Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004844.1

Orthogroup ID

OG0000730

Physical Location & Seq

Genomic Coordinates Reverse (-)

6336 .. 8096

Gene Structure 1761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004844.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atggtccttattaaatttccaagagaggagcgtcgcgcggatagaaaaacagagaagcacgtctctcctcttctctctcctctcgacgatctcaaaaaatctgctgctaggggggccctcttgtccgatgcgattctgagctcgggggatcggtttcggaggttttatttcaagaatcttgatttacagggagagttgaaaaaatggaccacgaggacactggatgtcaagctgcccctgaaggacttgatgatgaaacaggagcaggctaagcttgctgcatcatcaattggaagtattgtcaatggaacctcaagcagccacgggaaggaacctgttgctgctaatccagtggacccaaaaactatctctatgaactcgaccattacatttaggtcagagtacgactctccttccccctttgcttttgggtcatcggagactgctgtggcaaagcctggcccagaatcatttacttttgggtctgggcaaaatggtgagccgaagccagagggcccaaagcgctgcactacctgcaacaagcgggtgggtttaacaggattcaattgtcgctgtggtgaccttttctgtgcagtacatcgttattcagacaaacatgactgcccctatgattatcgtactgctggtcgtgatgccattgctaaagccaatcctgttgtcaaagctgagaagcttgataaaatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

235

Amino Acids

25.89

Weight (kDa)

