Rh1BG006300

Zinc finger A20 and AN1 domain-containing stress-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000730
Physical Location & Seq
Reverse (-)
819369 .. 819875
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG006300.1

Sequence Viewer

Length: 507 bp
ATGGAGCACAACAAGATAGGATGCCAAGCACTTCCAGAAGCTCCCAAACTTTGTATCAATAACTGTGGATTCTTTGGAAGTGCAGCAACCATGAACTTGTGTTCCAAATGCCACAAGGACTTGGTATTGAAGCAAGAACAAGCCAAAGTCTCTGCAGTGTCCATTGAAAGTGCTGTGAATGCCAATCCCAATAACTGGGGAAAGGAGCCTGCTGTGACTCTAGATGCACAAGCTAGTTCAGCATATTTGCCTCTTATCTCAGCTGAGGCATCCGGTACTCCGCCCCCAAACAATGAGGATAAGGTGAAAGCGACTCCAACCCGGTGCAACACTTGCAGGAAACGTGTTGGTCTCACTGGGTTCAATTGCCGCTGTGGACATATCTTCTGTGCAGTTCATCGCTACTCTGATAAACATGACTGTCCATATGACTATCAAGCTGTTGTGCGGGATGCTATAGCAAAAGCCAACCCTGTTGTCAAGGCTGAAAAGCTGGATAAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

168

Amino Acids

18.17

Weight (kDa)

8.63

Isoelectric Point (pI)

