Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000730

Physical Location & Seq

Genomic Coordinates Reverse (-)

704378 .. 708972

Gene Structure 4595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1007700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGAGCACAACGAGACAGGATGCCAAGCTCCTCCTGAAGCTCCCAAGCTTTGTGCCAACAACTGTGGCTTCTTCGGAAGTCCCGCAACCATGAATTTGTGTTCCAAGTGCCACAAGGACTTGGTGTTGAAGCAAGAACAAGCTAAAGTCGTTGCAGCATCCATTGATAGTGTGGTGAATGGCAGTCCCACTGAAAGTAGCAAGGGGCCTGTTGCTACTGCTGCTGTAGATGTACAAGCTGGTTCAGCAGATGTGATGCTTATCTCAACACAGGCTTCCTCTACTTCGTTGAACATTAAGAGTGAGGAGAAGGTGAAAGAGACTCCTACGAGGTGCGGCACTTGCAGGAAACGTGTTGGTCTGACAGGGTTCAGTTGCCGTTGTGGAGATATCTTTTGTGCAGTTCATCGGTACTCTGATAAACACAAGTGCCCCTATGATTACCGGACTGCTGCTCAGGATGCAATAGCCAAAGCCAACCCGGTTGTCAAGGCAGACAAGCTGGATAAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

172

Amino Acids

18.17

Weight (kDa)

