251, 367
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	242
PspN4I	GGNNCC	2 cut(s)	117, 154
PspPI	GGNCC	2 cut(s)	116, 152
PsuI	RGATCY	1 cut(s)	301
RsaI	GTAC	2 cut(s)	144, 326
RsaNI	GTAC	2 cut(s)	143, 325
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	5 cut(s)	66, 94, 132, 250, 366
Sau3AI	GATC	1 cut(s)	301
Sau96I	GGNCC	2 cut(s)	116, 152
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	2 cut(s)	244, 395
SetI	ASST	6 cut(s)	55, 151, 228, 248, 268, 417
SexAI	ACCWGGT	1 cut(s)	242
SfaNI	GCATC	4 cut(s)	77, 156, 194, 364
SfcI	CTRYAG	1 cut(s)	135
SsiI	CCGC	4 cut(s)	65, 83, 156, 249
StyD4I	CCNGG	2 cut(s)	242, 393
TaiI	ACGT	1 cut(s)	268
TatI	WGTACW	1 cut(s)	142
TauI	GCSGC	2 cut(s)	68, 252
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TseI	GCWGC	3 cut(s)	93, 131, 365
TspDTI	ATGAA	2 cut(s)	17, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.