31.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-A20 PF01754 17 - 39 1.9e-11 A20-like zinc finger
zf-AN1 PF01428 109 - 146 3.2e-09 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 195
AciI CCGC 3 cut(s) 281, 370, 448
AfaI GTAC 1 cut(s) 277
AfiI CCNNNNNNNGG 1 cut(s) 195
AflIII ACRYGT 1 cut(s) 343
AgsI TTSAA 3 cut(s) 130, 167, 364
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 5 cut(s) 41, 233, 263, 440, 493
AluI AGCT 5 cut(s) 41, 233, 263, 440, 493
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 2 cut(s) 154, 356
ApeKI GCWGC 1 cut(s) 83
AsuC2I CCSGG 1 cut(s) 322
AsuHPI GGTGA 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 9
BbvCI CCTCAGC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 95
BcnI CCSGG 1 cut(s) 322
BcoDI GTCTC 2 cut(s) 154, 356
BfaI CTAG 2 cut(s) 221, 234
BfmI CTRYAG 2 cut(s) 153, 456
BisI GCNGC 2 cut(s) 84, 370
BlsI GCNGC 2 cut(s) 85, 371
Bme1390I CCNGG 1 cut(s) 322
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 322
BmrI ACTGGG 2 cut(s) 205, 366
BmsI GCATC 4 cut(s) 11, 214, 278, 442
BmuI ACTGGG 2 cut(s) 205, 366
Bpu10I CCTNAGC 1 cut(s) 264
BpuMI CCSGG 1 cut(s) 322
BsaI GGTCTC 1 cut(s) 356
BsaWI WCCGGW 1 cut(s) 272
Bsc4I CCNNNNNNNGG 1 cut(s) 195
Bse1I ACTGG 2 cut(s) 200, 361
BseGI GGATG 3 cut(s) 26, 269, 457
BseLI CCNNNNNNNGG 1 cut(s) 195
BseMII CTCAG 2 cut(s) 255, 273
BseNI ACTGG 2 cut(s) 200, 361
BseXI GCAGC 1 cut(s) 95
BsgI GTGCAG 2 cut(s) 102, 411
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 2 cut(s) 273, 322
BslI CCNNNNNNNGG 1 cut(s) 195
BsmAI GTCTC 2 cut(s) 154, 356
BsmI GAATGC 1 cut(s) 184
Bso31I GGTCTC 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 9
BspACI CCGC 3 cut(s) 281, 370, 448
BspCNI CTCAG 2 cut(s) 256, 272
BspLI GGNNCC 1 cut(s) 207
BspMAI CTGCAG 1 cut(s) 157
BspTNI GGTCTC 1 cut(s) 356
BsrI ACTGG 2 cut(s) 200, 361
Bst4CI ACNGT 2 cut(s) 65, 422
BstAPI GCANNNNNTGC 1 cut(s) 333
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 2 cut(s) 259, 264
BstF5I GGATG 3 cut(s) 26, 269, 457
BstMAI GTCTC 2 cut(s) 154, 356
BstMWI GCNNNNNNNGC 3 cut(s) 179, 239, 333
BstSCI CCNGG 1 cut(s) 320
BstSFI CTRYAG 2 cut(s) 153, 456
BstV1I GCAGC 1 cut(s) 95
BtgZI GCGATG 1 cut(s) 383
BtsCI GGATG 3 cut(s) 26, 269, 457
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 162, 354
Cac8I GCNNGC 1 cut(s) 210
Csp6I GTAC 1 cut(s) 276
CspCI CAANNNNNGTGG 2 cut(s) 46, 81
CviAII CATG 2 cut(s) 91, 416
CviJI RGCY 9 cut(s) 41, 143, 208, 233, 263, 440, 467, 485, 493
CviKI_1 RGCY 9 cut(s) 41, 143, 208, 233, 263, 440, 467, 485, 493
CviQI GTAC 1 cut(s) 276
DdeI CTNAG 2 cut(s) 259, 264
EciI GGCGGA 1 cut(s) 270
Eco31I GGTCTC 1 cut(s) 356
FaeI CATG 2 cut(s) 94, 419
FaiI YATR 8 cut(s) 92, 244, 381, 417, 427, 429, 458, 505
FatI CATG 2 cut(s) 90, 415
FauI CCCGC 1 cut(s) 441
FauNDI CATATG 1 cut(s) 427
Fnu4HI GCNGC 2 cut(s) 84, 370
FokI GGATG 3 cut(s) 33, 256, 464
Fsp4HI GCNGC 2 cut(s) 84, 370
FspBI CTAG 2 cut(s) 221, 234
GluI GCNGC 2 cut(s) 84, 370
HapII CCGG 2 cut(s) 273, 322
Hin1II CATG 2 cut(s) 94, 419
HinfI GANTC 3 cut(s) 69, 217, 313
HpaII CCGG 2 cut(s) 273, 322
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 1 cut(s) 409
Hpy188III TCNNGA 2 cut(s) 35, 221
Hpy8I GTNNAC 1 cut(s) 377
HpyCH4III ACNGT 2 cut(s) 65, 422
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 6 cut(s) 83, 155, 227, 327, 336, 392
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 239, 333
HpyF3I CTNAG 2 cut(s) 259, 264
HpySE526I ACGT 1 cut(s) 343
Hsp92II CATG 2 cut(s) 94, 419
LmnI GCTCC 3 cut(s) 4, 46, 205
LpnPI CCDG 9 cut(s) 48, 181, 222, 286, 322, 335, 342, 479, 486
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 4 cut(s) 11, 214, 278, 442
MaeI CTAG 2 cut(s) 221, 234
MaeII ACGT 1 cut(s) 343
MaeIII GTNAC 1 cut(s) 214
MboII GAAGA 1 cut(s) 376
MfeI CAATTG 1 cut(s) 364
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 1 cut(s) 364
MlyI GAGTC 2 cut(s) 211, 307
MmeI TCCRAC 1 cut(s) 341
MnlI CCTC 3 cut(s) 259, 261, 289
MspA1I CMGCKG 2 cut(s) 263, 372
MspI CCGG 2 cut(s) 273, 322
MspR9I CCNGG 1 cut(s) 322
MunI CAATTG 1 cut(s) 364
Mva1269I GAATGC 1 cut(s) 184
MwoI GCNNNNNNNGC 3 cut(s) 179, 239, 333
NciI CCSGG 1 cut(s) 322
NdeI CATATG 1 cut(s) 427
NlaIII CATG 2 cut(s) 94, 419
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 1 cut(s) 214
PctI GAATGC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 69
PflMI CCANNNNNTGG 1 cut(s) 195
PkrI GCNGC 2 cut(s) 85, 371
PleI GAGTC 2 cut(s) 211, 307
PpsI GAGTC 2 cut(s) 211, 307
PspN4I GGNNCC 1 cut(s) 207
PstI CTGCAG 1 cut(s) 157
PvuII CAGCTG 1 cut(s) 263
RsaI GTAC 1 cut(s) 277
RsaNI GTAC 1 cut(s) 276
SatI GCNGC 2 cut(s) 84, 370
SchI GAGTC 2 cut(s) 211, 307
ScrFI CCNGG 1 cut(s) 322
SduI GDGCHC 1 cut(s) 9
SetI ASST 7 cut(s) 43, 235, 265, 306, 346, 442, 495
SfaNI GCATC 4 cut(s) 11, 214, 278, 442
SfcI CTRYAG 2 cut(s) 153, 456
Sse9I AATT 1 cut(s) 364
SsiI CCGC 3 cut(s) 281, 370, 448
SspMI CTAG 2 cut(s) 221, 234
StyD4I CCNGG 1 cut(s) 320
TaaI ACNGT 2 cut(s) 65, 422
TaiI ACGT 1 cut(s) 346
TasI AATT 1 cut(s) 364
TauI GCSGC 1 cut(s) 372
TfiI GAWTC 1 cut(s) 69
TscAI CASTG 2 cut(s) 162, 361
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 2 cut(s) 107, 386
TspRI CASTG 2 cut(s) 162, 361
Van91I CCANNNNNTGG 1 cut(s) 195
XbaI TCTAGA 1 cut(s) 220
XspI CTAG 2 cut(s) 221, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.