9.4

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000730)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51200 AT1G51200 AT1G51200 AT1G51200
fragaria_vesca	FvH4_3g43080 FvH4_5g21790 FvH4_6g23060 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820 FvH4_7g00820
malus_domestica	MD02G1314500.v1.1 MD03G1024100.v1.1 MD07G1007700.v1.1 MD11G1029000.v1.1 MD11G1029100.v1.1 MD12G1065100.v1.1 MD14G1065100.v1.1
prunus_persica	Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.2G010400_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.6G023300_v2.0.a1 Prupe.7G068900_v2.0.a1 Prupe.7G068900_v2.0.a1
pyrus_communis	pycom02g26370 pycom03g02080 pycom07g00630 pycom12g05690 pycom14g05300
rosa_chinensis	RchiOBHm_Chr1g0314981 RchiOBHm_Chr3g0480911 RchiOBHm_Chr5g0077181 RchiOBHm_Chr7g0209301
rosa_laevigata	RLG00000003146 RLG00000023442 RLG00000030750 RLG00000036671
rosa_multiflora	Rmu_sc0001701.1_g000022 Rmu_sc0004844.1_g000003 Rmu_sc0005168.1_g000016 Rmu_sc0013573.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004900 Rroxscaffold_6G00400890
rosa_rugosa	Rorug01G0004100 Rorug03G0187500 Rorug03G0187600 Rorug03G0187600 Rorug03G0187700 Rorug05G0452400 Rorug05G0452500 Rorug05G0452600 Rorug05G0452600 Rorug05G0452700 Rorug07G0111300
rosa_samantha	Rh1AG014500 Rh1BG006300 Rh1CG012600 Rh3AG238900 Rh3BG273100 Rh3CG268600 Rh3DG264600 Rh5AG507400 Rh5BG529000 Rh5CG553500 Rh5DG540800 Rh7DG252000
rosa_wichuraiana	Rw1G000700 Rw3G021380 Rw5G046990 Rw7G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	542
AccII	CGCG	2 cut(s)	36, 38
AciI	CCGC	2 cut(s)	38, 544
AclWI	GGATC	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	14
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	3 cut(s)	404, 597, 640
AfeI	AGCGCT	1 cut(s)	524
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	3 cut(s)	172, 199, 565
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	5 cut(s)	141, 232, 274, 686, 694
AluI	AGCT	5 cut(s)	141, 232, 274, 686, 694
Alw21I	GWGCWC	1 cut(s)	143
Alw26I	GTCTC	2 cut(s)	67, 434
AlwI	GGATC	1 cut(s)	156
Ama87I	CYCGRG	1 cut(s)	142
Aor51HI	AGCGCT	1 cut(s)	524
AoxI	GGCC	3 cut(s)	114, 460, 514
ApaI	GGGCCC	2 cut(s)	118, 518
ApeKI	GCWGC	6 cut(s)	104, 232, 278, 318, 341, 525
ApoI	RAATTY	1 cut(s)	14
AspLEI	GCGC	2 cut(s)	38, 525
AspS9I	GGNCC	8 cut(s)	4, 114, 115, 207, 355, 461, 514, 515
AsuHPI	GGTGA	2 cut(s)	509, 590
AvaI	CYCGRG	1 cut(s)	142
AvaII	GGWCC	3 cut(s)	4, 207, 355
BaeGI	GKGCMC	2 cut(s)	118, 518
BanII	GRGCYC	3 cut(s)	118, 143, 518
BauI	CACGAG	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	143
BbvI	GCAGC	6 cut(s)	91, 219, 265, 328, 330, 512
BciT130I	CCWGG	1 cut(s)	459
BcoDI	GTCTC	2 cut(s)	67, 434
BfaI	CTAG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	526
BfuAI	ACCTGC	1 cut(s)	542
BisI	GCNGC	6 cut(s)	105, 233, 279, 319, 342, 526
BlpI	GCTNAGC	1 cut(s)	270
BlsI	GCNGC	6 cut(s)	106, 234, 280, 320, 343, 527
Bme1390I	CCNGG	1 cut(s)	459
Bme18I	GGWCC	3 cut(s)	4, 207, 355
BmeT110I	CYCGRG	1 cut(s)	142
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	8 cut(s)	4, 114, 115, 207, 355, 461, 514, 515
BmiI	GGNNCC	6 cut(s)	115, 116, 310, 333, 357, 516
BmrFI	CCNGG	1 cut(s)	459
BmsI	GCATC	3 cut(s)	118, 290, 643
BplI	GAGNNNNNCTC	2 cut(s)	392, 424
