Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0000730

Physical Location & Seq

Genomic Coordinates Reverse (-)

5075959 .. 5076393

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g05300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAACATGTGTTCCAAGTGTTACAAGGACACACTCTTAAAGCAGGACCAAGCTAATTTGGCTGCATCATCCATTGACAGCATTGTGAATGGCGGCGGCAGCAGCAGCAGCATCATCATTGACCCAGTTGTCGCAAGTGTTGTCGATGTGCAAGCTGTACAAGTGGGGACCAGTGTTGTTTCAACAGAACCATCCAGTGACTCATCCTCAAGCATGAAAATTGAGGTGAAAGAAAAAAAGGGACCAAGCAAATGCACTACTTGCCGAAAGCGCGTTGGTTTAACTGGGTTCAATTGCAAATGTGGAAACACCTTCTGTGCGAGCCATCGTTATTCCGACAAACATGACTGTCCTTTTGATTATAGGACTGCTGGTCAGGATGCTATTGCGAAAGCCAATCCTATTGTGAAGGCAGACAAACTTGATAAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

145

Amino Acids

15.29

Weight (kDa)

8.61

Isoelectric Point (pI)

31.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-AN1	PF01428	85 - 121	3.7e-10	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51200 AT1G51200 AT1G51200 AT1G51200
fragaria_vesca	FvH4_3g43080 FvH4_5g21790 FvH4_6g23060 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820
malus_domestica	MD02G1314500.v1.1 MD03G1024100.v1.1 MD07G1007700.v1.1 MD11G1029000.v1.1 MD11G1029100.v1.1 MD12G1065100.v1.1 MD14G1065100.v1.1
prunus_persica	Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.7G068900_v2.0.a1 Prupe.7G068900_v2.0.a1
pyrus_communis	pycom02g26370 pycom03g02080 pycom07g00630 pycom12g05690 pycom14g05300
rosa_chinensis	RchiOBHm_Chr1g0314981 RchiOBHm_Chr3g0480911 RchiOBHm_Chr5g0077181 RchiOBHm_Chr7g0209301
rosa_laevigata	RLG00000003146 RLG00000023442 RLG00000030750 RLG00000036671
rosa_multiflora	Rmu_sc0001701.1_g000022 Rmu_sc0004844.1_g000003 Rmu_sc0005168.1_g000016 Rmu_sc0013573.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004900 Rroxscaffold_6G00400890
rosa_rugosa	Rorug01G0004100 Rorug03G0187500 Rorug03G0187600 Rorug03G0187600 Rorug03G0187700 Rorug05G0452400 Rorug05G0452500 Rorug05G0452600 Rorug05G0452600 Rorug05G0452700 Rorug07G0111300
rosa_samantha	Rh1AG014500 Rh1BG006300 Rh1CG012600 Rh3AG238900 Rh3BG273100 Rh3CG268600 Rh3DG264600 Rh5AG507400 Rh5BG529000 Rh5CG553500 Rh5DG540800 Rh7DG252000
rosa_wichuraiana	Rw1G000700 Rw3G021380 Rw5G046990 Rw7G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AccII	CGCG	1 cut(s)	273
AciI	CCGC	2 cut(s)	93, 96
AfaI	GTAC	1 cut(s)	159
AflIII	ACRYGT	1 cut(s)	6
AgsI	TTSAA	2 cut(s)	183, 292
AhdI	GACNNNNNGTC	1 cut(s)	372
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	2 cut(s)	53, 155
AluI	AGCT	2 cut(s)	53, 155
ApeKI	GCWGC	5 cut(s)	62, 99, 102, 105, 108
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	3 cut(s)	46, 168, 242
AsuHPI	GGTGA	1 cut(s)	238
AvaII	GGWCC	3 cut(s)	46, 168, 242
BbvI	GCAGC	5 cut(s)	49, 111, 114, 117, 120
BccI	CCATC	2 cut(s)	199, 333
BfaI	CTAG	1 cut(s)	433
BisI	GCNGC	7 cut(s)	63, 94, 97, 100, 103, 106, 109
BlsI	GCNGC	7 cut(s)	64, 95, 98, 101, 104, 107, 110
Bme18I	GGWCC	3 cut(s)	46, 168, 242
BmeRI	GACNNNNNGTC	1 cut(s)	372
BmgT120I	GGNCC	3 cut(s)	46, 168, 242
BmiI	GGNNCC	2 cut(s)	169, 243
BmrI	ACTGGG	2 cut(s)	119, 294
BmsI	GCATC	3 cut(s)	74, 120, 370
BmuI	ACTGGG	2 cut(s)	119, 294
BpuEI	CTTGAG	1 cut(s)	193
Bse1I	ACTGG	4 cut(s)	125, 171, 195, 289
BseGI	GGATG	4 cut(s)	68, 191, 203, 385
BseNI	ACTGG	4 cut(s)	125, 171, 195, 289
BseXI	GCAGC	5 cut(s)	49, 111, 114, 117, 120
Bsh1236I	CGCG	1 cut(s)	273
BslFI	GGGAC	2 cut(s)	181, 255
BsmFI	GGGAC	2 cut(s)	181, 255
Bsp1407I	TGTACA	1 cut(s)	157
BspACI	CCGC	2 cut(s)	93, 96
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	2 cut(s)	169, 243
BsrGI	TGTACA	1 cut(s)	157
BsrI	ACTGG	4 cut(s)	125, 171, 195, 289
