Rh3AG238900

Zinc finger A20 and AN1 domain-containing stress-associated protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Reverse (-)
24893149 .. 24893664
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG238900.1

Sequence Viewer

Length: 516 bp
ATGGACTCTCACGATGAAACTGGATGCCAAGCTCCAGACCGCCCCATCCTTTGCATTAATAACTGTGGCTTCTTCGGAAGGGCAGCTACAATGAATATGTGTTCCAAATGTTACAAGGACATGCTTCTAAAGCAGGAGCAGGCCGATCTGGCAGCAACATCCATTGGTAGCCTTGTGAATGGCAAAAATAGTGGCATTGGCCCTGTTGTTGCTAATGCTGTTGATGTGCAAGCTGGACAAGTTGAGGCAGTGGTTATTTCAACTGAGCCATCTTGTGGCTCATCCTCAAGCAAAGTTACTGATGAGGTGAAAGAAATAGCGGGACCAAAGAGATGCACTACTTGCCGAAAGCGTGTTGGTCTAACTGGGTTCAATTGCAAATGTGGAAACACCTTCTGTTCAACTCATCGCTATTCTGACAAACATGACTGCCCTTTTGATTATAGGACTGCTGGTCGGGATGCTATTGCTAAAGCCAATCCTGTTGTCAAGGCAGAGAAACTTGATAAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

171

Amino Acids

18.26

Weight (kDa)

8.24

Isoelectric Point (pI)