Bpu1102I	GCTNAGC	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	298
BsaJI	CCNNGG	1 cut(s)	322
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse1I	ACTGG	2 cut(s)	225, 350
Bse3DI	GCAATG	1 cut(s)	657
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	2 cut(s)	128, 678
BseNI	ACTGG	2 cut(s)	225, 350
BseRI	GAGGAG	3 cut(s)	41, 57, 69
BseSI	GKGCMC	2 cut(s)	118, 518
BseXI	GCAGC	6 cut(s)	91, 219, 265, 328, 330, 512
BsgI	GTGCAG	2 cut(s)	511, 612
Bsh1236I	CGCG	2 cut(s)	36, 38
BshFI	GGCC	3 cut(s)	116, 462, 516
BsiHKAI	GWGCWC	1 cut(s)	143
BsiHKCI	CYCGRG	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	2 cut(s)	67, 434
BsmBI	CGTCTC	1 cut(s)	67
BsnI	GGCC	3 cut(s)	116, 462, 516
BsoBI	CYCGRG	1 cut(s)	142
Bsp120I	GGGCCC	2 cut(s)	114, 514
Bsp1286I	GDGCHC	3 cut(s)	118, 143, 518
Bsp143I	GATC	2 cut(s)	88, 148
Bsp1720I	GCTNAGC	1 cut(s)	270
BspACI	CCGC	2 cut(s)	38, 544
BspANI	GGCC	3 cut(s)	116, 462, 516
BspCNI	CTCAG	2 cut(s)	129, 679
BspFNI	CGCG	2 cut(s)	36, 38
BspLI	GGNNCC	6 cut(s)	115, 116, 310, 333, 357, 516
BspMI	ACCTGC	1 cut(s)	542
BspPI	GGATC	1 cut(s)	156
BsrDI	GCAATG	1 cut(s)	657
BsrI	ACTGG	2 cut(s)	225, 350
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	2 cut(s)	88, 148
BssSI	CACGAG	1 cut(s)	211
Bst2BI	CACGAG	1 cut(s)	211
Bst2UI	CCWGG	1 cut(s)	459
Bst6I	CTCTTC	1 cut(s)	75
BstAPI	GCANNNNNTGC	1 cut(s)	534
BstC8I	GCNNGC	2 cut(s)	267, 276
BstDEI	CTNAG	3 cut(s)	137, 270, 687
BstDSI	CCRYGG	1 cut(s)	322
BstEII	GGTNACC	1 cut(s)	578
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	2 cut(s)	36, 38
BstH2I	RGCGCY	1 cut(s)	526
BstHHI	GCGC	2 cut(s)	38, 525
BstKTI	GATC	2 cut(s)	91, 151
BstMAI	GTCTC	2 cut(s)	67, 434
BstMBI	GATC	2 cut(s)	88, 148
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 271, 275, 522, 534
BstNI	CCWGG	1 cut(s)	459
BstPI	GGTNACC	1 cut(s)	578
BstSCI	CCNGG	1 cut(s)	457
BstSLI	GKGCMC	2 cut(s)	118, 518
BstUI	CGCG	2 cut(s)	36, 38
BstV1I	GCAGC	6 cut(s)	91, 219, 265, 328, 330, 512
BsuRI	GGCC	3 cut(s)	116, 462, 516
BtgI	CCRYGG	1 cut(s)	322
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	218, 357
BveI	ACCTGC	1 cut(s)	542
Cac8I	GCNNGC	2 cut(s)	267, 276
CfoI	GCGC	2 cut(s)	38, 525
Cfr13I	GGNCC	8 cut(s)	4, 114, 115, 207, 355, 461, 514, 515
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	3 cut(s)	403, 596, 639
CviAII	CATG	1 cut(s)	617
CviQI	GTAC	3 cut(s)	403, 596, 639
DdeI	CTNAG	3 cut(s)	137, 270, 687
DpnI	GATC	2 cut(s)	90, 150
DpnII	GATC	2 cut(s)	88, 148
Eam1104I	CTCTTC	1 cut(s)	75
EarI	CTCTTC	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	141
Eco24I	GRGCYC	3 cut(s)	118, 143, 518
Eco47I	GGWCC	3 cut(s)	4, 207, 355
Eco47III	AGCGCT	1 cut(s)	524
Eco53kI	GAGCTC	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	142
Eco91I	GGTNACC	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	141
EcoO109I	RGGNCCY	3 cut(s)	114, 115, 514
EcoO65I	GGTNACC	1 cut(s)	578
EcoRII	CCWGG	1 cut(s)	457
EcoT38I	GRGCYC	3 cut(s)	118, 143, 518
Esp3I	CGTCTC	1 cut(s)	67
FaeI	CATG	1 cut(s)	620
FaiI	YATR	4 cut(s)	374, 618, 630, 706
FatI	CATG	1 cut(s)	616
FauI	CCCGC	1 cut(s)	537
Fnu4HI	GCNGC	6 cut(s)	105, 233, 279, 319, 342, 526
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	3 cut(s)	118, 143, 518
Fsp4HI	GCNGC	6 cut(s)	105, 233, 279, 319, 342, 526
FspBI	CTAG	1 cut(s)	108
GlaI	GCGC	2 cut(s)	37, 524
