Rorug01G0004100

Zinc finger A20 and AN1 domain-containing stress-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000730
Physical Location & Seq
Forward (+)
869347 .. 869980
634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0004100.1

Sequence Viewer

Length: 363 bp
ATGGAACCAGAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCATTACAGCTGGAGCGGTACTAGGTGGGCTCCTACTACAGATCAGATAAGAATCCTCAAGGAGCTTTACTACGACAAGGGAGTTAAGTCCCCAACTGTAGAGCAGGAGATTGAAACCCTTCTACTGTTCCCCATGCACGGTGAGGACATCCTTGGCAACATGAAGACTACTTCCGAGGGAGGTAGCGGCTATGGCTACTACTCCGGTGGCTCGGGCGGCTACAACGGCGGCTCTCACATTTCCCTTGAGCTCAGCCTCAACTCAGGAGCTGCTGACTTGGATATAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

120

Amino Acids

12.81

Weight (kDa)

4.53

Isoelectric Point (pI)

61.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 87
AciI CCGC 4 cut(s) 87, 258, 288, 300
AfaI GTAC 1 cut(s) 91
AfiI CCNNNNNNNGG 1 cut(s) 209
AgsI TTSAA 1 cut(s) 185
AluBI AGCT 4 cut(s) 81, 136, 322, 341
AluI AGCT 4 cut(s) 81, 136, 322, 341
Alw21I GWGCWC 1 cut(s) 324
AlwNI CAGNNNCTG 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 283
ApeKI GCWGC 2 cut(s) 50, 341
Asp700I GAANNNNTTC 1 cut(s) 189
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 283
BanII GRGCYC 2 cut(s) 103, 324
BbsI GAAGAC 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 62, 328
BccI CCATC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 313
BcnI CCSGG 1 cut(s) 55
BfaI CTAG 1 cut(s) 93
BfmI CTRYAG 2 cut(s) 108, 168
BisI GCNGC 5 cut(s) 51, 259, 289, 301, 342
BlpI GCTNAGC 1 cut(s) 323
BlsI GCNGC 5 cut(s) 52, 260, 290, 302, 343
Bme1390I CCNGG 1 cut(s) 55
BmeT110I CYCGRG 1 cut(s) 283
BmiI GGNNCC 2 cut(s) 6, 102
BmrFI CCNGG 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 242
BpmI CTGGAG 1 cut(s) 103
Bpu1102I GCTNAGC 1 cut(s) 323
BpuEI CTTGAG 2 cut(s) 113, 338
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 122
BsaJI CCNNGG 3 cut(s) 27, 223, 246
BsaWI WCCGGW 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse8I GATNNNNATC 1 cut(s) 122
BseDI CCNNGG 3 cut(s) 27, 223, 246
BseGI GGATG 2 cut(s) 37, 219
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 1 cut(s) 209
BseMII CTCAG 2 cut(s) 337, 348
BseXI GCAGC 2 cut(s) 62, 328
BseYI CCCAGC 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 324
BsiHKCI CYCGRG 1 cut(s) 283
BsiSI CCGG 2 cut(s) 54, 276
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 209
BsmFI GGGAC 1 cut(s) 145
BsoBI CYCGRG 1 cut(s) 283
Bsp1286I GDGCHC 2 cut(s) 103, 324
Bsp143I GATC 1 cut(s) 112
Bsp1720I GCTNAGC 1 cut(s) 323
BspACI CCGC 4 cut(s) 87, 258, 288, 300
BspCNI CTCAG 2 cut(s) 336, 347
BspLI GGNNCC 2 cut(s) 6, 102
BsrBI CCGCTC 1 cut(s) 87
BssECI CCNNGG 3 cut(s) 27, 223, 246
BssMI GATC 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 223
Bst4CI ACNGT 3 cut(s) 169, 198, 212
BstDEI CTNAG 2 cut(s) 323, 334
BstF5I GGATG 2 cut(s) 37, 219
BstKTI GATC 1 cut(s) 115
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 3 cut(s) 264, 288, 297
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 2 cut(s) 108, 168
BstV1I GCAGC 2 cut(s) 62, 328
BstV2I GAAGAC 1 cut(s) 242
BtsCI GGATG 2 cut(s) 37, 219