26.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-A20 PF01754 16 - 39 6.6e-12 A20-like zinc finger
zf-AN1 PF01428 112 - 148 3.3e-10 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 275
AciI CCGC 2 cut(s) 40, 320
AfiI CCNNNNNNNGG 1 cut(s) 275
AgsI TTSAA 3 cut(s) 261, 373, 402
AhdI GACNNNNNGTC 1 cut(s) 453
AluBI AGCT 3 cut(s) 32, 86, 233
AluI AGCT 3 cut(s) 32, 86, 233
AoxI GGCC 2 cut(s) 141, 199
ApeKI GCWGC 2 cut(s) 83, 152
ArsI GACNNNNNNTTYG 2 cut(s) 419, 451
AseI ATTAAT 1 cut(s) 57
AspS9I GGNCC 2 cut(s) 200, 323
AsuHPI GGTGA 1 cut(s) 319
AvaII GGWCC 1 cut(s) 323
BarI GAAGNNNNNNTAC 2 cut(s) 70, 102
BbvI GCAGC 2 cut(s) 95, 164
BccI CCATC 2 cut(s) 53, 277
BfaI CTAG 1 cut(s) 514
BglI GCCNNNNNGGC 1 cut(s) 149
BglII AGATCT 1 cut(s) 510
BisI GCNGC 2 cut(s) 84, 153
BlsI GCNGC 2 cut(s) 85, 154
Bme18I GGWCC 1 cut(s) 323
BmeRI GACNNNNNGTC 1 cut(s) 453
BmgT120I GGNCC 2 cut(s) 200, 323
BmiI GGNNCC 1 cut(s) 324
BmrI ACTGGG 1 cut(s) 375
BmsI GCATC 3 cut(s) 14, 323, 451
BmuI ACTGGG 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 271
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse1I ACTGG 2 cut(s) 25, 370
BseGI GGATG 5 cut(s) 29, 45, 158, 281, 466
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 2 cut(s) 25, 370
BseXI GCAGC 2 cut(s) 95, 164
BshFI GGCC 2 cut(s) 143, 201
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 336
BsnI GGCC 2 cut(s) 143, 201
Bsp143I GATC 2 cut(s) 145, 510
BspACI CCGC 2 cut(s) 40, 320
BspANI GGCC 2 cut(s) 143, 201
BspCNI CTCAG 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 324
BsrI ACTGG 2 cut(s) 25, 370
BssMI GATC 2 cut(s) 145, 510
Bst4CI ACNGT 1 cut(s) 65
BstAPI GCANNNNNTGC 1 cut(s) 342
BstC8I GCNNGC 2 cut(s) 141, 231
BstDEI CTNAG 1 cut(s) 264
BstF5I GGATG 5 cut(s) 29, 45, 158, 281, 466
BstKTI GATC 2 cut(s) 148, 513
BstMBI GATC 2 cut(s) 145, 510
BstMWI GCNNNNNNNGC 3 cut(s) 130, 149, 342
BstNSI RCATGY 1 cut(s) 124
BstV1I GCAGC 2 cut(s) 95, 164
BstX2I RGATCY 1 cut(s) 510
BstYI RGATCY 1 cut(s) 510
BsuRI GGCC 2 cut(s) 143, 201
BtgZI GCGATG 1 cut(s) 392
BtsCI GGATG 5 cut(s) 29, 45, 158, 281, 466
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 2 cut(s) 141, 231
Cfr13I GGNCC 2 cut(s) 200, 323
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 2 cut(s) 121, 425
DdeI CTNAG 1 cut(s) 264
DpnI GATC 2 cut(s) 147, 512
DpnII GATC 2 cut(s) 145, 510
DriI GACNNNNNGTC 1 cut(s) 453
Eam1105I GACNNNNNGTC 1 cut(s) 453
Eco47I GGWCC 1 cut(s) 323
FaeI CATG 2 cut(s) 124, 428
FaiI YATR 4 cut(s) 98, 122, 426, 444
FaqI GGGAC 1 cut(s) 336
FatI CATG 2 cut(s) 120, 424
FauI CCCGC 1 cut(s) 313
Fnu4HI GCNGC 2 cut(s) 84, 153
FokI GGATG 5 cut(s) 32, 36, 145, 268, 473
Fsp4HI GCNGC 2 cut(s) 84, 153
FspBI CTAG 1 cut(s) 514
GluI GCNGC 2 cut(s) 84, 153
GsuI CTGGAG 1 cut(s) 18
HaeIII GGCC 2 cut(s) 143, 201
Hin1II CATG 2 cut(s) 124, 428
HinfI GANTC 1 cut(s) 5
HphI GGTGA 1 cut(s) 319
Hpy188I TCNGA 2 cut(s) 77, 418
Hpy188III TCNNGA 3 cut(s) 11, 35, 458
HpyAV CCTTC 2 cut(s) 72, 403
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4V TGCA 4 cut(s) 54, 229, 336, 378
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 149, 342
HpyF3I CTNAG 1 cut(s) 264
Hsp92II CATG 2 cut(s) 124, 428
Kzo9I GATC 2 cut(s) 145, 510
LmnI GCTCC 2 cut(s) 37, 136
Lsp1109I GCAGC 2 cut(s) 95, 164
LweI GCATC 3 cut(s) 14, 323, 451
MaeI CTAG 1 cut(s) 514
MaeIII GTNAC 2 cut(s) 110, 295
MalI GATC 2 cut(s) 147, 512
MboI GATC 2 cut(s) 145, 510
MboII GAAGA 1 cut(s) 64
MfeI CAATTG 1 cut(s) 373
MflI RGATCY 1 cut(s) 510
MluCI AATT 1 cut(s) 373
MnlI CCTC 3 cut(s) 238, 295, 298
MseI TTAA 1 cut(s) 57
MunI CAATTG 1 cut(s) 373
MwoI GCNNNNNNNGC 3 cut(s) 130, 149, 342
NdeII GATC 2 cut(s) 145, 510
NlaIII CATG 2 cut(s) 124, 428
NlaIV GGNNCC 1 cut(s) 324
NspI RCATGY 1 cut(s) 124
PflMI CCANNNNNTGG 1 cut(s) 275
PkrI GCNGC 2 cut(s) 85, 154
PshBI ATTAAT 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 324
PspPI GGNCC 2 cut(s) 200, 323
PsuI RGATCY 1 cut(s) 510
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 2 cut(s) 84, 153
Sau3AI GATC 2 cut(s) 145, 510
Sau96I GGNCC 2 cut(s) 200, 323
SetI ASST 5 cut(s) 34, 88, 235, 309, 395
SfaNI GCATC 3 cut(s) 14, 323, 451
SinI GGWCC 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 1 cut(s) 373
SsiI CCGC 2 cut(s) 40, 320
SspMI CTAG 1 cut(s) 514
TaaI ACNGT 1 cut(s) 65
TasI AATT 1 cut(s) 373
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 1 cut(s) 255
TseI GCWGC 2 cut(s) 83, 152
TspDTI ATGAA 2 cut(s) 30, 107
TspRI CASTG 1 cut(s) 255
Van91I CCANNNNNTGG 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 323
VspI ATTAAT 1 cut(s) 57
XceI RCATGY 1 cut(s) 124
XspI CTAG 1 cut(s) 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.