GluI	GCNGC	6 cut(s)	105, 233, 279, 319, 342, 526
HaeII	RGCGCY	1 cut(s)	526
HaeIII	GGCC	3 cut(s)	116, 462, 516
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	2 cut(s)	38, 525
Hin1II	CATG	1 cut(s)	620
Hin6I	GCGC	2 cut(s)	36, 523
HinP1I	GCGC	2 cut(s)	36, 523
HindIII	AAGCTT	2 cut(s)	272, 692
HinfI	GANTC	5 cut(s)	133, 175, 407, 467, 561
HphI	GGTGA	2 cut(s)	509, 590
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	6 cut(s)	127, 138, 159, 400, 439, 610
Hpy188III	TCNNGA	4 cut(s)	83, 172, 179, 650
Hpy8I	GTNNAC	1 cut(s)	355
Hpy99I	CGWCG	2 cut(s)	36, 89
HpyAV	CCTTC	3 cut(s)	235, 322, 423
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	4 cut(s)	281, 528, 537, 593
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 271, 275, 522, 534
HpyF3I	CTNAG	3 cut(s)	137, 270, 687
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	1 cut(s)	620
HspAI	GCGC	2 cut(s)	36, 523
Kzo9I	GATC	2 cut(s)	88, 148
LmnI	GCTCC	2 cut(s)	28, 262
Lsp1109I	GCAGC	6 cut(s)	91, 219, 265, 328, 330, 512
LweI	GCATC	3 cut(s)	118, 290, 643
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	578
MalI	GATC	2 cut(s)	90, 150
MboI	GATC	2 cut(s)	88, 148
MboII	GAAGA	1 cut(s)	62
MfeI	CAATTG	2 cut(s)	288, 565
MhlI	GDGCHC	3 cut(s)	118, 143, 518
MluCI	AATT	3 cut(s)	14, 288, 565
MlyI	GAGTC	1 cut(s)	401
MnlI	CCTC	8 cut(s)	19, 78, 90, 128, 153, 207, 322, 505
MseI	TTAA	2 cut(s)	12, 554
MspR9I	CCNGG	1 cut(s)	459
MunI	CAATTG	2 cut(s)	288, 565
MvaI	CCWGG	1 cut(s)	459
MvnI	CGCG	2 cut(s)	36, 38
MwoI	GCNNNNNNNGC	5 cut(s)	113, 271, 275, 522, 534
NdeII	GATC	2 cut(s)	88, 148
NlaIII	CATG	1 cut(s)	620
NlaIV	GGNNCC	6 cut(s)	115, 116, 310, 333, 357, 516
NmuCI	GTSAC	1 cut(s)	578
PfeI	GAWTC	4 cut(s)	133, 175, 467, 561
PkrI	GCNGC	6 cut(s)	106, 234, 280, 320, 343, 527
PleI	GAGTC	1 cut(s)	401
PpsI	GAGTC	1 cut(s)	401
Psp124BI	GAGCTC	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	457
PspEI	GGTNACC	1 cut(s)	578
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	6 cut(s)	115, 116, 310, 333, 357, 516
PspOMI	GGGCCC	2 cut(s)	114, 514
PspPI	GGNCC	8 cut(s)	4, 114, 115, 207, 355, 461, 514, 515
RsaI	GTAC	3 cut(s)	404, 597, 640
RsaNI	GTAC	3 cut(s)	403, 596, 639
SacI	GAGCTC	1 cut(s)	143
SaqAI	TTAA	2 cut(s)	12, 554
SatI	GCNGC	6 cut(s)	105, 233, 279, 319, 342, 526
Sau3AI	GATC	2 cut(s)	88, 148
Sau96I	GGNCC	8 cut(s)	4, 114, 115, 207, 355, 461, 514, 515
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	1 cut(s)	459
SduI	GDGCHC	3 cut(s)	118, 143, 518
SfaNI	GCATC	3 cut(s)	118, 290, 643
SinI	GGWCC	3 cut(s)	4, 207, 355
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	3 cut(s)	14, 288, 565
SsiI	CCGC	2 cut(s)	38, 544
SspMI	CTAG	1 cut(s)	108
SstI	GAGCTC	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	457
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	2 cut(s)	84, 380
TasI	AATT	3 cut(s)	14, 288, 565
TatI	WGTACW	1 cut(s)	595
TfiI	GAWTC	4 cut(s)	133, 175, 467, 561
Tru1I	TTAA	2 cut(s)	12, 554
Tru9I	TTAA	2 cut(s)	12, 554
TscAI	CASTG	2 cut(s)	225, 357
TseFI	GTSAC	1 cut(s)	578
TseI	GCWGC	6 cut(s)	104, 232, 278, 318, 341, 525
Tsp45I	GTSAC	1 cut(s)	578
TspDTI	ATGAA	2 cut(s)	269, 389
TspRI	CASTG	2 cut(s)	225, 357
VpaK11BI	GGWCC	3 cut(s)	4, 207, 355
XapI	RAATTY	1 cut(s)	14
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.