CaiI CAGNNNCTG 1 cut(s) 341
Csp6I GTAC 1 cut(s) 90
CviAII CATG 3 cut(s) 70, 205, 232
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 2 cut(s) 323, 334
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
Ecl136II GAGCTC 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 223
Eco24I GRGCYC 2 cut(s) 103, 324
Eco53kI GAGCTC 1 cut(s) 322
Eco88I CYCGRG 1 cut(s) 283
EcoICRI GAGCTC 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 223
EcoT22I ATGCAT 1 cut(s) 75
EcoT38I GRGCYC 2 cut(s) 103, 324
ErhI CCWWGG 1 cut(s) 223
FaeI CATG 3 cut(s) 73, 208, 235
FaiI YATR 5 cut(s) 71, 206, 233, 264, 356
FaqI GGGAC 1 cut(s) 145
FatI CATG 3 cut(s) 69, 204, 231
Fnu4HI GCNGC 5 cut(s) 51, 259, 289, 301, 342
FokI GGATG 2 cut(s) 44, 206
FriOI GRGCYC 2 cut(s) 103, 324
Fsp4HI GCNGC 5 cut(s) 51, 259, 289, 301, 342
FspBI CTAG 1 cut(s) 93
GluI GCNGC 5 cut(s) 51, 259, 289, 301, 342
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 103
HapII CCGG 2 cut(s) 54, 276
Hin1II CATG 3 cut(s) 73, 208, 235
HinfI GANTC 1 cut(s) 123
HpaII CCGG 2 cut(s) 54, 276
HphI GGTGA 1 cut(s) 224
Hpy188I TCNGA 2 cut(s) 117, 247
Hpy188III TCNNGA 1 cut(s) 336
HpyAV CCTTC 1 cut(s) 200
HpyCH4III ACNGT 3 cut(s) 169, 198, 212
HpyCH4V TGCA 2 cut(s) 73, 208
HpyF10VI GCNNNNNNNGC 3 cut(s) 264, 288, 297
HpyF3I CTNAG 2 cut(s) 323, 334
Hsp92II CATG 3 cut(s) 73, 208, 235
Kzo9I GATC 1 cut(s) 112
LmnI GCTCC 4 cut(s) 84, 106, 133, 338
LpnPI CCDG 7 cut(s) 21, 29, 67, 67, 161, 289, 321
Lsp1109I GCAGC 2 cut(s) 62, 328
MaeI CTAG 1 cut(s) 93
MalI GATC 1 cut(s) 114
MbiI CCGCTC 1 cut(s) 87
MboI GATC 1 cut(s) 112
MboII GAAGA 1 cut(s) 247
MhlI GDGCHC 2 cut(s) 103, 324
MnlI CCTC 7 cut(s) 22, 29, 137, 208, 241, 245, 338
Mph1103I ATGCAT 1 cut(s) 75
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 81
MspI CCGG 2 cut(s) 54, 276
MspR9I CCNGG 1 cut(s) 55
MwoI GCNNNNNNNGC 3 cut(s) 264, 288, 297
NciI CCSGG 1 cut(s) 55
NdeII GATC 1 cut(s) 112
NlaIII CATG 3 cut(s) 73, 208, 235
NlaIV GGNNCC 2 cut(s) 6, 102
NsiI ATGCAT 1 cut(s) 75
NspI RCATGY 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 123
PkrI GCNGC 5 cut(s) 52, 260, 290, 302, 343
Psp124BI GAGCTC 1 cut(s) 324
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 2 cut(s) 6, 102
PstNI CAGNNNCTG 1 cut(s) 341
PvuII CAGCTG 1 cut(s) 81
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SacI GAGCTC 1 cut(s) 324
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 5 cut(s) 51, 259, 289, 301, 342
Sau3AI GATC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 2 cut(s) 103, 324
SetI ASST 6 cut(s) 83, 98, 138, 256, 324, 343
SfcI CTRYAG 2 cut(s) 108, 168
SmlI CTYRAG 2 cut(s) 128, 317
SmoI CTYRAG 2 cut(s) 128, 317
SsiI CCGC 4 cut(s) 87, 258, 288, 300
SspMI CTAG 1 cut(s) 93
SstI GAGCTC 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 53
StyI CCWWGG 1 cut(s) 223
TaaI ACNGT 3 cut(s) 169, 198, 212
TauI GCSGC 3 cut(s) 261, 291, 303
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseI GCWGC 2 cut(s) 50, 341
TspDTI ATGAA 1 cut(s) 248
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 1 cut(s) 93
Zsp2I ATGCAT 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.