8.47

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	17 - 39	1.8e-12	A20-like zinc finger
zf-AN1	PF01428	112 - 148	5.3e-09	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51200 AT1G51200 AT1G51200 AT1G51200
fragaria_vesca	FvH4_3g43080 FvH4_5g21790 FvH4_6g23060 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820
malus_domestica	MD02G1314500.v1.1 MD03G1024100.v1.1 MD07G1007700.v1.1 MD11G1029000.v1.1 MD11G1029100.v1.1 MD12G1065100.v1.1 MD14G1065100.v1.1
prunus_persica	Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.7G068900_v2.0.a1 Prupe.7G068900_v2.0.a1
pyrus_communis	pycom02g26370 pycom03g02080 pycom07g00630 pycom12g05690 pycom14g05300
rosa_chinensis	RchiOBHm_Chr1g0314981 RchiOBHm_Chr3g0480911 RchiOBHm_Chr5g0077181 RchiOBHm_Chr7g0209301
rosa_laevigata	RLG00000003146 RLG00000023442 RLG00000030750 RLG00000036671
rosa_multiflora	Rmu_sc0001701.1_g000022 Rmu_sc0004844.1_g000003 Rmu_sc0005168.1_g000016 Rmu_sc0013573.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004900 Rroxscaffold_6G00400890
rosa_rugosa	Rorug01G0004100 Rorug03G0187500 Rorug03G0187600 Rorug03G0187600 Rorug03G0187700 Rorug05G0452400 Rorug05G0452500 Rorug05G0452600 Rorug05G0452600 Rorug05G0452700 Rorug07G0111300
rosa_samantha	Rh1AG014500 Rh1BG006300 Rh1CG012600 Rh3AG238900 Rh3BG273100 Rh3CG268600 Rh3DG264600 Rh5AG507400 Rh5BG529000 Rh5CG553500 Rh5DG540800 Rh7DG252000
rosa_wichuraiana	Rw1G000700 Rw3G021380 Rw5G046990 Rw7G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	84, 336
AcsI	RAATTY	1 cut(s)	94
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	2 cut(s)	234, 413
AflIII	ACRYGT	1 cut(s)	352
AgsI	TTSAA	2 cut(s)	130, 292
AluBI	AGCT	6 cut(s)	29, 41, 49, 143, 239, 502
AluI	AGCT	6 cut(s)	29, 41, 49, 143, 239, 502
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	2 cut(s)	8, 314
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	3 cut(s)	155, 221, 452
ApoI	RAATTY	1 cut(s)	94
AspS9I	GGNCC	1 cut(s)	206
AsuC2I	CCSGG	1 cut(s)	482
AsuHPI	GGTGA	2 cut(s)	187, 325
BaeGI	GKGCMC	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	3 cut(s)	167, 208, 439
BceAI	ACGGC	1 cut(s)	363
BcnI	CCSGG	1 cut(s)	482
BcoDI	GTCTC	2 cut(s)	8, 314
BfmI	CTRYAG	1 cut(s)	225
BisI	GCNGC	4 cut(s)	156, 222, 337, 453
BlsI	GCNGC	4 cut(s)	157, 223, 338, 454
Bme1390I	CCNGG	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	1 cut(s)	482
BmsI	GCATC	4 cut(s)	11, 167, 246, 451
Bpu10I	CCTNAGC	1 cut(s)	456
BpuMI	CCSGG	1 cut(s)	482
BsaBI	GATNNNNATC	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	444
Bse8I	GATNNNNATC	1 cut(s)	260
BseGI	GGATG	3 cut(s)	26, 158, 466
BseJI	GATNNNNATC	1 cut(s)	260
BseMII	CTCAG	1 cut(s)	470
BseRI	GAGGAG	2 cut(s)	21, 320
BseSI	GKGCMC	1 cut(s)	434
BseXI	GCAGC	3 cut(s)	167, 208, 439
BsgI	GTGCAG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	445, 482
BslFI	GGGAC	2 cut(s)	66, 171
BsmAI	GTCTC	2 cut(s)	8, 314
BsmFI	GGGAC	2 cut(s)	66, 171
BsnI	GGCC	1 cut(s)	208
Bsp1286I	GDGCHC	2 cut(s)	9, 434
Bsp1407I	TGTACA	1 cut(s)	232
BspACI	CCGC	2 cut(s)	84, 336
BspANI	GGCC	1 cut(s)	208
BspCNI	CTCAG	1 cut(s)	469
BspLI	GGNNCC	1 cut(s)	207
BsrGI	TGTACA	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	65
BstAUI	TGTACA	1 cut(s)	232
BstDEI	CTNAG	1 cut(s)	456
BstF5I	GGATG	3 cut(s)	26, 158, 466
BstMAI	GTCTC	2 cut(s)	8, 314
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 245, 342, 461
BstSCI	CCNGG	1 cut(s)	480
BstSFI	CTRYAG	1 cut(s)	225
BstSLI	GKGCMC	1 cut(s)	434
BstV1I	GCAGC	3 cut(s)	167, 208, 439
BsuRI	GGCC	1 cut(s)	208
BtsCI	GGATG	3 cut(s)	26, 158, 466
BtsIMutI	CAGTG	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	206
Csp6I	GTAC	2 cut(s)	233, 412
CspCI	CAANNNNNGTGG	2 cut(s)	46, 81
CviAII	CATG	1 cut(s)	91
CviQI	GTAC	2 cut(s)	233, 412
DdeI	CTNAG	1 cut(s)	456
Eco32I	GATATC	1 cut(s)	391
Eco57I	CTGAAG	1 cut(s)	57
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRV	GATATC	1 cut(s)	391
FaeI	CATG	1 cut(s)	94
FaiI	YATR	2 cut(s)	92, 438
FaqI	GGGAC	2 cut(s)	66, 171
FatI	CATG	1 cut(s)	90
FauI	CCCGC	1 cut(s)	91
Fnu4HI	GCNGC	4 cut(s)	156, 222, 337, 453
FokI	GGATG	3 cut(s)	33, 145, 473
Fsp4HI	GCNGC	4 cut(s)	156, 222, 337, 453
GluI	GCNGC	4 cut(s)	156, 222, 337, 453
HaeIII	GGCC	1 cut(s)	208
HapII	CCGG	2 cut(s)	445, 482
Hin1II	CATG	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	1 cut(s)	322
HpaII	CCGG	2 cut(s)	445, 482
HphI	GGTGA	2 cut(s)	187, 325
Hpy188I	TCNGA	4 cut(s)	77, 363, 418, 515
Hpy188III	TCNNGA	2 cut(s)	35, 458
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	4 cut(s)	155, 345, 401, 464
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 245, 342, 461
HpyF3I	CTNAG	1 cut(s)	456
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	1 cut(s)	94
LmnI	GCTCC	3 cut(s)	4, 34, 46
Lsp1109I	GCAGC	3 cut(s)	167, 208, 439
LweI	GCATC	4 cut(s)	11, 167, 246, 451
MaeII	ACGT	1 cut(s)	352
MboII	GAAGA	1 cut(s)	64
MhlI	GDGCHC	2 cut(s)	9, 434
MluCI	AATT	1 cut(s)	94
MlyI	GAGTC	1 cut(s)	316
MnlI	CCTC	4 cut(s)	42, 289, 298, 324
MseI	TTAA	1 cut(s)	297
MspI	CCGG	2 cut(s)	445, 482
MspR9I	CCNGG	1 cut(s)	482
MwoI	GCNNNNNNNGC	4 cut(s)	221, 245, 342, 461
NciI	CCSGG	1 cut(s)	482
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	1 cut(s)	207
PkrI	GCNGC	4 cut(s)	157, 223, 338, 454
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	206
RsaI	GTAC	2 cut(s)	234, 413
RsaNI	GTAC	2 cut(s)	233, 412
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	4 cut(s)	156, 222, 337, 453
Sau96I	GGNCC	1 cut(s)	206
SchI	GAGTC	1 cut(s)	316
ScrFI	CCNGG	1 cut(s)	482
SduI	GDGCHC	2 cut(s)	9, 434
SetI	ASST	9 cut(s)	31, 43, 51, 145, 241, 315, 335, 355, 504
SfaNI	GCATC	4 cut(s)	11, 167, 246, 451
SfcI	CTRYAG	1 cut(s)	225
Sse9I	AATT	1 cut(s)	94
SsiI	CCGC	2 cut(s)	84, 336
StyD4I	CCNGG	1 cut(s)	480
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	1 cut(s)	355
TasI	AATT	1 cut(s)	94
TatI	WGTACW	1 cut(s)	232
TauI	GCSGC	1 cut(s)	339
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	3 cut(s)	155, 221, 452
TspDTI	ATGAA	2 cut(s)	107, 395
TspRI	CASTG	1 cut(s)	196
XapI	RAATTY	1 cut(s)	94
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.