Bst4CI	ACNGT	1 cut(s)	350
BstAPI	GCANNNNNTGC	1 cut(s)	261
BstAUI	TGTACA	1 cut(s)	157
BstC8I	GCNNGC	2 cut(s)	153, 322
BstF5I	GGATG	4 cut(s)	68, 191, 203, 385
BstFNI	CGCG	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	7 cut(s)	59, 99, 102, 105, 108, 261, 270
BstNSI	RCATGY	1 cut(s)	10
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	5 cut(s)	49, 111, 114, 117, 120
BtsCI	GGATG	4 cut(s)	68, 191, 203, 385
BtsIMutI	CAGTG	2 cut(s)	178, 202
Cac8I	GCNNGC	2 cut(s)	153, 322
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	3 cut(s)	46, 168, 242
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	3 cut(s)	7, 214, 344
CviJI	RGCY	5 cut(s)	53, 62, 155, 324, 395
CviKI_1	RGCY	5 cut(s)	53, 62, 155, 324, 395
CviQI	GTAC	1 cut(s)	158
DrdI	GACNNNNNNGTC	1 cut(s)	128
DriI	GACNNNNNGTC	1 cut(s)	372
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eam1105I	GACNNNNNGTC	1 cut(s)	372
Eco47I	GGWCC	3 cut(s)	46, 168, 242
FaeI	CATG	3 cut(s)	10, 217, 347
FaiI	YATR	4 cut(s)	8, 215, 345, 363
FaqI	GGGAC	2 cut(s)	181, 255
FatI	CATG	3 cut(s)	6, 213, 343
Fnu4HI	GCNGC	7 cut(s)	63, 94, 97, 100, 103, 106, 109
FokI	GGATG	4 cut(s)	55, 178, 190, 392
Fsp4HI	GCNGC	7 cut(s)	63, 94, 97, 100, 103, 106, 109
FspBI	CTAG	1 cut(s)	433
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	7 cut(s)	63, 94, 97, 100, 103, 106, 109
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	3 cut(s)	10, 217, 347
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HinfI	GANTC	1 cut(s)	200
HphI	GGTGA	1 cut(s)	238
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	1 cut(s)	377
HpyAV	CCTTC	2 cut(s)	322, 403
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4V	TGCA	4 cut(s)	65, 151, 255, 297
HpyF10VI	GCNNNNNNNGC	7 cut(s)	59, 99, 102, 105, 108, 261, 270
Hsp92II	CATG	3 cut(s)	10, 217, 347
HspAI	GCGC	1 cut(s)	271
LpnPI	CCDG	7 cut(s)	29, 138, 184, 208, 270, 357, 362
Lsp1109I	GCAGC	5 cut(s)	49, 111, 114, 117, 120
LweI	GCATC	3 cut(s)	74, 120, 370
MaeI	CTAG	1 cut(s)	433
MaeIII	GTNAC	2 cut(s)	20, 197
MfeI	CAATTG	1 cut(s)	292
MluCI	AATT	3 cut(s)	55, 219, 292
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	2 cut(s)	217, 217
MseI	TTAA	2 cut(s)	38, 281
MunI	CAATTG	1 cut(s)	292
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	7 cut(s)	59, 99, 102, 105, 108, 261, 270
NlaIII	CATG	3 cut(s)	10, 217, 347
NlaIV	GGNNCC	2 cut(s)	169, 243
NmuCI	GTSAC	1 cut(s)	197
NspI	RCATGY	1 cut(s)	10
PciI	ACATGT	1 cut(s)	6
PkrI	GCNGC	7 cut(s)	64, 95, 98, 101, 104, 107, 110
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
PscI	ACATGT	1 cut(s)	6
PspN4I	GGNNCC	2 cut(s)	169, 243
PspPI	GGNCC	3 cut(s)	46, 168, 242
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
SaqAI	TTAA	2 cut(s)	38, 281
SatI	GCNGC	7 cut(s)	63, 94, 97, 100, 103, 106, 109
Sau96I	GGNCC	3 cut(s)	46, 168, 242
SchI	GAGTC	1 cut(s)	194
SetI	ASST	4 cut(s)	55, 157, 228, 314
SfaNI	GCATC	3 cut(s)	74, 120, 370
SinI	GGWCC	3 cut(s)	46, 168, 242
SmlI	CTYRAG	1 cut(s)	208
SmoI	CTYRAG	1 cut(s)	208
Sse9I	AATT	3 cut(s)	55, 219, 292
SsiI	CCGC	2 cut(s)	93, 96
SspMI	CTAG	1 cut(s)	433
TaaI	ACNGT	1 cut(s)	350
TaqI	TCGA	1 cut(s)	144
TasI	AATT	3 cut(s)	55, 219, 292
TatI	WGTACW	1 cut(s)	157
TauI	GCSGC	2 cut(s)	96, 99
Tru1I	TTAA	2 cut(s)	38, 281
Tru9I	TTAA	2 cut(s)	38, 281
TscAI	CASTG	2 cut(s)	178, 202
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	5 cut(s)	62, 99, 102, 105, 108
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	2 cut(s)	17, 230
TspRI	CASTG	2 cut(s)	178, 202
VpaK11BI	GGWCC	3 cut(s)	46, 168, 242
XceI	RCATGY	1 cut(s)	10
XspI	CTAG	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.